Carg24780 (gene) Silver-seed gourd

NameCarg24780
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionhistidine protein methyltransferase 1 homolog
LocationCucurbita_argyrosperma_scaffold_212 : 11750 .. 13965 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGACCGTTTATTCTCTTTCTACACTTAAAAAACTCTCTATAAACTTATCACACAGGTAGAAACTTATACAGATATCCATCTACTTTTGTGTCTTTATAACTTAAACGCAATTTTTTTTTTGTGTATTATAATTTTTTATGTAATGTTTTTATTTCTATATTACCTTGCATCATTATCTAATGTAGTTTTCAATGCTTTAATAGTGTTTGAGCCGTCCTCATGGAGTTGTATACATGGCTGGAAAGAAACATTACTTTGGAGTAGGAGGAGGAACCCGACGCTTTCTCTCTGTGTTAGAAAAAGAAGGTAAGCTGGTCGTACACAATTTCGATAAAATTATGCTTAAACATTATACTTCTTCCTGATTGGACAAATGAGAACTAATTTAAAATGAATTTGATATTCTTGTGGGGTCTTCCATTGGAGACTCTTCTATGAATTCGTTATACACATTGCTAGCCTAAAATATCATGAGTGATGAATTTCTTCTGGGTCATTGGCTGATTTAAGACGAATGATTCCTTTTTTTTAATTCTTTTTTCTTTCTAATTTTAACTTTTTTATGAAGCAGTGAATCATTTCATTGATATGATAAAATTTACAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAAAAAGGAAACTTGTGAGACCCAACATAGGTTGGAGTCTTTATAAGGGTGTGGAAACCTCTCTCTAATAGACGCGTTTTAAAATCCGTGAGGTTGACGGTGATACGTAATGTGCCAAAGCAGGCAATATTGGCTAGCGGTGGGTTTTAACTGTTACAAGATCGTACCCAATGAATTACAAGAAGAGGATTTGAATCGCACCCAATTAGAGTTAAGAAAGGTTTGAATGTGTTTCCACGTTTGTGAAGATAAGAGGAATCACTATCTGACTTATTCTGTGATTATATGGTTTGAGAACTAAAATTATATGTTTGTTTCCCTACAAAGTTTCCATTAATTTCAGATGGGTTTATGATTCAATCACTTTTTGAAGGGAATTATTTGTTTAATTGACTGTTTATCTTATGTGCCCTTACAGGTGAAATGGTTTCCAAACTGATTGCAGAAGTTGCTGATGGTTCGTCTAACGTTAGAGAAGTGTGGAAGATCTCATTGAAATAGGTTATAAATCCTAATCTTTCACTGAAAAGTTTTCTTTCGTTACTGGTACATGCCTGCATCAAAGTAATTCTTGTTCATGTTTTGGGATTTTTTATCTGGCACCTTTCTTCTACAAAACTTCTCAAATGATCAAAATATCTTCAATTTTGTTTTCTCTCTTTTTTAGGCAAAGATAAATTAAATTAATATAACCCAATTATAATCCTTGCACAAGGAAGCATTAGGGATGGTTTATGCAAATGATCACTGGAACGATAGCGTTCTGTATTTCTCTCCTTTGTCGAGTTCGTATCTGAAAATTATGGATCAAATCTTTTTTGTGAAGTTGAACACTGTGTTGTGTGCTCCCTTTGTTGGAAAGTATGTCATAGTTTCTTCAAGAATATTACATGCTCTAACTGTGATGAGTGGATGGATATGTCTTAGCAAAATCCTGGAAAAGAACTAAATGGATCCTTAGGTACTTACAATACTTCATGAGCATTCCTTGTATCTGATGAAAATATTTATGTATGAATTTTGCAGTTGACATGGTCAAAGAAGATCATCAATAGGTATGCGTTGAAGCTATGAACTATTATTGGCGCCCCAAATTCAGCTTATTATAGCCCATCAACACGAAAAGCAGCTGAGCACATAGAATTGGAACCTAGGGACTGCCTACTTAAGCTATGCTCAATTGGTATTTAAGGGATCATCCATGATTCGAGTTTGATTCGACGTTTTGTTAGAACATGATTAGAGGTTTGAATTTCTATCCCTGCACGTTTGAACTTGAAAAGAAAAAAAAAAAAGTTGAAGAGAGTAAAATGACACAAACTCGTGAGATCGGACATTGAACGGACTTTGAACTTCTAACTTTTGATTGATGATACAATATATTTTGAGTTGGTGATAGCCATATTAATTATGGGATGAAAAGTTCCAGAGAATCAATAGAGATCGAAGGACACTATATCGAAAAGTTTTTAGCGTAGTGTGGATGTAAGTTGAAAATATCGAACTATATAACAGGCGTTCTTTCATATCTTTTCTCATTTTCAGTAGGGGTGTGCATTCAACCCGACAACTC

