Carg24814 (gene) Silver-seed gourd

Overview
NameCarg24814
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
LocationCucurbita_argyrosperma_scaffold_157 : 118671 .. 119507 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAGAACCCCCCAAGTGAAGAATTTGGAAGTAGAAGATTCGATGGAATTAGCTATGCTCCGTCATGCTGTTCGTCACCAAGAAAAATGAAGGTGAAAGGATAAGTGAATCAAAGAAGTGTAGTGGTTCTTATAGATTGCAAAGCTACGCATAATATCATCTTTCAGTTGCTAGTGGAAGAGCTTAAGTTACTCCTCACTGAGACAGCGAACTATGGTGTAGTGATATGGGAAACAGAGTTTCCCTTCGTGGTAGAGGAGTCTGTAACTCAGTTGTGGTTTGCCTACCTGAGATCACTGTAAGGGAAGATTTCTTACCCCTAGACCTAGGAGGGGTAGATGTAATTTTGGAAATGCAATGATCATGGAAGATGGGGTTTGTGGGTGTGGATTGGATGTCGCTAACCAAGACCTTCTACCTCGGTAGAACAAGGTGACATGTCAGGGGATCTTTCCCTCACTAAGGCCAAGGTCTAGTAAAAATGCTTGCCCGAACTGGACAGACTAGAACATGGGCTTCTTAGTTGAATTAGATCTTGAACACCAATGGGGAAGAGGCTAGCAAAGACGATGCCAACTTGGATGTTCACAGAGAAATGCATTTGCCTTGGTGGAATACAACCGTATCTTTGAGTTACCAAAAGGCATTCCACCAGAGCGGCCAGCTGATTATGCTGTTGGCCAGATCAACGTCAAATTTTATAAGTATGATAAAAATTTTATTTTGAAAGGCTGATCAGTGAGATGCTCGCTTCTATGGTCATTCGACCTCGCACCAATCTATTCTCTAGCCCCGTGCTTCTAGTGAAAGTGGTGTTGCGAGATTTTGTGTAG

mRNA sequence

ATGAAAGAGAACCCCCCAAGTGAAGAATTTGGAAGTAGAAGATTCGATGGAATTAGCTATGCTCCGTCATGCTGTTCGTCACCAAGAAAAATGAAGTTGCTAGTGGAAGAGCTTAAGTTACTCCTCACTGAGACAGCGAACTATGGTGTAGTGATATGGGAAACAGAGTTTCCCTTCGTGGTAGAGGAGTCTAGAAATGCATTTGCCTTGGTGGAATACAACCGTATCTTTGAGTTACCAAAAGGCATTCCACCAGAGCGGCCAGCTGATTATGCTGTTGGCCAGATCAACGTCAAATTTTATAAGCTGATCAGTGAGATGCTCGCTTCTATGGTCATTCGACCTCGCACCAATCTATTCTCTAGCCCCGTGCTTCTAGTGAAAGTGGTGTTGCGAGATTTTGTGTAG

Coding sequence (CDS)

ATGAAAGAGAACCCCCCAAGTGAAGAATTTGGAAGTAGAAGATTCGATGGAATTAGCTATGCTCCGTCATGCTGTTCGTCACCAAGAAAAATGAAGTTGCTAGTGGAAGAGCTTAAGTTACTCCTCACTGAGACAGCGAACTATGGTGTAGTGATATGGGAAACAGAGTTTCCCTTCGTGGTAGAGGAGTCTAGAAATGCATTTGCCTTGGTGGAATACAACCGTATCTTTGAGTTACCAAAAGGCATTCCACCAGAGCGGCCAGCTGATTATGCTGTTGGCCAGATCAACGTCAAATTTTATAAGCTGATCAGTGAGATGCTCGCTTCTATGGTCATTCGACCTCGCACCAATCTATTCTCTAGCCCCGTGCTTCTAGTGAAAGTGGTGTTGCGAGATTTTGTGTAG

Protein sequence

MKENPPSEEFGSRRFDGISYAPSCCSSPRKMKLLVEELKLLLTETANYGVVIWETEFPFVVEESRNAFALVEYNRIFELPKGIPPERPADYAVGQINVKFYKLISEMLASMVIRPRTNLFSSPVLLVKVVLRDFV
Homology
[Close]
BLAST of Carg24814 vs. NCBI nr
Match: KYP33709.1 (Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan])

