Carg24858 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24858
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RBBP6
Location	Cucurbita_argyrosperma_scaffold_245 : 98697 .. 101708 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAGTACTATGGCAGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTGCTATGGACGGTCCTTTCATCTCCGTTGGTACTTTGAAAGAAAATTTGTTTGAATCAAAGCAGTTGGGAAGGGGCACTGATTTTGACCTTGTTGTCTCCAACGCCCAGACTAATGAAGGTGGGTTTTGGCTCCCAATTGAATTTAGCTAATTTTAATAGATACATTTGAAACGATTCTGGGTTGCGTGGTTGTTAGAAGAGTGCTACTTGCGACCACCAATTGTCTCCTAAATTTTTGGAAGATCTATTTTATTTCTAGTCTAAAATTCCAGGTTTGAAGGCACTTAATTGCATAAACACTTAACTTGTGACTTTTCTGAAACTAAGAACTGTGGGAATTTCATTATGTTTTGGTTTTTAATTGAATGGTCAGTTTAACAATGTTGGATAGCTTACGAGATTATCCTTGTATTAATATCTGGAAGAATTACAATGGGGTTCTTCTGACCGTCTATGGAGATTCACATTTCTGAGTCTGGTTTTTGGATTGATATCGTTCTATTGTTTTATAGATTCTGTTATCTCCTTTGTAATTTTCAGAATATCTTGATGAAGCAATGTTGATCCCAAAGAATACTTCAGTTTTAATTCGTCGTGTTCCTGGAAGACCTCGTTTACCCATTGTTACAAAACAAGAGTACGATCTTTAACCTTTAATCAAATGGTTTTTGTATAAGTTGATGTTACATGTGTTTGATTTTTTTTATCTAATTTATATCATATCATCTTCCTTAAATGAACATCCTTTCTTCCTTGTAAAATGAAGAAAAGAATGTTCATTATGCCACATGTGTTAGCAGCACCGAGTTGGTGCCCCTAGGTCCCGTGAGCATAAGCCTATAAACAAAATAAACTGCTGTACATGTAAATGCAAATCTGAAGTCAGTTTCTTATGGAGATAACTTTTGATGATTTGACTTAGTGAAGGTGTTTGGTTTTGCAGGCCAAAAGTGGAAGGTGAAATTGAAGAGACCGAACAATACAATTCAACTGTTCTAGTTTCAGATTCATCAGCTGCCCTGAGATTTGTGAGCCTTAGTCTTCATATTATGAATTTGTATTTGATTCAGTTTGTATGATGTTATTGCTTCGACAATCTTTTAATTGACATATCTTTTGATCTGACAGACCGAAGATTCTGAGTGGGATGAGTTTGGTAACGATCTGTATGCAATTCCTGAAGTGCTTCCAGTTCAGCCAAGTAATCCTATTCCAGATGCACCTCCTACAAATAGAGCTGAAGAGGACAGCAAAATTAAGGCTTTAATTGATACCCCAGCCTTAGATTGGCAACAGTGAGTTACATTCTACTATTGTTGCAACTGTCAGTCGTGATGTGTTTATTTATAATTCTGATTATCAACATGCATTTATGGATTGCAGTCAAGGTTCTGATGGCTTTGGACCCGGTAGGGGTTTCGGAAGAGGCGCTGGTGGAAGGATGGGAGGGCGTGGTTTTGGTATGGACTTATCCTCACCAATTTATATTTTATTTAATGATTCATTTGATGAACATTGGCTATATTGCTGCCATCTGCTTAAACCCAAAATGTAATAAAATCATCACTCAACTCTAATCTCTGTATCATTTGGCGATATTATGCAGGATTTGAAAGGAAAACACCTCCACAGGGATACGTGTGTCACAGATGCAAAGTTCCTGGTGTGTTCATGTTTTTCTTAGTTAACGAATTGTTTGTCTTAGGTATTTTCTTTTTTCATTTTCCTTACCGTCTGCGGGGATCTGAATGTATTAATTTCTGTGTCCAGGACATTTTATTCAACATTGCCCCACAAATGGGGATCCGACTTATGACATAAAAAGAGTGAAGCCTCCCACTGGGATTCCGAAGTCTATGCTGATGGCTACTCCTGATGGCTCATATGCATTGCCAAGTGGTGCTGTAGCTGTCTTGAGGCCGAATGAGTAAGATATATTTTCAGTGTGTTTCAGTTTAATTGTGGATTTGGTCTACTCTAGTCATTCATTCATCATACCATTAACGAAACAGGGCTGCTTTTGAGAAGGAAATTGAAGGACTACCTTCGACACGTTCAGTTGGTGATTTTCCCCCTGAGCTTCACTGTCCTCTGTGCAAGGAGGTTATGAAAGATGCTGTCTTAACAAGCAAGTGTTGCTTTATGAGCTTTTGTGATAAATGTAAGTACAATTTTGTAACTATTACTACCACGTGGTTCTTTTTACTAAATAACATCTTCTGGAGTTAAGAACTCCAGTTATTTCAAGTGTTAGTTACCGTTCAGTTAGCTTGACCCTGTTAATTACTGTGAGTTCTTAAAACATTATGCATGCCTCTCCTGCGCATACTAAAAGTTAGCTTTTTGAATGTGTAAAACGTTTGTCACAGGTATTAGGGACCATATTATCTCTAAGTCAGCATGCGCTTGTGGAGCGACCAACATTCTTGCAGATGATCTCTTGCCAAATAAGACACTCAGGGATACAATCAATCGCATTCTGGAGTCTGGTAATAGTAGTGCTGATAATGCTGGTAGTACCTTTCAGGTGCAAGGTATGCGTTTTATAGTTTTGGTCTTTCACTTGGACTGAGATTTTTCTTTGCTATATTATGACTTATTCCGGTTGATAATTCATGTTTAGATATGGAATCTGCTCGCATTGCACAGCCAAAGGTTCCTTCCCCTACCGTATCTGCTGCTTCTAAGGGAGAAAGACATATACAGTCAGTCAACGAAGAGACTACAATGACCAAGCAGGTAAATGAGGAAAAGGCTATTACTTCTGGACCCCAGAGCTTAGAGAAGGTGAAGGCCACAAAAGCAGTTGACGAATCTGAAGCTACACATGAGTCAATGAGTGTGAAGGAACAAGCTTCACAAGGAAGCGCTTTAATAGTTGATGAAGAAGTACAGCAGAAGATGGCTGCTAGTGAGGCAGGTAATATTATGAGGAATAGTGCGCGTGTTTGA

