Carg24833 (gene) Silver-seed gourd

NameCarg24833
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProhibitin-3, mitochondrial
LocationCucurbita_argyrosperma_scaffold_157 : 382759 .. 385767 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGATCGAGCTGAGGAGAATTGAAGCATCAAGGGAGATTGCATCCACCCTCGCCAAGTCGCCGAATGTGGCCTACTTGCCCGGTGGTCAGAACATGCTTTTGGCTCTCAATTCGAATCGTTGAATGAATTGGTAAGCTAATAAACTCGTATCACGTTATTGATATATGTTTCTTGCTTTAGTCTGGTATGTGTTTGATTCATTAAAACTATGGGTGAACATGTCATTTCTAATCTTTTTAGTGTTACAATCCAATGTGATATCATTATCAACGAGTCTGATCTAATTGAGAAGTCATGTATGGAATGAGACGTTAAAAGTTTTTCCAAGAAAAATAATGCAGTATTAGCTGTTCAATTCGTCCACGAGATGACATTTTAGTTTTTTGTACGTTGAATCAGTGAAAGCCAAGCCCCTTGTGTTATCTCTAAGACTATTTTTTTATTGTTCTTATGTTTTTTTTTATTAAGCAACAGATTGCCATGTTCATCAACTAGCGATATCAGTTGAAGAGTCTAGAAAAGAACTACAGTATATTATATTTATATTGTAAATAAGTAAAATGGCAAACATCATAAGATATGAACCCCAGGCACAAGGTACACAATCTATACTTCAGATTCTTGTTTCTAAATACCAAGTGTAGGGGAACTGAAAAGAAATCATGGCTTAAGATTCTCCTTGATAGAGTTAGTATGGAGGGCTTGTGAAAAGTAATCATGGCTGAAGATTGTTTTGAATCATGTTGTTTTTAGTAGACGATGAAAGTCAGAATCAACTAATCTTGGGATGTGAATTCAGTCCCTTAAGGGTAGCAGGCTTTGGCTTGCTTATCTTTGTGCTATTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGATGAAAAATATGTAGGGGAGCTTTGGTTCCTGATTGGACTTCATTTTTCTCTTTGCGTTTCCGCATGTTAAGACTTTTGTAATTTTCTTTAAGGCCTTGTTTTGCATGATTGTGCCCCTCTCCTTTGGGTGTTCCTTTTGTATTCCCCCTGTATTCTTTGAATGGATAGGAATACTAAGAAATATGGTTTGGATATGAGAGAGAGATTATAGAAAAGATAAGAAATGAATGGGAAGAGTTAACAACCTGACGCAGTAGTAGAGGTAAGAAAGAGACTTGGGTGCGATTGGATTATTGTGCCTCCAGTTTGAGTCGGGAGGGAGATAGGACTTAGATGTATAAGTAAGAGATCTGAAGTGAGAACAAGGTTAGAGGGGATATGTGAAGAAGTGAGAAGGATCTCATCTTGCTTGTCACTTGTGCCTCATTTAGCATGCTCTAAAGGTGTGTGCCTTTGCGTAGTTGCTTGCCAGAGAGCTTTTGCCCATAGAATGCTTTTGCAATTTGGAATGACTTAGTAATCTTTGTCTTAGATATTAACATCATGCAAATTTACCAATTCCTGGAGTTGCACTTTCAGGTAGGAAGTCTTGTGAAATTAGTGCAAATGCTCAATTGGTCGATGTATACACATTTCTTTAAGAAATAATAATCAGTGATGGTTATGGTCAAAGTTTTCAGCTTGGGCATGTTGTGGGGCTTATCTGTGCATGTACAAAATCACTGGATGGAACAAGTAGAAAGAGGGCATACTGACTTTTGGTATGGTTGCTTCATTGTGATTGGAACTTTAGGATATATGAATTTATATGTTCTGTTCAGCTTTGGTCCGATAGTTAAGGCTTATTGCAAATAATTCTTCATAACTGCAAGGCAAACACCAGATACTTTAGGTGTTGATTCATTCATTTAGTTTTTCTTATAGCCTTATTGTGATGTCCCACGTCAGTTGGGGAGGAGAACAAAACACCCTTTATAAGGGGGTGGAAACCTTTCCTTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAGAGGACAACATTTGCTAGCGGTGGATCTGGGCCATTACACTTATTTATTTATTTATTTATTCTCCCAGGACCTCAACAGGAAAAATTTGGTGGAAAAACAAGGTTTCTGTACTGGCATGAATGGGGGTTGTGGGGGGATGAAATGTATGGTGGGCGTAATCCTCTAAATCATTAAGCTTTCAATCATCTGATCATTTTCAATCTTTGGCTACAGACTCTTGGTTTATATTTCCAATTGGTCGGGTTGAAATTATTTTCCTCTAACACTATCTCAAGACTTCTATGATAGAGTTAATCTAACGAGTAATTGTCCCCGTTAAACTCTAGGTTTACAGAAAACTCGTATTTACTTGCAGGGTATCTTTGTAGGTGTGCACAGAACGGAAGGATGATCTGCTGATTGACTCGTCTCAAACTTAGAGCTCTACCCCACGGTATGCGTAATGGTAAATGAACATCATAGAATAAGAGTTTTTAGACATTTTCTGTCTCATAAAAATTAGTCCGATGATCGAACATATTCTTGATTCAGCAATTGTTTTCATTTAAGTTTTTGCCTTTTTGAGGGACTCCCTCTTCTCTTGTGAGCACGTCTTATTTGAACATAAGGCCCGTTTCTTTCAGTATAAAGAATGGAGTTTGGTGGTCTTTGTAATTTTGTTTTATTCCTTATTGCATCATAATATAAAGTAAAAATAACGTTAGATATGTTAAAAAAAAAAGTTTATAGATAATGGTTAAGATTTAAATCTAGAATCATATTCTTTGAATTGTGCTTCATCAATCATCAGTCAATTTAGAATTGTGTTTGGGCTGTTGAACCTTCTGTTTTACTCAATGTTTCTATACATCAAATATGCAAATTAATAAAAGATCGTCTAAAGAATAAGTTTGACCGAGAGTTTCATTAAGTAAAAGGAAATAAAAGATCATCCCCCAAGGAAACTCGATATTAAAAAGAACTAGAAAGTAATTAAGTTCTTAATTTGGGCTTAAAACAAAAATCGATGCAAGTTGGAACTGGAACTTGAGGCACAATGGAGTAGCACAGGAGGGCAGACACAGATAGATA

