Carg24733 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24733
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial
Location	Cucurbita_argyrosperma_scaffold_259 : 83576 .. 84692 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCGTGACGGTTTTGAGAAGTTTGAGTTTGATTAAAATATGAGCACAAATAGGAAAAATACGTGGATGAACAACAAAATGCATAGAATACAATGAACTAGTCGTAACTGACCATGTTAACTCTATCCATGATCTTACAAAGGAGGAAGATAACAGTGATGTTGGAGAGGAAGAGGACAGTGATTCGGAGTGATTCTAAAATCTTTGCACTTGTTGCAATGTACTGAGGACAGGAGAAATCGAACTTGAAATGTAAATTCGTTTTGTCTCTACCAAAAAATTGATGGACCAAGTAGAATCCACTGTAGTCCGACATTGAAACCTCTCCCTCTTTTAAAACATGGAAGGGAAGCTAGGTGGGGTCGGTGGATTGTGAGATCACATCTTGGTTGGAGAGGGGAACAAAACATTCTTTAAAGAGTGTAGAAACTTCTCCCTATATTAAAACGCGGAAGGGATCACACTTTGGTTGGAAAGGGGAAAACGCGGAAGGGATCACACTTTGGTTGGAAAGGGGAACGGAAGGGAAAGCTCAAAAGAGTATAATATCTGAGGTTTTAGATAATTTTTTTTCACCAAAATTCTACGTTTCAAATTTTCATCTCAAATTATCTTCGCCCATAATTCTGGACTTTCTGCTCTGCTCAACCTTCAACGCCTTTCAAATCGATCTGTCGAGGAGGTTCTTAGGGTTTCTCCTGATTTTGTTGTTGTTCTTGGCCTTCAGCAGAGCTTAACGCCTTCTAGAAATAATGGTTCTTTGAATCTGTTGAAGTTGATGTAGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGTTCTGATGTACGAGGAAGTAGAGGGAAGAGAATTAAGGAGAAACTCACTTTAATTTGAAGGCTGTGTCGAAGGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

mRNA sequence

ATGACGACCGTGACGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

Coding sequence (CDS)

ATGACGACCGTGACGAAGAAGGCGCTTGGGTTGCTTGTGGAATCCGAAAAAGGCAATGGCAGTGCGGTTTCATCGTCACAAACAGTTGATTCTGTCGAGAAAGTAAAATCAGAATCTAATACTGAGAAATCCGTTGAAGACTCGAAGTCGGAAGATAAAGGAAATCGCAGAGTTAGAAGGCATAGGCTCGTTGATAATCTGTTGCAAGAAGATTTCCAGAGTGTACTGGACGTCCTAGCCATTTCAGCAAAGACACCTGATGAACTCTGA

Protein sequence

MTTVTKKALGLLVESEKGNGSAVSSSQTVDSVEKVKSESNTEKSVEDSKSEDKGNRRVRRHRLVDNLLQEDFQSVLDVLAISAKTPDEL

Homology

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_004139770.1 (PREDICTED: sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 50/146 (34.25%), Postives = 55/146 (37.67%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           KKAL LLVESEKGNGSAVSSSQT DS EKVK                             
Sbjct: 197 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRG 256

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 257 KRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRL 316

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: KGN44116.1 (hypothetical protein Csa_7G193760 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 50/146 (34.25%), Postives = 55/146 (37.67%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           KKAL LLVESEKGNGSAVSSSQT DS EKVK                             
Sbjct: 247 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRG 306

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 307 KRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRL 366

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_022139589.1 (sufE-like protein 1, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-05
Identity = 49/148 (33.11%), Postives = 55/148 (37.16%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           KKALGLLVESEKGNGSA+ SS+T DSVEKVK                             
Sbjct: 196 KKALGLLVESEKGNGSAIPSSKTDDSVEKVKLDSNTDSENPIGDSKSGNGGNDSSGVLGD 255

Query: 66  --------------------------------------------------------VRRH 90
                                                                   V+RH
Sbjct: 256 IGKRIKEKLERELSPVELDVEDVSYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRH 315

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_022941402.1 (sufE-like protein 1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 48/148 (32.43%), Postives = 56/148 (37.84%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           +KALGLLVESEKGNGSA+SSSQ  D+VEKV+                             
Sbjct: 225 RKALGLLVESEKGNGSAISSSQIDDAVEKVESDSKTDAEKPNEESKLGDKGSDNSSVLGS 284

Query: 66  --------------------------------------------------------VRRH 90
                                                                   V+RH
Sbjct: 285 RGKRIKEKLEKDLSPVELNVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRH 344

[Close]

BLAST of Carg24733 vs. NCBI nr
Match: XP_022981518.1 (sufE-like protein 1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 48/148 (32.43%), Postives = 55/148 (37.16%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           +KALGLLVESEKGN SA+SSSQ  D+VEKVK                             
Sbjct: 225 RKALGLLVESEKGNDSAISSSQIDDAVEKVKSDSETDAEKPNEESKLGDKGSDNSGVLGS 284