mRNA sequence

AAAAGAAGTACTATGGCAGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTGCTATGGACGGTCCTTTCATCTCCGTTGGTACTTTGAAAGAAAATTTGTTTGAATCAAAGCAGTTGGGAAGGGGCACTGATTTTGACCTTGTTGTCTCCAACGCCCAGACTAATGAAGAATATCTTGATGAAGCAATGTTGATCCCAAAGAATACTTCAGTTTTAATTCGTCGTGTTCCTGGAAGACCTCGTTTACCCATTGTTACAAAACAAGAGCCAAAAGTGGAAGGTGAAATTGAAGAGACCGAACAATACAATTCAACTGTTCTAGTTTCAGATTCATCAGCTGCCCTGAGATTTACCGAAGATTCTGAGTGGGATGAGTTTGGTAACGATCTGTATGCAATTCCTGAAGTGCTTCCAGTTCAGCCAAGTAATCCTATTCCAGATGCACCTCCTACAAATAGAGCTGAAGAGGACAGCAAAATTAAGGCTTTAATTGATACCCCAGCCTTAGATTGGCAACATCAAGGTTCTGATGGCTTTGGACCCGGTAGGGGTTTCGGAAGAGGCGCTGGTGGAAGGATGGGAGGGCGTGGTTTTGGATTTGAAAGGAAAACACCTCCACAGGGATACGTGTGTCACAGATGCAAAGTTCCTGGACATTTTATTCAACATTGCCCCACAAATGGGGATCCGACTTATGACATAAAAAGAGTGAAGCCTCCCACTGGGATTCCGAAGTCTATGCTGATGGCTACTCCTGATGGCTCATATGCATTGCCAAGTGGTGCTGTAGCTGTCTTGAGGCCGAATGAGGCTGCTTTTGAGAAGGAAATTGAAGGACTACCTTCGACACGTTCAGTTGGTGATTTTCCCCCTGAGCTTCACTGTCCTCTGTGCAAGGAGGTTATGAAAGATGCTGTCTTAACAAGCAAGTGTTGCTTTATGAGCTTTTGTGATAAATGTATTAGGGACCATATTATCTCTAAGTCAGCATGCGCTTGTGGAGCGACCAACATTCTTGCAGATGATCTCTTGCCAAATAAGACACTCAGGGATACAATCAATCGCATTCTGGAGTCTGGTAATAGTAGTGCTGATAATGCTGGTAGTACCTTTCAGGTGCAAGATATGGAATCTGCTCGCATTGCACAGCCAAAGGTTCCTTCCCCTACCGTATCTGCTGCTTCTAAGGGAGAAAGACATATACAGTCAGTCAACGAAGAGACTACAATGACCAAGCAGGTAAATGAGGAAAAGGCTATTACTTCTGGACCCCAGAGCTTAGAGAAGGTGAAGGCCACAAAAGCAGTTGACGAATCTGAAGCTACACATGAGTCAATGAGTGTGAAGGAACAAGCTTCACAAGGAAGCGCTTTAATAGTTGATGAAGAAGTACAGCAGAAGATGGCTGCTAGTGAGGCAGGTAATATTATGAGGAATAGTGCGCGTGTTTGA

Coding sequence (CDS)

AAAAGAAGTACTATGGCAGTGTATTATAAATTTAAGAGTGCAAGAGATTATGATTCAATTGCTATGGACGGTCCTTTCATCTCCGTTGGTACTTTGAAAGAAAATTTGTTTGAATCAAAGCAGTTGGGAAGGGGCACTGATTTTGACCTTGTTGTCTCCAACGCCCAGACTAATGAAGAATATCTTGATGAAGCAATGTTGATCCCAAAGAATACTTCAGTTTTAATTCGTCGTGTTCCTGGAAGACCTCGTTTACCCATTGTTACAAAACAAGAGCCAAAAGTGGAAGGTGAAATTGAAGAGACCGAACAATACAATTCAACTGTTCTAGTTTCAGATTCATCAGCTGCCCTGAGATTTACCGAAGATTCTGAGTGGGATGAGTTTGGTAACGATCTGTATGCAATTCCTGAAGTGCTTCCAGTTCAGCCAAGTAATCCTATTCCAGATGCACCTCCTACAAATAGAGCTGAAGAGGACAGCAAAATTAAGGCTTTAATTGATACCCCAGCCTTAGATTGGCAACATCAAGGTTCTGATGGCTTTGGACCCGGTAGGGGTTTCGGAAGAGGCGCTGGTGGAAGGATGGGAGGGCGTGGTTTTGGATTTGAAAGGAAAACACCTCCACAGGGATACGTGTGTCACAGATGCAAAGTTCCTGGACATTTTATTCAACATTGCCCCACAAATGGGGATCCGACTTATGACATAAAAAGAGTGAAGCCTCCCACTGGGATTCCGAAGTCTATGCTGATGGCTACTCCTGATGGCTCATATGCATTGCCAAGTGGTGCTGTAGCTGTCTTGAGGCCGAATGAGGCTGCTTTTGAGAAGGAAATTGAAGGACTACCTTCGACACGTTCAGTTGGTGATTTTCCCCCTGAGCTTCACTGTCCTCTGTGCAAGGAGGTTATGAAAGATGCTGTCTTAACAAGCAAGTGTTGCTTTATGAGCTTTTGTGATAAATGTATTAGGGACCATATTATCTCTAAGTCAGCATGCGCTTGTGGAGCGACCAACATTCTTGCAGATGATCTCTTGCCAAATAAGACACTCAGGGATACAATCAATCGCATTCTGGAGTCTGGTAATAGTAGTGCTGATAATGCTGGTAGTACCTTTCAGGTGCAAGATATGGAATCTGCTCGCATTGCACAGCCAAAGGTTCCTTCCCCTACCGTATCTGCTGCTTCTAAGGGAGAAAGACATATACAGTCAGTCAACGAAGAGACTACAATGACCAAGCAGGTAAATGAGGAAAAGGCTATTACTTCTGGACCCCAGAGCTTAGAGAAGGTGAAGGCCACAAAAGCAGTTGACGAATCTGAAGCTACACATGAGTCAATGAGTGTGAAGGAACAAGCTTCACAAGGAAGCGCTTTAATAGTTGATGAAGAAGTACAGCAGAAGATGGCTGCTAGTGAGGCAGGTAATATTATGAGGAATAGTGCGCGTGTTTGA