mRNA sequence

ATGGGTTTGATCGAGCTGAGGAGAATTGAAGCATCAAGGGAGATTGCATCCACCCTCGCCAAGTCGCCGAATGTGGCCTACTTGCCCGGTGATTGCCATGTTCATCAACTAGCGATATCAGTTGAAGAGTCTAGAAAAGAACTACAGGGAACTGAAAAGAAATCATGGCTTAAGATTCTCCTTGATAGAGTGTGCACAGAACGGAAGGATGATCTGCTGATTGACTCGTCTCAAACTTAGAGCTCTACCCCACGGTATGCGTAATGGTAAATGAACATCATAGAATAAGAGTTTTTAGACATTTTCTGTCTCATAAAAATTAGTCCGATGATCGAACATATTCTTGATTCAGCAATTGTTTTCATTTAAGTTTTTGCCTTTTTGAGGGACTCCCTCTTCTCTTGTGAGCACGTCTTATTTGAACATAAGGCCCGTTTCTTTCAGTATAAAGAATGGAGTTTGGTGGTCTTTGTAATTTTGTTTTATTCCTTATTGCATCATAATATAAAGTAAAAATAACGTTAGATATGTTAAAAAAAAAAGTTTATAGATAATGGTTAAGATTTAAATCTAGAATCATATTCTTTGAATTGTGCTTCATCAATCATCAGTCAATTTAGAATTGTGTTTGGGCTGTTGAACCTTCTGTTTTACTCAATGTTTCTATACATCAAATATGCAAATTAATAAAAGATCGTCTAAAGAATAAGTTTGACCGAGAGTTTCATTAAGTAAAAGGAAATAAAAGATCATCCCCCAAGGAAACTCGATATTAAAAAGAACTAGAAAGTAATTAAGTTCTTAATTTGGGCTTAAAACAAAAATCGATGCAAGTTGGAACTGGAACTTGAGGCACAATGGAGTAGCACAGGAGGGCAGACACAGATAGATA

