Carg24701 (gene) Silver-seed gourd

Overview
NameCarg24701
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein RRNAD1 isoform X4
LocationCucurbita_argyrosperma_scaffold_270 : 28348 .. 28756 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATACGATGTCGTTTGGGCCCAACTCGTAAATGTATATATACGCTACCGCCTCGTCAGCGTGACAGAACAGTTGCGACTGATTTTCGCGGCAACAGGAAATACAGTTGCGATACCGCAGCCGATACTCTGCAATGCACGAGGGCGATCGTCGAGTTTGCCAAACCTTACTCGTTCTTGATCAATACTTCTGTCGTTAATTCTTCAAGGTTTGTTGATTTAATTCTTCATTCGCGCAAGTTTTAAAATCTGCTTATTTGATTTTGATTTTGATTTTCACTCGTGGATGTTCTTTTGTGATATCCATTACGCTACTGCTTCCATTCGATCTTCCGGGATAGACTACGGGAATCTGTTGATAAGGAATGGATGGAGTGGTTGCGCAGGGAACCTGCGCAAAATCTGCACC

mRNA sequence

GTTATACGATGTCGTTTGGGCCCAACTCGTAAATGTATATATACGCTACCGCCTCGTCAGCGTGACAGAACAGTTGCGACTGATTTTCGCGGCAACAGGAAATACAGTTGCGATACCGCAGCCGATACTCTGCAATGCACGAGGGCGATCGTCGAGTTTGCCAAACCTTACTCGTTCTTGATCAATACTTCTGTCGTTAATTCTTCAAGTTTTAAAATCTGCTTATTTGATTTTGATTTTGATTTTCACTCGTGGATGTTCTTTTGTGATATCCATTACGCTACTGCTTCCATTCGATCTTCCGGGATAGACTACGGGAATCTGTTGATAAGGAATGGATGGAGTGGTTGCGCAGGGAACCTGCGCAAAATCTGCACC

Coding sequence (CDS)

GTTATACGATGTCGTTTGGGCCCAACTCGTAAATGTATATATACGCTACCGCCTCGTCAGCGTGACAGAACAGTTGCGACTGATTTTCGCGGCAACAGGAAATACAGTTGCGATACCGCAGCCGATACTCTGCAATGCACGAGGGCGATCGTCGAGTTTGCCAAACCTTACTCGTTCTTGATCAATACTTCTGTCGTTAATTCTTCAAGTTTTAAAATCTGCTTATTTGATTTTGATTTTGATTTTCACTCGTGGATGTTCTTTTGTGATATCCATTACGCTACTGCTTCCATTCGATCTTCCGGGATAGACTACGGGAATCTGTTGATAAGGAATGGATGGAGTGGTTGCGCAGGGAACCTGCGCAAAATCTGCACC

Protein sequence

VIRCRLGPTRKCIYTLPPRQRDRTVATDFRGNRKYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVNSSSFKICLFDFDFDFHSWMFFCDIHYATASIRSSGIDYGNLLIRNGWSGCAGNLRKICT
Homology
[Close]
BLAST of Carg24701 vs. NCBI nr
Match: XP_008444278.1 (PREDICTED: protein RRNAD1 isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. NCBI nr
Match: XP_008444279.1 (PREDICTED: protein RRNAD1 isoform X3 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. NCBI nr
Match: XP_008444281.1 (PREDICTED: protein RRNAD1 isoform X4 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. NCBI nr
Match: XP_008444282.1 (PREDICTED: methyltransferase-like protein 25 isoform X5 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. NCBI nr
Match: XP_016899867.1 (PREDICTED: protein RRNAD1 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. TAIR10
Match: AT1G16650.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 32 NRKYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          + K+SC T A+TL+   AI++F KP+SFLIN  VVN
Sbjct: 3  SNKFSCKTRAETLEWITAIIDFLKPFSFLINAHVVN 38

[Close]
BLAST of Carg24701 vs. TrEMBL
Match: tr|A0A1S3B9I9|A0A1S3B9I9_CUCME (protein RRNAD1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. TrEMBL
Match: tr|A0A1S3B9Z8|A0A1S3B9Z8_CUCME (methyltransferase-like protein 25 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. TrEMBL
Match: tr|A0A1S4DV55|A0A1S4DV55_CUCME (protein RRNAD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. TrEMBL
Match: tr|A0A1S3BAU0|A0A1S3BAU0_CUCME (protein RRNAD1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

[Close]
BLAST of Carg24701 vs. TrEMBL
Match: tr|A0A1S3BAS0|A0A1S3BAS0_CUCME (protein RRNAD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 25 VATDFRGNR----KYSCDTAADTLQCTRAIVEFAKPYSFLINTSVVN 68
          +ATD RGN     KY CDTAA+TLQ  +AI +F KPYSFLIN  VVN
Sbjct: 1  MATDLRGNGGSNCKYKCDTAANTLQWIKAIADFIKPYSFLINAPVVN 47

The following BLAST results are available for this feature:
BLAST of Carg24701 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008444278.11.1e-0563.83PREDICTED: protein RRNAD1 isoform X2 [Cucumis melo][more]
XP_008444279.11.1e-0563.83PREDICTED: protein RRNAD1 isoform X3 [Cucumis melo][more]
XP_008444281.11.1e-0563.83PREDICTED: protein RRNAD1 isoform X4 [Cucumis melo][more]
XP_008444282.11.1e-0563.83PREDICTED: methyltransferase-like protein 25 isoform X5 [Cucumis melo][more]
XP_016899867.11.1e-0563.83PREDICTED: protein RRNAD1 isoform X1 [Cucumis melo][more]
BLAST of Carg24701 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16650.11.7e-0555.56S-adenosyl-L-methionine-dependent methyltransferases superfamily protein[more]
BLAST of Carg24701 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg24701 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9I9|A0A1S3B9I9_CUCME7.2e-0663.83protein RRNAD1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1[more]
tr|A0A1S3B9Z8|A0A1S3B9Z8_CUCME7.2e-0663.83methyltransferase-like protein 25 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A1S4DV55|A0A1S4DV55_CUCME7.2e-0663.83protein RRNAD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1[more]
tr|A0A1S3BAU0|A0A1S3BAU0_CUCME7.2e-0663.83protein RRNAD1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1[more]
tr|A0A1S3BAS0|A0A1S3BAS0_CUCME7.2e-0663.83protein RRNAD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487650 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24701-RACarg24701-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg24701Cucurbita maxima (Rimu)carcmaB0904
Carg24701Cucurbita moschata (Rifu)carcmoB0881
Carg24701Cucurbita pepo (Zucchini)carcpeB0909
Carg24701Watermelon (Charleston Gray)carwcgB0620
Carg24701Watermelon (97103) v1carwmB0637
Carg24701Watermelon (97103) v2carwmbB0667