Protein sequence

KRSTMAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDSEWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGPGRGFGRGAGGRMGGRGFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPTGIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEVMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGNSSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAITSGPQSLEKVKATKAVDESEATHESMSVKEQASQGSALIVDEEVQQKMAASEAGNIMRNSARV

Homology

[Close]

BLAST of Carg24858 vs. NCBI nr
Match: XP_023552395.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 861.3 bits (2224), Expect = 1.6e-246
Identity = 451/455 (99.12%), Postives = 453/455 (99.56%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTV VSDSSAALRFTEDS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVPVSDSSAALRFTEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGER+IQSVNEETTMTKQVNEEKAIT
Sbjct: 361 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERNIQSVNEETTMTKQVNEEKAIT 420

Query: 425 SGPQSLEKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQSLEK KATKAVDESEATHESMSV+EQASQGS
Sbjct: 421 SGPQSLEKAKATKAVDESEATHESMSVREQASQGS 455

[Close]

BLAST of Carg24858 vs. NCBI nr
Match: XP_023552396.1 (E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 861.3 bits (2224), Expect = 1.6e-246
Identity = 451/455 (99.12%), Postives = 453/455 (99.56%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTV VSDSSAALRFTEDS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVPVSDSSAALRFTEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGER+IQSVNEETTMTKQVNEEKAIT
Sbjct: 361 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERNIQSVNEETTMTKQVNEEKAIT 420

Query: 425 SGPQSLEKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQSLEK KATKAVDESEATHESMSV+EQASQGS
Sbjct: 421 SGPQSLEKAKATKAVDESEATHESMSVREQASQGS 455

[Close]

BLAST of Carg24858 vs. NCBI nr
Match: XP_022923325.1 (E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3 ubiquitin ligase PQT3-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 858.2 bits (2216), Expect = 1.3e-245
Identity = 433/455 (95.16%), Postives = 436/455 (95.82%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIE TEQYNSTV VSDSSAALRFTEDS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEGTEQYNSTVPVSDSSAALRFTEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
                           FGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT
Sbjct: 181 SRGFGRGAGGRMGGRGFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGER+IQSVNEETTMTKQVNEEKA+T
Sbjct: 361 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERNIQSVNEETTMTKQVNEEKAVT 420

Query: 425 SGPQSLEKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQSLEK KATKAVDESEATHESMSV+EQASQGS
Sbjct: 421 SGPQSLEKAKATKAVDESEATHESMSVREQASQGS 455

[Close]

BLAST of Carg24858 vs. NCBI nr
Match: XP_022923324.1 (E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 858.2 bits (2216), Expect = 1.3e-245
Identity = 433/455 (95.16%), Postives = 436/455 (95.82%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIE TEQYNSTV VSDSSAALRFTEDS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEGTEQYNSTVPVSDSSAALRFTEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
                           FGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT
Sbjct: 181 SRGFGRGAGGRMGGRGFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGER+IQSVNEETTMTKQVNEEKA+T
Sbjct: 361 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERNIQSVNEETTMTKQVNEEKAVT 420

Query: 425 SGPQSLEKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQSLEK KATKAVDESEATHESMSV+EQASQGS
Sbjct: 421 SGPQSLEKAKATKAVDESEATHESMSVREQASQGS 455

[Close]

BLAST of Carg24858 vs. NCBI nr
Match: XP_022923322.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 858.2 bits (2216), Expect = 1.3e-245
Identity = 433/455 (95.16%), Postives = 436/455 (95.82%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIE TEQYNSTV VSDSSAALRFTEDS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEGTEQYNSTVPVSDSSAALRFTEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
                           FGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT
Sbjct: 181 SRGFGRGAGGRMGGRGFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGER+IQSVNEETTMTKQVNEEKA+T
Sbjct: 361 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERNIQSVNEETTMTKQVNEEKAVT 420

Query: 425 SGPQSLEKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQSLEK KATKAVDESEATHESMSV+EQASQGS
Sbjct: 421 SGPQSLEKAKATKAVDESEATHESMSVREQASQGS 455

[Close]

BLAST of Carg24858 vs. TAIR10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 569.7 bits (1467), Expect = 1.7e-162
Identity = 294/453 (64.90%), Postives = 343/453 (75.72%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MA+YYKFKSARDYD+IAMDGPFISVG LK+ +FE+K LG G D D+VVSNAQTNEEYLDE
Sbjct: 1   MAIYYKFKSARDYDTIAMDGPFISVGILKDKIFETKHLGTGKDLDIVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPR+ ++T QEP+++ ++E+ +   +   V+D SAA  F ED 
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRITVITTQEPRIQNKVEDVQAETTNFPVADPSAA-EFPED- 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPD-APPTNRAEEDSKIKALIDTPALDW-QHQGSDGF 184
           E+DEFG DLY+IP+    Q   P P  A   ++ +E+SKI+ALIDTPALDW Q QG D F
Sbjct: 121 EYDEFGTDLYSIPDTQDAQHIIPRPHLATADDKVDEESKIQALIDTPALDWQQRQGQDTF 180

Query: 185 GPXXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKP 244
           G                 FG ERKTPP GYVCHRC +PGHFIQHCPTNGDP YD+KRVKP
Sbjct: 181 GAGRGYGRGMPGRMNGRGFGMERKTPPPGYVCHRCNIPGHFIQHCPTNGDPNYDVKRVKP 240

Query: 245 PTGIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPS-TRSVGDFPPELHCPLC 304
           PTGIPKSMLMATPDGSY+LPSGAVAVL+PNE AFEKE+EGLPS TRSVG+ PPEL CPLC
Sbjct: 241 PTGIPKSMLMATPDGSYSLPSGAVAVLKPNEDAFEKEMEGLPSTTRSVGELPPELKCPLC 300