mRNA sequence

ATGGCGGAGACCGTTTATTCTCTTTCTACACTTAAAAAACTCTCTATAAACTTATCACACAGCCGTCCTCATGGAGTTGTATACATGGCTGGAAAGAAACATTACTTTGGAGTAGGAGGAGGAACCCGACGCTTTCTCTCTGTGTTAGAAAAAGAAGGTGAAATGGTTTCCAAACTGATTGCAGAAGTTGCTGATGGTTCGTCTAACTTGACATGGTCAAAGAAGATCATCAATAGGTATGCGTTGAAGCTATGAACTATTATTGGCGCCCCAAATTCAGCTTATTATAGCCCATCAACACGAAAAGCAGCTGAGCACATAGAATTGGAACCTAGGGACTGCCTACTTAAGCTATGCTCAATTGGTATTTAAGGGATCATCCATGATTCGAGTTTGATTCGACGTTTTGTTAGAACATGATTAGAGGTTTGAATTTCTATCCCTGCACGTTTGAACTTGAAAAGAAAAAAAAAAAAGTTGAAGAGAGTAAAATGACACAAACTCGTGAGATCGGACATTGAACGGACTTTGAACTTCTAACTTTTGATTGATGATACAATATATTTTGAGTTGGTGATAGCCATATTAATTATGGGATGAAAAGTTCCAGAGAATCAATAGAGATCGAAGGACACTATATCGAAAAGTTTTTAGCGTAGTGTGGATGTAAGTTGAAAATATCGAACTATATAACAGGCGTTCTTTCATATCTTTTCTCATTTTCAGTAGGGGTGTGCATTCAACCCGACAACTC

Coding sequence (CDS)

ATGGCGGAGACCGTTTATTCTCTTTCTACACTTAAAAAACTCTCTATAAACTTATCACACAGCCGTCCTCATGGAGTTGTATACATGGCTGGAAAGAAACATTACTTTGGAGTAGGAGGAGGAACCCGACGCTTTCTCTCTGTGTTAGAAAAAGAAGGTGAAATGGTTTCCAAACTGATTGCAGAAGTTGCTGATGGTTCGTCTAACTTGACATGGTCAAAGAAGATCATCAATAGGTATGCGTTGAAGCTATGA

Protein sequence

MAETVYSLSTLKKLSINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSKLIAEVADGSSNLTWSKKIINRYALKL
BLAST of Carg24780 vs. NCBI nr
Match: XP_022956194.1 (histidine protein methyltransferase 1 homolog [Cucurbita moschata] >XP_022956195.1 histidine protein methyltransferase 1 homolog [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 228 MAETVYSLSTLKTLYRLITQCLSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 287

Query: 61  LIAEVADGSSNL 71
           LIAEVADGSSN+
Sbjct: 288 LIAEVADGSSNV 299

BLAST of Carg24780 vs. NCBI nr
Match: XP_022979862.1 (histidine protein methyltransferase 1 homolog [Cucurbita maxima] >XP_022979863.1 histidine protein methyltransferase 1 homolog [Cucurbita maxima] >XP_022979864.1 histidine protein methyltransferase 1 homolog [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 227 MAETVYSLSTLKTLYKLITQCLSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 286