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 171 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYLHHQKEAMTQMIKEMLTEGI 230

[Close]
BLAST of Carg24814 vs. NCBI nr
Match: KYP79090.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 170 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYLHHQKEAMTQMIKEMLTEGI 229

[Close]
BLAST of Carg24814 vs. NCBI nr
Match: KYP76627.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 524 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYPHHQKEAMTQMIKEMLTEGI 583

[Close]
BLAST of Carg24814 vs. NCBI nr
Match: OMO96556.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L ++  +F+ PKG+PP+R  D+ +      G INV+ Y+           +ISEML   +
Sbjct: 52  LCKFQTVFDTPKGLPPQRFHDHHIHLQPGTGPINVRPYRYPHSQKSDMATIISEMLHEGI 111

[Close]
BLAST of Carg24814 vs. NCBI nr
Match: KYP64598.1 (Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFY-----------KLISEMLASMV 129
           L +Y  IF+ PKG+PP RP D+ +        INVK Y           K+I+EML   +
Sbjct: 447 LHQYEPIFQKPKGLPPHRPHDHHIPLLPNTTPINVKPYRYPHSQKTIMTKMIAEMLLDGI 506

[Close]
BLAST of Carg24814 vs. TrEMBL
Match: tr|A0A151UIJ3|A0A151UIJ3_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_047361 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 170 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYLHHQKEAMTQMIKEMLTEGI 229

[Close]
BLAST of Carg24814 vs. TrEMBL
Match: tr|A0A151QTW0|A0A151QTW0_CAJCA (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_045424 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 171 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYLHHQKEAMTQMIKEMLTEGI 230

[Close]
BLAST of Carg24814 vs. TrEMBL
Match: tr|A0A151UBC5|A0A151UBC5_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_020878 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L EY R+F+ P G+PP RP D+ +        INVK Y+           +I EML   +
Sbjct: 524 LHEYARVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYRYPHHQKEAMTQMIKEMLTEGI 583

[Close]
BLAST of Carg24814 vs. TrEMBL
Match: tr|A0A1R3JNU7|A0A1R3JNU7_COCAP (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_04895 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFYK-----------LISEMLASMV 129
           L ++  +F+ PKG+PP+R  D+ +      G INV+ Y+           +ISEML   +
Sbjct: 52  LCKFQTVFDTPKGLPPQRFHDHHIHLQPGTGPINVRPYRYPHSQKSDMATIISEMLHEGI 111

[Close]
BLAST of Carg24814 vs. TrEMBL
Match: tr|A0A2K3JSJ5|A0A2K3JSJ5_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g050182 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-05
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0 

Query: 70  LVEYNRIFELPKGIPPERPADYAV------GQINVKFY-----------KLISEMLASMV 129
           L++Y+ +F+ P G+PP+R  D+A+      G +NV+ Y           K I EMLA+ V
Sbjct: 231 LLKYDSVFQTPSGLPPKRSKDHAINLIEGQGAVNVRPYRYPHHHKNEIEKQIKEMLATGV 290

The following BLAST results are available for this feature:
BLAST of Carg24814 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP33709.13.4e-0544.74Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan][more]
KYP79090.13.4e-0544.74Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan][more]
KYP76627.14.4e-0544.74Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan][more]
OMO96556.15.8e-0543.42reverse transcriptase [Corchorus capsularis][more]
KYP64598.11.3e-0444.74Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan][more]
BLAST of Carg24814 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg24814 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg24814 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A151UIJ3|A0A151UIJ3_CAJCA2.2e-0544.74Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821... [more]
tr|A0A151QTW0|A0A151QTW0_CAJCA2.2e-0544.74Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_... [more]
tr|A0A151UBC5|A0A151UBC5_CAJCA2.9e-0544.74Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821... [more]
tr|A0A1R3JNU7|A0A1R3JNU7_COCAP3.8e-0543.42Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_04895 PE=4 SV... [more]
tr|A0A2K3JSJ5|A0A2K3JSJ5_TRIPR8.5e-0542.11Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g05018... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24814-RACarg24814-RAmRNA