Query: 305 KEVMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILE 364
           KEVMKDA LTSKCC+ SFCDKCIRDHIISKS C CG +++LADDLLPNKTLRDTINRILE
Sbjct: 301 KEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCVCGRSDVLADDLLPNKTLRDTINRILE 360

Query: 365 SGNSSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERH-IQSVNEETTMTKQVNEE 424
           +GN S +N GS   + D+ESAR   PK  SPT S ASKGE+  + S N + +  K   E 
Sbjct: 361 AGNDSTENVGSVGHIPDLESARCPPPKALSPTTSVASKGEKKPVLSNNNDASTLKAPMEV 420

Query: 425 KAITSGPQSLEKVKATKAVDESEATHESMSVKE 454
             ITS P++  +V   K VD  E+T  S+ VKE
Sbjct: 421 AEITSAPRASAEVNVEKPVDACESTQGSVIVKE 451

[Close]

BLAST of Carg24858 vs. TAIR10
Match: AT4G17410.3 (DWNN domain, a CCHC-type zinc finger)

HSP 1 Score: 528.9 bits (1361), Expect = 3.4e-150
Identity = 287/486 (59.05%), Postives = 344/486 (70.78%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MA+YYKFKSARDYD+I+MDGPFI+VG LKE ++E+K LG G D D+V+SNAQTNEEYLDE
Sbjct: 1   MAIYYKFKSARDYDTISMDGPFITVGLLKEKIYETKHLGSGKDLDIVISNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPR+ I+T++EP+VE ++E  +   + V+ +D+S       + 
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRIRIITREEPRVEDKVENVQADMNNVITADASPV-----ED 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           E+DEFGNDLY+IP+   V  +N   D+ P +  +E++K+KALIDTPALDW  QG+D FGP
Sbjct: 121 EFDEFGNDLYSIPDAPAVHSNNLCHDSAPAD--DEETKLKALIDTPALDWHQQGADSFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
                           FG ER TPP GYVCHRC V GHFIQHC TNG+P +D+KRVKPPT
Sbjct: 181 GRGYGRGMAGRMGGRGFGMERTTPPPGYVCHRCNVSGHFIQHCSTNGNPNFDVKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPS-TRSVGDFPPELHCPLCKE 304
           GIPKSMLMATP+GSY+LPSGAVAVL+PNE AFEKE+EGL S TRSVG+FPPEL CPLCKE
Sbjct: 241 GIPKSMLMATPNGSYSLPSGAVAVLKPNEDAFEKEMEGLTSTTRSVGEFPPELKCPLCKE 300

Query: 305 VMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESG 364
           VM+DA L SKCC  S+CDKCIRDHII+KS C CGAT++LADDLLPNKTLRDTINRILESG
Sbjct: 301 VMRDAALASKCCLKSYCDKCIRDHIIAKSMCVCGATHVLADDLLPNKTLRDTINRILESG 360

Query: 365 NSSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKA- 424
           NSSA+NAGS  QVQDMES R                              T + + E A 
Sbjct: 361 NSSAENAGSMCQVQDMESVRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLKPSIEIAE 420

Query: 425 ITSGPQSLEKVKATKAVDESEATHESMSVKEQA-SQGSALIVDEEVQQKMAASE-AGNIM 484
           ITS   S E VK  K VD S     S + KE A SQ +     EE+ Q++A+ E AG   
Sbjct: 421 ITSAWASAEIVKVEKPVDASANIQGSSNGKEAAVSQLNTQPPKEEMPQQVASGEQAGKRK 479

Query: 485 RNSARV 487
           +   R+
Sbjct: 481 KKKPRM 479

[Close]

BLAST of Carg24858 vs. TAIR10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 2.7e-06
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 291 DFPPELHCPLCKEVMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPN- 350
           D   +L CP+C +++KDA LT+  C  SFC  CI  H+ +KS C C + ++  + L PN 
Sbjct: 45  DLDKDLLCPICMQIIKDAFLTA--CGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNF 104

Query: 351 ---KTLRDTINRILESGNSSADNAGSTFQ 376
              K L+ T  R +    S  D      Q
Sbjct: 105 LLDKLLKKTSARHVSKTASPLDQFREALQ 131

[Close]

BLAST of Carg24858 vs. Swiss-Prot
Match: sp|B9DFV2|PQT3L_ARATH (E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 3.1e-161
Identity = 294/453 (64.90%), Postives = 343/453 (75.72%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MA+YYKFKSARDYD+IAMDGPFISVG LK+ +FE+K LG G D D+VVSNAQTNEEYLDE
Sbjct: 1   MAIYYKFKSARDYDTIAMDGPFISVGILKDKIFETKHLGTGKDLDIVVSNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPR+ ++T QEP+++ ++E+ +   +   V+D SAA  F ED 
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRITVITTQEPRIQNKVEDVQAETTNFPVADPSAA-EFPED- 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPD-APPTNRAEEDSKIKALIDTPALDW-QHQGSDGF 184
           E+DEFG DLY+IP+    Q   P P  A   ++ +E+SKI+ALIDTPALDW Q QG D F
Sbjct: 121 EYDEFGTDLYSIPDTQDAQHIIPRPHLATADDKVDEESKIQALIDTPALDWQQRQGQDTF 180

Query: 185 GPXXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKP 244
           G                 FG ERKTPP GYVCHRC +PGHFIQHCPTNGDP YD+KRVKP
Sbjct: 181 GAGRGYGRGMPGRMNGRGFGMERKTPPPGYVCHRCNIPGHFIQHCPTNGDPNYDVKRVKP 240

Query: 245 PTGIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPS-TRSVGDFPPELHCPLC 304
           PTGIPKSMLMATPDGSY+LPSGAVAVL+PNE AFEKE+EGLPS TRSVG+ PPEL CPLC
Sbjct: 241 PTGIPKSMLMATPDGSYSLPSGAVAVLKPNEDAFEKEMEGLPSTTRSVGELPPELKCPLC 300

Query: 305 KEVMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILE 364
           KEVMKDA LTSKCC+ SFCDKCIRDHIISKS C CG +++LADDLLPNKTLRDTINRILE
Sbjct: 301 KEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCVCGRSDVLADDLLPNKTLRDTINRILE 360