Query: 61  LIAEVADGSSNL 71
           LIAEVADGSSN+
Sbjct: 287 LIAEVADGSSNV 298

BLAST of Carg24780 vs. NCBI nr
Match: XP_023528866.1 (histidine protein methyltransferase 1 homolog [Cucurbita pepo subsp. pepo] >XP_023528867.1 histidine protein methyltransferase 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 228 MAETVYSLSTLKTLYKLITQCLSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 287

Query: 61  LIAEVADGSSNL 71
           LIAEVADGSSN+
Sbjct: 288 LIAEVADGSSNV 299

BLAST of Carg24780 vs. NCBI nr
Match: XP_022138235.1 (histidine protein methyltransferase 1 homolog [Momordica charantia] >XP_022138236.1 histidine protein methyltransferase 1 homolog [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-23
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVY+AGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 274 MAETVYSLSTLKTLYKLITQCLSRPHGVVYLAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 333

Query: 61  LIAEVADGSSNL 71
           LIAEVADGSSN+
Sbjct: 334 LIAEVADGSSNV 345

BLAST of Carg24780 vs. NCBI nr
Match: XP_008439038.1 (PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVY+AGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 228 MAETVYSLSTLKTLYKLITQCLSRPHGVVYLAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 287

Query: 61  LIAEVADGSSNL 71
           LI EVADGSSN+
Sbjct: 288 LIVEVADGSSNV 299

BLAST of Carg24780 vs. TAIR10
Match: AT4G14000.1 (Putative methyltransferase family protein)

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-16
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAET+YS+S  K     I    + P G VYMA KK+YFGVGGGTR+FLS++EK+G + S 
Sbjct: 210 MAETIYSISAQKSQYELIKRCLAYPDGAVYMAAKKYYFGVGGGTRQFLSMIEKDGALAST 269

Query: 61  LIAEVADGSSNL 71
           L+++V DGSSN+
Sbjct: 270 LVSQVTDGSSNV 281

BLAST of Carg24780 vs. TAIR10
Match: AT2G43320.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 5.7e-05
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           M E  YS+++LKKL   I      P+GV+Y+A KK Y G   G +   +++++E  + + 
Sbjct: 276 MTEIPYSITSLKKLYSLIKKCLRPPYGVMYLAAKKQYVGFNSGAKHLRNLVDEETILGAH 335

Query: 61  LIAEVAD 66
           L+ E  D
Sbjct: 336 LVKETTD 342

BLAST of Carg24780 vs. Swiss-Prot
Match: sp|Q55DL2|MET18_DICDI (Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0270580 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-07
Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 2   AETVYSLSTLKKL-SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSKLI 61
           ++T+Y++ + KKL ++  +H   +G  Y+A K +YFGVGGG R+F  +L+    +  K +
Sbjct: 229 SDTLYNVGSFKKLYNLISNHLESNGKCYLASKTYYFGVGGGIRKFEELLKILNRLSIKTV 288

Query: 62  AEVADGSSNLTWSKKIINR 80
            ++ DG SN+    +I N+
Sbjct: 289 RDIKDGLSNVREVVEITNK 307

BLAST of Carg24780 vs. TrEMBL
Match: tr|A0A1S3AYF7|A0A1S3AYF7_CUCME (histidine protein methyltransferase 1 homolog OS=Cucumis melo OX=3656 GN=LOC103483944 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-23
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYSLSTLK L   I    SRPHGVVY+AGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 228 MAETVYSLSTLKTLYKLITQCLSRPHGVVYLAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 287