Query: 66  --------------------------------------------------------VRRH 90
                                                                   V+RH
Sbjct: 285 RGKRIKEKLETELNPVELNVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRH 344

[Close]

BLAST of Carg24733 vs. TrEMBL
Match: tr|A0A0A0K8K1|A0A0A0K8K1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 50/146 (34.25%), Postives = 55/146 (37.67%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           KKAL LLVESEKGNGSAVSSSQT DS EKVK                             
Sbjct: 247 KKALALLVESEKGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRG 306

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 307 KRIKEILERELNPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRL 366

[Close]

BLAST of Carg24733 vs. TrEMBL
Match: tr|A0A1S3BJ54|A0A1S3BJ54_CUCME (LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490176 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-04
Identity = 48/146 (32.88%), Postives = 54/146 (36.99%), Query Frame = 0


Query: 6   KKALGLLVESEKGNGSAVSSSQTVDSVEKVKXXXXXXXXXXXXXXXXXXXXR-------- 65
           KKAL LLVESEKGNGSAVSSSQT  SVEK +                             
Sbjct: 200 KKALALLVESEKGNGSAVSSSQTDYSVEKAEPESNTEKSVVDSKLGDKGNQSSDVLGSRG 259

Query: 66  ------------------------------------------------------VRRHRL 90
                                                                 V+RHRL
Sbjct: 260 KRIKEILERELNPVELYVEDISYQHAGHAGVRGSDGETHFNLKVVSKEFEGKSLVKRHRL 319

The following BLAST results are available for this feature:

BLAST of Carg24733 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139770.1	2.9e-05	34.25	PREDICTED: sufE-like protein 1, chloroplastic/mitochondrial [Cucumis sativus]	[more]
KGN44116.1	2.9e-05	34.25	hypothetical protein Csa_7G193760 [Cucumis sativus]	[more]
XP_022139589.1	8.5e-05	33.11	sufE-like protein 1, chloroplastic/mitochondrial [Momordica charantia]	[more]
XP_022941402.1	1.1e-04	32.43	sufE-like protein 1, chloroplastic/mitochondrial [Cucurbita moschata]	[more]
XP_022981518.1	2.5e-04	32.43	sufE-like protein 1, chloroplastic/mitochondrial [Cucurbita maxima]	[more]

BLAST of Carg24733 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24733 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24733 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8K1\|A0A0A0K8K1_CUCSA	1.9e-05	34.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G193760 PE=4 SV=1	[more]
tr\|A0A1S3BJ54\|A0A1S3BJ54_CUCME	4.7e-04	32.88	LOW QUALITY PROTEIN: sufE-like protein 1, chloroplastic/mitochondrial OS=Cucumis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002634	BolA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24733-RA	Carg24733-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002634	BolA protein	PFAM	PF01722	BolA	coord: 53..88 e-value: 4.6E-6 score: 26.7
None	No IPR available	GENE3D	G3DSA:3.30.300.90		coord: 6..89 e-value: 2.3E-7 score: 33.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24733	Cla003340	Watermelon (97103) v1	carwmB0428
Carg24733	Csa7G193760	Cucumber (Chinese Long) v2	carcuB0464
Carg24733	MELO3C013205	Melon (DHL92) v3.5.1	carmeB0439
Carg24733	ClCG09G021620	Watermelon (Charleston Gray)	carwcgB0423
Carg24733	CSPI07G09340	Wild cucumber (PI 183967)	carcpiB0469
Carg24733	Cucsa.334210	Cucumber (Gy14) v1	carcgyB0499
Carg24733	Lsi02G017980	Bottle gourd (USVL1VR-Ls)	carlsiB391
Carg24733	Cp4.1LG06g08130	Cucurbita pepo (Zucchini)	carcpeB0608
Carg24733	CsGy7G009000	Cucumber (Gy14) v2	carcgybB0440
Carg24733	MELO3C013205.2	Melon (DHL92) v3.6.1	carmedB0442
Carg24733	CsaV3_7G021450	Cucumber (Chinese Long) v3	carcucB0464
Carg24733	Cla97C09G183040	Watermelon (97103) v2	carwmbB0455
Carg24733	Bhi09G001523	Wax gourd	carwgoB0519

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24733	Carg23352	Silver-seed gourd	carcarB088

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24733	Cucurbita maxima (Rimu)	carcmaB0601
Carg24733	Cucurbita maxima (Rimu)	carcmaB0602
Carg24733	Cucurbita moschata (Rifu)	carcmoB0586
Carg24733	Cucurbita moschata (Rifu)	carcmoB0587
Carg24733	Cucurbita pepo (Zucchini)	carcpeB0607