Query: 365 SGNSSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERH-IQSVNEETTMTKQVNEE 424
           +GN S +N GS   + D+ESAR   PK  SPT S ASKGE+  + S N + +  K   E 
Sbjct: 361 AGNDSTENVGSVGHIPDLESARCPPPKALSPTTSVASKGEKKPVLSNNNDASTLKAPMEV 420

Query: 425 KAITSGPQSLEKVKATKAVDESEATHESMSVKE 454
             ITS P++  +V   K VD  E+T  S+ VKE
Sbjct: 421 AEITSAPRASAEVNVEKPVDACESTQGSVIVKE 451

[Close]

BLAST of Carg24858 vs. Swiss-Prot
Match: sp|F4JP52|PQT3_ARATH (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 9.4e-150
Identity = 286/485 (58.97%), Postives = 343/485 (70.72%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MA+YYKFKSARDYD+I+MDGPFI+VG LKE ++E+K LG G D D+V+SNAQTNEEYLDE
Sbjct: 1   MAIYYKFKSARDYDTISMDGPFITVGLLKEKIYETKHLGSGKDLDIVISNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPR+ I+T++EP+VE ++E  +   + V+ +D+S       + 
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRIRIITREEPRVEDKVENVQADMNNVITADASPV-----ED 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           E+DEFGNDLY+IP+   V  +N   D+ P +  +E++K+KALIDTPALDW  QG+D FGP
Sbjct: 121 EFDEFGNDLYSIPDAPAVHSNNLCHDSAPAD--DEETKLKALIDTPALDWHQQGADSFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
                           FG ER TPP GYVCHRC V GHFIQHC TNG+P +D+KRVKPPT
Sbjct: 181 GRGYGRGMAGRMGGRGFGMERTTPPPGYVCHRCNVSGHFIQHCSTNGNPNFDVKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPS-TRSVGDFPPELHCPLCKE 304
           GIPKSMLMATP+GSY+LPSGAVAVL+PNE AFEKE+EGL S TRSVG+FPPEL CPLCKE
Sbjct: 241 GIPKSMLMATPNGSYSLPSGAVAVLKPNEDAFEKEMEGLTSTTRSVGEFPPELKCPLCKE 300

Query: 305 VMKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESG 364
           VM+DA L SKCC  S+CDKCIRDHII+KS C CGAT++LADDLLPNKTLRDTINRILESG
Sbjct: 301 VMRDAALASKCCLKSYCDKCIRDHIIAKSMCVCGATHVLADDLLPNKTLRDTINRILESG 360

Query: 365 NSSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKA- 424
           NSSA+NAGS  QVQDMES R                              T + + E A 
Sbjct: 361 NSSAENAGSMCQVQDMESVRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLKPSIEIAE 420

Query: 425 ITSGPQSLEKVKATKAVDESEATHESMSVKEQA-SQGSALIVDEEVQQKMAASEAGNIMR 484
           ITS   S E VK  K VD S     S + KE A SQ +     EE+ Q++A+ E G   +
Sbjct: 421 ITSAWASAEIVKVEKPVDASANIQGSSNGKEAAVSQLNTQPPKEEMPQQVASGEQGKRKK 478

Query: 485 NSARV 487
              R+
Sbjct: 481 KKPRM 478

[Close]

BLAST of Carg24858 vs. Swiss-Prot
Match: sp|P97868|RBBP6_MOUSE (E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5)

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-36
Identity = 113/378 (29.89%), Postives = 177/378 (46.83%), Query Frame = 0


Query: 7   VYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDEAM 66
           V+YKF S  +YD++  DG  IS+  LK+ +   ++L +  D DL ++NAQT EEY D+  
Sbjct: 4   VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADSDLQITNAQTKEEYTDDNA 63

Query: 67  LIPKNTSVLIRRVP-----GRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFT 126
           LIPKN+SV++RR+P        +  ++++ EP +           +T  + D+SA++   
Sbjct: 64  LIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPVM----------GTTKAIDDASASI--- 123

Query: 127 EDSEWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDG 186
                      L  + +   +  +N          A E+ KIKA++         Q    
Sbjct: 124 ----------SLAQLTKTANLAEAN----------ASEEDKIKAMMS--------QSGHE 183

Query: 187 FGPXXXXXXXXXXXXXXXXFGFERKT----PPQGYVCHRCKVPGHFIQHCPTNGDPTYDI 246
           + P                  + +KT    PP  Y C RC  PGH+I++CPTNGD  ++ 
Sbjct: 184 YDP----------------INYMKKTLVGPPPPSYTCFRCGKPGHYIKNCPTNGDKNFES 243

Query: 247 -KRVKPPTGIPKSMLMATPD-----------GSYALP---SGAVAVLRPNEAAFEKEIEG 306
             R+K  TGIP+S +M   D           G YA+P   + A A+ +  +  F  E E 
Sbjct: 244 GPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPE-EX 303

Query: 307 LPSTRSVGDFPPELHCPLCKEVMKDAVLTSKCCFMSFCDKCIRDHIISK---SACACGAT 358
                     P EL C +CK++M DAV+   CC  S+CD+CIR  ++     +   C   
Sbjct: 304 XXXXXXXXPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQN 321

[Close]

BLAST of Carg24858 vs. Swiss-Prot
Match: sp|Q7Z6E9|RBBP6_HUMAN (E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-36
Identity = 112/376 (29.79%), Postives = 175/376 (46.54%), Query Frame = 0


Query: 7   VYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDEAM 66
           V+YKF S  +YD++  DG  IS+  LK+ +   ++L +  D DL ++NAQT EEY D+  
Sbjct: 4   VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 63

Query: 67  LIPKNTSVLIRRVP-----GRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFT 126
           LIPKN+SV++RR+P        +  ++++ EP +           +T  + DSSA++   
Sbjct: 64  LIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMA----------TTKAIDDSSASI--- 123

Query: 127 EDSEWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQ--HQGS 186
                      L  + +   +  +N          A E+ KIKA++     ++   +   
Sbjct: 124 ----------SLAQLTKTANLAEAN----------ASEEDKIKAMMSQSGHEYDPINYMK 183