Coding sequence (CDS)

ATGGGTTTGATCGAGCTGAGGAGAATTGAAGCATCAAGGGAGATTGCATCCACCCTCGCCAAGTCGCCGAATGTGGCCTACTTGCCCGGTGATTGCCATGTTCATCAACTAGCGATATCAGTTGAAGAGTCTAGAAAAGAACTACAGGGAACTGAAAAGAAATCATGGCTTAAGATTCTCCTTGATAGAGTGTGCACAGAACGGAAGGATGATCTGCTGATTGACTCGTCTCAAACTTAG

Protein sequence

MGLIELRRIEASREIASTLAKSPNVAYLPGDCHVHQLAISVEESRKELQGTEKKSWLKILLDRVCTERKDDLLIDSSQT
BLAST of Carg24833 vs. NCBI nr
Match: XP_002300084.2 (prohibitin-3, mitochondrial [Populus trichocarpa] >XP_024449423.1 prohibitin-3, mitochondrial [Populus trichocarpa] >PNT58048.1 hypothetical protein POPTR_001G335700v3 [Populus trichocarpa] >PNT58049.1 hypothetical protein POPTR_001G335700v3 [Populus trichocarpa] >PNT58050.1 hypothetical protein POPTR_001G335700v3 [Populus trichocarpa] >PNT58051.1 hypothetical protein POPTR_001G335700v3 [Populus trichocarpa])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. NCBI nr
Match: XP_010265468.1 (PREDICTED: prohibitin-3, mitochondrial-like [Nelumbo nucifera])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. NCBI nr
Match: XP_011045196.1 (PREDICTED: prohibitin-3, mitochondrial [Populus euphratica] >XP_011045197.1 PREDICTED: prohibitin-3, mitochondrial [Populus euphratica])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. NCBI nr
Match: XP_014499851.1 (prohibitin-3, mitochondrial [Vigna radiata var. radiata])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. NCBI nr
Match: XP_022955467.1 (prohibitin-3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. TAIR10
Match: AT5G40770.1 (prohibitin 3)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLA+SPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLARSPNVAYLPG 267

BLAST of Carg24833 vs. TAIR10
Match: AT3G27280.2 (prohibitin 4)

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-09
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASRE+A+TLA+SPNVAYLPG
Sbjct: 238 MGLIELRRIEASREVAATLARSPNVAYLPG 267

BLAST of Carg24833 vs. TAIR10
Match: AT5G14300.1 (prohibitin 5)

HSP 1 Score: 47.4 bits (111), Expect = 4.8e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLP 30
           MGLI+LRR+EA+RE+A TL+ SPNV YLP
Sbjct: 204 MGLIKLRRVEAAREVAITLSNSPNVVYLP 232

BLAST of Carg24833 vs. Swiss-Prot
Match: sp|O04331|PHB3_ARATH (Prohibitin-3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLA+SPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLARSPNVAYLPG 267

BLAST of Carg24833 vs. Swiss-Prot
Match: sp|Q9LK25|PHB4_ARATH (Prohibitin-4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB4 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-08
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASRE+A+TLA+SPNVAYLPG
Sbjct: 238 MGLIELRRIEASREVAATLARSPNVAYLPG 267

BLAST of Carg24833 vs. Swiss-Prot
Match: sp|Q9LY99|PHB5_ARATH (Prohibitin-5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB5 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.7e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLP 30
           MGLI+LRR+EA+RE+A TL+ SPNV YLP
Sbjct: 204 MGLIKLRRVEAAREVAITLSNSPNVVYLP 232

BLAST of Carg24833 vs. Swiss-Prot
Match: sp|Q9BKU4|PHB1_CAEEL (Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans OX=6239 GN=phb-1 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.6e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 2   GLIELRRIEASREIASTLAKSPNVAYLPGD 32
           GL+ELR+IEA+ EIA  +AK+ NV YLPG+
Sbjct: 237 GLVELRKIEAAEEIAERMAKNKNVTYLPGN 266