Query: 61  LIAEVADGSSNL 71
           LI EVADGSSN+
Sbjct: 288 LIVEVADGSSNV 299

BLAST of Carg24780 vs. TrEMBL
Match: tr|A0A0A0LAX3|A0A0A0LAX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171830 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVY+LSTLK L   I    SRPHGVVY+AGKKHYFGVGGGTRRFLSVLEKEGEMVSK
Sbjct: 228 MAETVYALSTLKTLYKLITQCLSRPHGVVYLAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 287

Query: 61  LIAEVADGSSNL 71
           LI EVADGSSN+
Sbjct: 288 LIVEVADGSSNV 299

BLAST of Carg24780 vs. TrEMBL
Match: tr|A0A2P4N285|A0A2P4N285_QUESU (Histidine protein methyltransferase 1 like OS=Quercus suber OX=58331 GN=CFP56_23707 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYS+STL+ L   I +  S PHGVVYMA KKHYFGVGGGTRRFLS++EK+G M S 
Sbjct: 226 MAETVYSISTLQSLYELIKMCTSSPHGVVYMAAKKHYFGVGGGTRRFLSLVEKDGVMASN 285

Query: 61  LIAEVADGSSNL 71
           L+AEVADGSSN+
Sbjct: 286 LVAEVADGSSNV 297

BLAST of Carg24780 vs. TrEMBL
Match: tr|A0A2P6SBI1|A0A2P6SBI1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0331221 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.4e-19
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYS+STL+ L   I    +RPHGVVY+A KKHYFGVGGGTRRFLSV+EK+G +VS 
Sbjct: 114 MAETVYSISTLQHLYELIKKCITRPHGVVYLAAKKHYFGVGGGTRRFLSVVEKDGVLVSS 173

Query: 61  LIAEVADGSSNL 71
           ++AEVADGSSN+
Sbjct: 174 MVAEVADGSSNV 185

BLAST of Carg24780 vs. TrEMBL
Match: tr|A0A2P6QW11|A0A2P6QW11_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413351 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.4e-19
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1   MAETVYSLSTLKKL--SINLSHSRPHGVVYMAGKKHYFGVGGGTRRFLSVLEKEGEMVSK 60
           MAETVYS+STL+ L   I    +RPHGVVY+A KKHYFGVGGGTRRFLSV+EK+G +VS 
Sbjct: 221 MAETVYSISTLQHLYELIKKCITRPHGVVYLAAKKHYFGVGGGTRRFLSVVEKDGVLVSS 280

Query: 61  LIAEVADGSSNL 71
           ++AEVADGSSN+
Sbjct: 281 MVAEVADGSSNV 292

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022956194.11.7e-2387.50histidine protein methyltransferase 1 homolog [Cucurbita moschata] >XP_022956195... [more]
XP_022979862.11.7e-2387.50histidine protein methyltransferase 1 homolog [Cucurbita maxima] >XP_022979863.1... [more]
XP_023528866.11.7e-2387.50histidine protein methyltransferase 1 homolog [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022138235.13.8e-2386.11histidine protein methyltransferase 1 homolog [Momordica charantia] >XP_02213823... [more]
XP_008439038.11.1e-2284.72PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT4G14000.14.2e-1655.56Putative methyltransferase family protein[more]
AT2G43320.15.7e-0534.33S-adenosyl-L-methionine-dependent methyltransferases superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q55DL2|MET18_DICDI4.5e-0734.18Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum OX=446... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3AYF7|A0A1S3AYF7_CUCME7.3e-2384.72histidine protein methyltransferase 1 homolog OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A0A0LAX3|A0A0A0LAX3_CUCSA1.6e-2283.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171830 PE=4 SV=1[more]
tr|A0A2P4N285|A0A2P4N285_QUESU2.9e-1972.22Histidine protein methyltransferase 1 like OS=Quercus suber OX=58331 GN=CFP56_23... [more]
tr|A0A2P6SBI1|A0A2P6SBI1_ROSCH8.4e-1970.83Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0331221 PE=4... [more]
tr|A0A2P6QW11|A0A2P6QW11_ROSCH8.4e-1970.83Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413351 PE=4... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24780-RACarg24780-RAmRNA