Query: 187 DGFGPXXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDI-K 246
              GP                       PP  Y C RC  PGH+I++CPTNGD  ++   
Sbjct: 184 KPLGP-----------------------PPPSYTCFRCGKPGHYIKNCPTNGDKNFESGP 243

Query: 247 RVKPPTGIPKSMLMATPD-----------GSYALP---SGAVAVLRPNEAAFEKEIEGLP 306
           R+K  TGIP+S +M   D           G YA+P   + A A+ +  +  F  E E   
Sbjct: 244 RIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPE-EXXX 303

Query: 307 STRSVGDFPPELHCPLCKEVMKDAVLTSKCCFMSFCDKCIRDHIISK---SACACGATNI 358
                   P EL C +CK++M DAV+   CC  S+CD+CIR  ++     +   C   ++
Sbjct: 304 XXXXXXPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 320

[Close]

BLAST of Carg24858 vs. Swiss-Prot
Match: sp|O94264|YORF_SCHPO (Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP8B7.15c PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.7e-32
Identity = 111/388 (28.61%), Postives = 180/388 (46.39%), Query Frame = 0


Query: 7   VYYKFKSARDYDSIAMDGPF-ISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDEA 66
           +YYKFKS +D   I  DG   +SV  +K  +   K+LG G DFDL++ NA +NEEY D+ 
Sbjct: 5   IYYKFKSQKDPSRITFDGTIGMSVFDVKREIIMQKKLGNGLDFDLLLYNANSNEEYDDDT 64

Query: 67  MLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDSE 126
            +IP++TSV++RRVP                   +++ +  +   VS +      T  + 
Sbjct: 65  FIIPRSTSVIVRRVPA------------------QKSGKGTAARYVSGAPK----TTGAR 124

Query: 127 WDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGPX 186
            D     +  + +  P+       +  P+  + ED+ I+ +    +  W+          
Sbjct: 125 SDSVKRPVPMLQKKAPITSGESNINKSPS--SSEDAAIQQMFQVSSDQWRETQD----KM 184

Query: 187 XXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIK-RVKPPT 246
                               K PP GY+C+RC   GH+IQ CPTN DP YD K RVK  T
Sbjct: 185 ASATPIYKPNQRRIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTT 244

Query: 247 GIPKSMLM-----ATPDGSYAL--PSGAVAVLRPNEAAFEKEIEGLPSTRSVGDF----P 306
           GIP+S L      A  D +  +    G   V++P+ A++E   +   +  +  D     P
Sbjct: 245 GIPRSFLKNVERPAEGDAANIMINAEGDYVVVQPDVASWE-TYQSRKAALTANDVYKMQP 304

Query: 307 P--ELHCPLCKEVMKDAVLTSKCCFMSFCDKCIRDHII-SKSACA-CGATNILADDLLPN 366
           P   L C LCK++ ++A  T  CC   FC++CI+  ++ S   C  C   ++L D L P+
Sbjct: 305 PNISLACTLCKKLARNACRT-PCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPD 362

Query: 367 ----KTLRDTINRILESGNSSADNAGST 374
               + +   +  +L S + ++D  G++
Sbjct: 365 YQKQREIEAVVKSVLGSNSKNSDKVGTS 362

[Close]

BLAST of Carg24858 vs. TrEMBL
Match: tr|A0A1S3BK09|A0A1S3BK09_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 9.2e-227
Identity = 414/456 (90.79%), Postives = 435/456 (95.39%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKE +FESK LGRGTDFDLVV+NAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVE E+E+ E   STV  +DSSAALRF +DS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVESEVEDMELDKSTVPAADSSAALRFPDDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIP+VLPVQPSNPI DAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPDVLPVQPSNPILDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCK+PGHFIQHCPTNGDP+YDI+RVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKIPGHFIQHCPTNGDPSYDIRRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVL+PNEAAFEKEIEGLPSTRSVGD PPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCF SFCDKCIRDHII+KSAC CGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFKSFCDKCIRDHIINKSACVCGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGS +QVQDMESAR+AQPKVPSPT+SAASKGER++QSV EETT TK+V EEK +T
Sbjct: 361 SSADNAGSAYQVQDMESARVAQPKVPSPTLSAASKGERNVQSVIEETTKTKEVEEEKVVT 420

Query: 425 SGPQSL-EKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQ+L EKVKATK VDESEATHES+SVKEQASQGS
Sbjct: 421 SGPQTLVEKVKATKVVDESEATHESISVKEQASQGS 456

[Close]

BLAST of Carg24858 vs. TrEMBL
Match: tr|A0A1S3BKM0|A0A1S3BKM0_CUCME (E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 9.2e-227
Identity = 414/456 (90.79%), Postives = 435/456 (95.39%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKE +FESK LGRGTDFDLVV+NAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVE E+E+ E   STV  +DSSAALRF +DS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVESEVEDMELDKSTVPAADSSAALRFPDDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIP+VLPVQPSNPI DAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP
Sbjct: 121 EWDEFGNDLYAIPDVLPVQPSNPILDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCK+PGHFIQHCPTNGDP+YDI+RVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKIPGHFIQHCPTNGDPSYDIRRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVL+PNEAAFEKEIEGLPSTRSVGD PPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCF SFCDKCIRDHII+KSAC CGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFKSFCDKCIRDHIINKSACVCGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGS +QVQDMESAR+AQPKVPSPT+SAASKGER++QSV EETT TK+V EEK +T
Sbjct: 361 SSADNAGSAYQVQDMESARVAQPKVPSPTLSAASKGERNVQSVIEETTKTKEVEEEKVVT 420

Query: 425 SGPQSL-EKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQ+L EKVKATK VDESEATHES+SVKEQASQGS
Sbjct: 421 SGPQTLVEKVKATKVVDESEATHESISVKEQASQGS 456

[Close]

BLAST of Carg24858 vs. TrEMBL
Match: tr|A0A0A0L6U2|A0A0A0L6U2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1)

