Carg24722 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24722
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_270 : 187747 .. 188198 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAAGAAGCCGAAAATGTAGAGCTTTTCCGTCCGAGGAGCGGCCGGCGGCGGAGGGAGTCAACGCAGCCGAGTTGGAGTTCAAGCTCAAAAGGATAAGAACCTTTTGTCGAATGAATCCGAAATCGGATCGTTTAAGGTTTAAGCGGTTCCATTCACATTGAGACTGGTGTACGGATGCTACGAACACGCTCGGAGATTTTCTTGGGGACTTGGTATGCCGATTGTAGCTTAAGTCGGATCTGTCACTGGAAATTTGACTCATGCTTCTTATCTCCTTCGTTCTGGCCAGCTTTTGCTTTCTCTTCACCGCACCTTATTTCGCTTCATTCTGCCGCTCTCAAACCTCAGTCCGGCTTCTAACCGCTTCATCCCTAGTTTGAACCTGCCGCCTGCCGCGCCTTCTCCGGCAGCATTGGATTTAGGTTGTTCGAGCAATCTCTCTTGA

mRNA sequence

ATGGGGGAAAGAAGCCGAAAATGTAGAGCTTTTCCGTCCGAGGAGCGGCCGGCGGCGGAGGGAGTCAACGCAGCCGAGTTGGAGTTCAAGCTCAAAAGGATAAGAACCTTTTGTCGAATGAATCCGAAATCGGATCGTTTAAGTCCGGCTTCTAACCGCTTCATCCCTAGTTTGAACCTGCCGCCTGCCGCGCCTTCTCCGGCAGCATTGGATTTAGGTTGTTCGAGCAATCTCTCTTGA

Coding sequence (CDS)

ATGGGGGAAAGAAGCCGAAAATGTAGAGCTTTTCCGTCCGAGGAGCGGCCGGCGGCGGAGGGAGTCAACGCAGCCGAGTTGGAGTTCAAGCTCAAAAGGATAAGAACCTTTTGTCGAATGAATCCGAAATCGGATCGTTTAAGTCCGGCTTCTAACCGCTTCATCCCTAGTTTGAACCTGCCGCCTGCCGCGCCTTCTCCGGCAGCATTGGATTTAGGTTGTTCGAGCAATCTCTCTTGA

Protein sequence

MGERSRKCRAFPSEERPAAEGVNAAELEFKLKRIRTFCRMNPKSDRLSPASNRFIPSLNLPPAAPSPAALDLGCSSNLS

Homology

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BLAST of Carg24722 vs. NCBI nr
Match: XP_023525396.1 (4-hydroxyphenylpyruvate dioxygenase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1  MGERSRKCRAFPSEERPAAEGVNAAELEFKLKRIRTFCRMNPKSDR 47
          MG+ +   RA  SEE   AEGVNAAE EFKLK  + F RMNPKSDR
Sbjct: 1  MGKEAENVRA-SSEEAAVAEGVNAAESEFKLKGFKNFVRMNPKSDR 45

The following BLAST results are available for this feature:

BLAST of Carg24722 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525396.1	6.4e-04	63.04	4-hydroxyphenylpyruvate dioxygenase [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24722 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24722 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24722 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24722-RA	Carg24722-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24722	Cucurbita maxima (Rimu)	carcmaB0904
Carg24722	Cucurbita moschata (Rifu)	carcmoB0881
Carg24722	Cucurbita pepo (Zucchini)	carcpeB0909
Carg24722	Cucurbita pepo (Zucchini)	carcpeB0910
Carg24722	Wild cucumber (PI 183967)	carcpiB0669
Carg24722	Cucumber (Chinese Long) v2	carcuB0660
Carg24722	Cucumber (Chinese Long) v3	carcucB0671
Carg24722	Bottle gourd (USVL1VR-Ls)	carlsiB582
Carg24722	Melon (DHL92) v3.5.1	carmeB0638
Carg24722	Melon (DHL92) v3.6.1	carmedB0647
Carg24722	Watermelon (Charleston Gray)	carwcgB0620
Carg24722	Watermelon (97103) v1	carwmB0638
Carg24722	Watermelon (97103) v2	carwmbB0668
Carg24722	Wax gourd	carwgoB0757
Carg24722	Silver-seed gourd	carcarB561
Carg24722	Cucumber (Gy14) v2	carcgybB0636
Carg24722	Cucumber (Gy14) v1	carcgyB0713