BLAST of Carg24833 vs. TrEMBL
Match: tr|B9GJB2|B9GJB2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G335700v3 PE=4 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. TrEMBL
Match: tr|A0A2P2K8E3|A0A2P2K8E3_RHIMU (Uncharacterized protein MANES_17G107000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 237 MGLIELRRIEASREIASTLAKSPNVAYLPG 266

BLAST of Carg24833 vs. TrEMBL
Match: tr|A0A1S3U1G2|A0A1S3U1G2_VIGRR (prohibitin-3, mitochondrial OS=Vigna radiata var. radiata OX=3916 GN=LOC106760920 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. TrEMBL
Match: tr|A0A1U8AEQ1|A0A1U8AEQ1_NELNU (prohibitin-3, mitochondrial-like OS=Nelumbo nucifera OX=4432 GN=LOC104603193 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASREIASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREIASTLAKSPNVAYLPG 267

BLAST of Carg24833 vs. TrEMBL
Match: tr|B9RBN7|B9RBN7_RICCO (Prohibitin, putative OS=Ricinus communis OX=3988 GN=RCOM_1679310 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 1   MGLIELRRIEASREIASTLAKSPNVAYLPG 31
           MGLIELRRIEASRE+ASTLAKSPNVAYLPG
Sbjct: 238 MGLIELRRIEASREVASTLAKSPNVAYLPG 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_002300084.23.0e-06100.00prohibitin-3, mitochondrial [Populus trichocarpa] >XP_024449423.1 prohibitin-3, ... [more]
XP_010265468.13.0e-06100.00PREDICTED: prohibitin-3, mitochondrial-like [Nelumbo nucifera][more]
XP_011045196.13.0e-06100.00PREDICTED: prohibitin-3, mitochondrial [Populus euphratica] >XP_011045197.1 PRED... [more]
XP_014499851.13.0e-06100.00prohibitin-3, mitochondrial [Vigna radiata var. radiata][more]
XP_022955467.13.0e-06100.00prohibitin-3, mitochondrial-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G40770.11.2e-0996.67prohibitin 3[more]
AT3G27280.23.6e-0990.00prohibitin 4[more]
AT5G14300.14.8e-0672.41prohibitin 5[more]
Match NameE-valueIdentityDescription
sp|O04331|PHB3_ARATH2.2e-0896.67Prohibitin-3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB3 PE=1 SV=1[more]
sp|Q9LK25|PHB4_ARATH6.5e-0890.00Prohibitin-4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB4 PE=1 SV=1[more]
sp|Q9LY99|PHB5_ARATH8.7e-0572.41Prohibitin-5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB5 PE=1 SV=1[more]
sp|Q9BKU4|PHB1_CAEEL9.6e-0463.33Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans OX=6239 GN=... [more]
Match NameE-valueIdentityDescription
tr|B9GJB2|B9GJB2_POPTR2.0e-06100.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G335700v3 PE=... [more]
tr|A0A2P2K8E3|A0A2P2K8E3_RHIMU2.0e-06100.00Uncharacterized protein MANES_17G107000 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
tr|A0A1S3U1G2|A0A1S3U1G2_VIGRR2.0e-06100.00prohibitin-3, mitochondrial OS=Vigna radiata var. radiata OX=3916 GN=LOC10676092... [more]
tr|A0A1U8AEQ1|A0A1U8AEQ1_NELNU2.0e-06100.00prohibitin-3, mitochondrial-like OS=Nelumbo nucifera OX=4432 GN=LOC104603193 PE=... [more]
tr|B9RBN7|B9RBN7_RICCO2.6e-0696.67Prohibitin, putative OS=Ricinus communis OX=3988 GN=RCOM_1679310 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000163Prohibitin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24833-RACarg24833-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000163ProhibitinPANTHERPTHR23222PROHIBITINcoord: 1..32
NoneNo IPR availablePANTHERPTHR23222:SF9PROHIBITIN-5, MITOCHONDRIALcoord: 1..32