HSP 1 Score: 790.4 bits (2040), Expect = 2.3e-225
Identity = 412/456 (90.35%), Postives = 434/456 (95.18%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVGTLKE +FESK LGRGTDFDLVV+NAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVE E+E+ EQ  ST   +DSSAALRF +DS
Sbjct: 61  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVESEVEDMEQDKSTFPAADSSAALRFPDDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIP+VLPVQPSNPI DAPPTN+AEEDSKIKALI+TPALDWQHQGSDGFG 
Sbjct: 121 EWDEFGNDLYAIPDVLPVQPSNPILDAPPTNKAEEDSKIKALIETPALDWQHQGSDGFGT 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCK+PGHFIQHCPTNGDP+YDI+RVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKIPGHFIQHCPTNGDPSYDIRRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVL+PNEAAFEKEIEGLPSTRSVGD PPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCF SFCDKCIRDHII+KSAC CGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFKSFCDKCIRDHIITKSACVCGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTKQVNEEKAIT 424
           SSADNAGS +QVQDMESAR+AQPKVPSPT+SAASKGER+IQSV EETT TK+V EEK +T
Sbjct: 361 SSADNAGSAYQVQDMESARVAQPKVPSPTLSAASKGERNIQSVIEETTKTKEVEEEKVVT 420

Query: 425 SGPQSL-EKVKATKAVDESEATHESMSVKEQASQGS 460
           SGPQ+L EKVKATK VDESEATHES+SVKEQASQGS
Sbjct: 421 SGPQTLVEKVKATKVVDESEATHESISVKEQASQGS 456

[Close]

BLAST of Carg24858 vs. TrEMBL
Match: tr|A0A1U8HH04|A0A1U8HH04_GOSHI (uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107886064 PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 3.1e-206
Identity = 389/474 (82.07%), Postives = 416/474 (87.76%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARD+DSI+MDGPFISVGTLKE +FESK LGRGTDFDLVV+NAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDFDSISMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
           AMLIPKNTSVLIRRVPG+PR+PIV  QEPKV  +IE  +   S +L +DSS   ++ EDS
Sbjct: 61  AMLIPKNTSVLIRRVPGKPRMPIVAAQEPKVGNQIENAQPEKSNLLDADSSVP-KYPEDS 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLY+IPE LPVQ SNP+ DAPPTN+A+EDSKIKALIDTPALDWQ QG+DGFGP
Sbjct: 121 EWDEFGNDLYSIPETLPVQSSNPLLDAPPTNKADEDSKIKALIDTPALDWQRQGADGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
           XXXXXXXXXXXXXXXXFG ERKTPPQGYVCHRCKVPGHFIQHCPTNGDP YDIKRVKPPT
Sbjct: 181 XXXXXXXXXXXXXXXXFGLERKTPPQGYVCHRCKVPGHFIQHCPTNGDPNYDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVL+PNEAAFEKEIEGLPSTRSVGD PPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MKDAVLTSKCCF SFCDKCIRDHIISKS C CGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKDAVLTSKCCFKSFCDKCIRDHIISKSMCVCGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEETTMTK-QVNEEKAI 424
           SSADNAGSTFQVQDMESAR  QPK+PSPT SAASK E+    V EE++  K + NE K  
Sbjct: 361 SSADNAGSTFQVQDMESARCPQPKIPSPTTSAASKEEQKPVYVKEESSDVKDKANEIKVD 420

Query: 425 TSGPQSLEKVKATKAVDESEATHESMSVKEQASQGSALIVDEEVQQKMAASEAG 478
               Q LEKVK  K  D S+AT ESMSVKE AS GSA +VDEEVQQK+A+ EAG
Sbjct: 421 ILPQQVLEKVKTAKLADASDATLESMSVKEPASHGSAPLVDEEVQQKLASGEAG 473

[Close]

BLAST of Carg24858 vs. TrEMBL
Match: tr|B9SXE4|B9SXE4_RICCO (Retinoblastoma-binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1389220 PE=4 SV=1)

HSP 1 Score: 725.3 bits (1871), Expect = 9.0e-206
Identity = 380/476 (79.83%), Postives = 416/476 (87.39%), Query Frame = 0


Query: 5   MAVYYKFKSARDYDSIAMDGPFISVGTLKENLFESKQLGRGTDFDLVVSNAQTNEEYLDE 64
           MAVYYKFKSARDYDSIAMDGPFISVG LKE +FESK LGRGTDFDLVV+NAQTNEEYLDE
Sbjct: 1   MAVYYKFKSARDYDSIAMDGPFISVGVLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDE 60

Query: 65  AMLIPKNTSVLIRRVPGRPRLPIVTKQEPKVEGEIEETEQYNSTVLVSDSSAALRFTEDS 124
            MLIPKNTSVLIRRVPGRPR+PIVT+QEPKVE ++EET    S+    DSS A+++TED+
Sbjct: 61  GMLIPKNTSVLIRRVPGRPRMPIVTEQEPKVENKVEETPLEKSSFSAPDSS-AMKYTEDN 120

Query: 125 EWDEFGNDLYAIPEVLPVQPSNPIPDAPPTNRAEEDSKIKALIDTPALDWQHQGSDGFGP 184
           EWDEFGNDLYAIPEV PVQPSN +PDAPPTN+A+EDSKIKALIDTPALDWQ QG+DGFGP
Sbjct: 121 EWDEFGNDLYAIPEVTPVQPSNVLPDAPPTNKADEDSKIKALIDTPALDWQRQGTDGFGP 180

Query: 185 XXXXXXXXXXXXXXXXFGFERKTPPQGYVCHRCKVPGHFIQHCPTNGDPTYDIKRVKPPT 244
               XXXXXXXXXXX FG ERKTPPQGYVCHRCKVPGHFIQHCPTNGDP +DIKRVKPPT
Sbjct: 181 GRGFXXXXXXXXXXXGFGLERKTPPQGYVCHRCKVPGHFIQHCPTNGDPNFDIKRVKPPT 240

Query: 245 GIPKSMLMATPDGSYALPSGAVAVLRPNEAAFEKEIEGLPSTRSVGDFPPELHCPLCKEV 304
           GIPKSMLMATPDGSYALPSGAVAVL+PNEAAFEKEIEGLPSTRSVGD PPELHCPLCKEV
Sbjct: 241 GIPKSMLMATPDGSYALPSGAVAVLKPNEAAFEKEIEGLPSTRSVGDLPPELHCPLCKEV 300

Query: 305 MKDAVLTSKCCFMSFCDKCIRDHIISKSACACGATNILADDLLPNKTLRDTINRILESGN 364
           MK+AVLTSKCCF SFCDKCIRD+IISK+ C CGATNILADDLLPNKTLRDTINRILESGN
Sbjct: 301 MKNAVLTSKCCFTSFCDKCIRDYIISKAKCVCGATNILADDLLPNKTLRDTINRILESGN 360

Query: 365 SSADNAGSTFQVQDMESARIAQPKVPSPTVSAASKGERHIQSVNEET---TMTKQVNEEK 424
           SSA+NAGSTFQVQDMESAR  QPK+PSPT SAASK E+      EET    + ++V+EEK
Sbjct: 361 SSAENAGSTFQVQDMESARNPQPKIPSPTQSAASKEEQKPSPAIEETPNPNLKEKVDEEK 420

Query: 425 AITSGPQSLEKVKATKAVDESEATHESMSVKEQASQGSALIVDEEVQQKMAASEAG 478
            +    Q  +K +  KA D SEATHESMS++E ASQGSA + +EEVQQ++A  EAG
Sbjct: 421 PVILLQQVPDKPRTYKAPDVSEATHESMSMREPASQGSAPLAEEEVQQRLAPGEAG 475

The following BLAST results are available for this feature:

BLAST of Carg24858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552395.1	1.6e-246	99.12	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023552396.1	1.6e-246	99.12	E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022923325.1	1.3e-245	95.16	E3 ubiquitin ligase PQT3-like isoform X3 [Cucurbita moschata] >XP_022923326.1 E3...	[more]
XP_022923324.1	1.3e-245	95.16	E3 ubiquitin ligase PQT3-like isoform X2 [Cucurbita moschata]	[more]
XP_022923322.1	1.3e-245	95.16	E3 ubiquitin ligase PQT3-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg24858 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47430.1	1.7e-162	64.90	DWNN domain, a CCHC-type zinc finger	[more]
AT4G17410.3	3.4e-150	59.05	DWNN domain, a CCHC-type zinc finger	[more]
AT2G32950.1	2.7e-06	34.83	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg24858 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9DFV2\|PQT3L_ARATH	3.1e-161	64.90	E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 ...	[more]
sp\|F4JP52\|PQT3_ARATH	9.4e-150	58.97	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3...	[more]
sp\|P97868\|RBBP6_MOUSE	1.1e-36	29.89	E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5	[more]
sp\|Q7Z6E9\|RBBP6_HUMAN	2.4e-36	29.79	E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1	[more]
sp\|O94264\|YORF_SCHPO	4.7e-32	28.61	Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of Carg24858 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK09\|A0A1S3BK09_CUCME	9.2e-227	90.79	E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BKM0\|A0A1S3BKM0_CUCME	9.2e-227	90.79	E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0L6U2\|A0A0A0L6U2_CUCSA	2.3e-225	90.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1	[more]
tr\|A0A1U8HH04\|A0A1U8HH04_GOSHI	3.1e-206	82.07	uncharacterized protein LOC107886064 isoform X2 OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|B9SXE4\|B9SXE4_RICCO	9.0e-206	79.83	Retinoblastoma-binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_138...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR025829	Zn_knuckle_CX2CX3GHX4C
IPR013083	Znf_RING/FYVE/PHD
IPR014891	DWNN_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24858-RA	Carg24858-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014891	DWNN domain	SMART	SM01180	DWNN_2	coord: 7..80 e-value: 6.7E-39 score: 145.2
IPR014891	DWNN domain	PFAM	PF08783	DWNN	coord: 7..80 e-value: 2.7E-30 score: 104.4
IPR014891	DWNN domain	PROSITE	PS51282	DWNN	coord: 7..80 score: 31.535
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 277..375 e-value: 2.4E-13 score: 51.8
IPR025829	Zinc knuckle CX2CX3GHX4C	PFAM	PF13696	zf-CCHC_2	coord: 209..229 e-value: 5.7E-10 score: 38.7
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..83 e-value: 1.3E-31 score: 110.2
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 206..257 e-value: 1.8E-17 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 434..448
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..457
None	No IPR available	PANTHER	PTHR15439:SF0	SOMETHING THAT STICKS LIKE GLUE, ISOFORM A	coord: 5..472
None	No IPR available	PANTHER	PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	coord: 5..472
None	No IPR available	CDD	cd16620	vRING-HC-C4C4_RBBP6	coord: 293..331 e-value: 1.60658E-14 score: 67.2689
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 287..361
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 198..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24858	Cla005625	Watermelon (97103) v1	carwmB0414
Carg24858	Csa3G019910	Cucumber (Chinese Long) v2	carcuB0448
Carg24858	MELO3C013928	Melon (DHL92) v3.5.1	carmeB0424
Carg24858	ClCG10G002560	Watermelon (Charleston Gray)	carwcgB0410
Carg24858	CSPI03G02560	Wild cucumber (PI 183967)	carcpiB0453
Carg24858	Cucsa.321030	Cucumber (Gy14) v1	carcgyB0483
Carg24858	CmaCh06G007940	Cucurbita maxima (Rimu)	carcmaB0580
Carg24858	CmaCh16G011270	Cucurbita maxima (Rimu)	carcmaB0579
Carg24858	CmoCh06G008140	Cucurbita moschata (Rifu)	carcmoB0564
Carg24858	CmoCh16G011790	Cucurbita moschata (Rifu)	carcmoB0563
Carg24858	Lsi07G012840	Bottle gourd (USVL1VR-Ls)	carlsiB379
Carg24858	Cp4.1LG14g09390	Cucurbita pepo (Zucchini)	carcpeB0585
Carg24858	Cp4.1LG08g07320	Cucurbita pepo (Zucchini)	carcpeB0586
Carg24858	CsGy3G002490	Cucumber (Gy14) v2	carcgybB0424
Carg24858	MELO3C013928.2	Melon (DHL92) v3.6.1	carmedB0427
Carg24858	CsaV3_3G002590	Cucumber (Chinese Long) v3	carcucB0449
Carg24858	Bhi11G000027	Wax gourd	carwgoB0502

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24858	Carg25182	Silver-seed gourd	carcarB434

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24858	Watermelon (97103) v2	carwmbB0440