Carg24696 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24696
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	release factor glutamine methyltransferase
Location	Cucurbita_argyrosperma_scaffold_270 : 6539 .. 7715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATACCTTCTGCAATGCTTTGGCCATTTTTTGTCCATTCAATGTTCGACGATACCGAGGATGATGACGTGTCATTGCTTTGTGATTCACTTGAGGACCAGGGTGATGTCGAGAAGCTGAAGGCTTTGTGTTGCTGTAAATATTCAATACATGTATTAGATCTCCGATTCTTATTGGTAAGAGGAAAACCGTTATTATTTGGTTCTCAATGCTCGAGCGTTCAATGCGATGTAAACAGCGAACTGTGAACACAGCACAGAAATGGAAGAAATGTCAACAAATTTTCAATGATGCTTTAAAATTTGCATCATTTTACCCCCATGTTGAATCCTTACCTTGCATGATTTTATCAAATTCACTGAAAATCAGATTAGAACGTAAAATCAGATTAGAACGTAAGAGTCCAAACAAGCATGACCCATGTTGAATTCTTACCTTGCATGATTTTATCAAATTCACTGAAAATAAGAGTCAAATTCACTGAAAAAGAGTCCAGCATGAAACGTTATGCTAGAATGTAAGAGTGAAACGTGTGCTTTTGTGTATTCGTCCATCAGTCGTATGCTTGTGTATTTGTCCATCGGTCAAATTAGATGTGCCTACTTACCCAATAGACTATTCTTTTCAAAATCTTAATAAGATCTGTGCCTATTTACCCAATAGACTATTCTTTTCAAAATCTTAATAAGATGTGTGCCTATTTACCCAATAGACTATTCTTTTCAAAATCTTACTAACATCACAAATTTAATTTAATCGTCCATCGGTCAAATTAGATGTGTGCCTATTTACCCAATAAATTAGATTTTGTTCAAATTGATGAAATTTATTATCTCTAAACATTTTTACTTCATCTTACACGAGTGATAATTATGAATTTCGTGATAAATCAAACATGTTAGTATGTCAATCTGAATTTCGAGATAAATGGATTAGGTTATTGATTCTCAGTTATTATGAACTTTTAATTTAGAGTCTAATAAAGGACGTGTGCATAAGCTAAGTGTACATAAGTCGGCGAGGCAAGGATCATGGTATGAGCCATTAAAGGACGTCCAAGGAAAGCTAACAGGGATTATTAGTGATCATATTTTTGGCCTACAAGCTGAGGTTGGTAGAACAGTTGCCTTGGATGGAGGCACTAATGCCATGGTTGACCTTATCCATCTATGA

mRNA sequence

ATGACTATACCTTCTGCAATGCTTTGGCCATTTTTTGTCCATTCAATGTTCGACGATACCGAGGATGATGACGTGTCATTGCTTTGTGATTCACTTGAGGACCAGGGTGATGTCGAGAAGCTGAAGGCTTTGTGTTGCTGTAAATATTCAATACATGTATTAGATCTCCGATTCTTATTGTCTAATAAAGGACGTGTGCATAAGCTAAGTGTACATAAGTCGGCGAGGCAAGGATCATGGTATGAGCCATTAAAGGACGTCCAAGGAAAGCTAACAGGGATTATTAGTGATCATATTTTTGGCCTACAAGCTGAGGTTGGTAGAACAGTTGCCTTGGATGGAGGCACTAATGCCATGGTTGACCTTATCCATCTATGA

Coding sequence (CDS)

ATGACTATACCTTCTGCAATGCTTTGGCCATTTTTTGTCCATTCAATGTTCGACGATACCGAGGATGATGACGTGTCATTGCTTTGTGATTCACTTGAGGACCAGGGTGATGTCGAGAAGCTGAAGGCTTTGTGTTGCTGTAAATATTCAATACATGTATTAGATCTCCGATTCTTATTGTCTAATAAAGGACGTGTGCATAAGCTAAGTGTACATAAGTCGGCGAGGCAAGGATCATGGTATGAGCCATTAAAGGACGTCCAAGGAAAGCTAACAGGGATTATTAGTGATCATATTTTTGGCCTACAAGCTGAGGTTGGTAGAACAGTTGCCTTGGATGGAGGCACTAATGCCATGGTTGACCTTATCCATCTATGA

Protein sequence

MTIPSAMLWPFFVHSMFDDTEDDDVSLLCDSLEDQGDVEKLKALCCCKYSIHVLDLRFLLSNKGRVHKLSVHKSARQGSWYEPLKDVQGKLTGIISDHIFGLQAEVGRTVALDGGTNAMVDLIHL

Homology

[Close]

BLAST of Carg24696 vs. NCBI nr
Match: XP_004151022.1 (PREDICTED: hemK methyltransferase family member 1 [Cucumis sativus] >KGN58123.1 hypothetical protein Csa_3G524590 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPL+DVQGKL+GII       SD+IFGLQAEVG+    VALDGGTN M +LIHL
Sbjct: 238 RQGSWYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHL 297

[Close]

BLAST of Carg24696 vs. NCBI nr
Match: XP_008444272.1 (PREDICTED: release factor glutamine methyltransferase [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPL+DVQGKL+GII       SD+IFGLQAEVG+    VALDGGTN M +LIHL
Sbjct: 239 RQGSWYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHL 298

[Close]

BLAST of Carg24696 vs. NCBI nr
Match: XP_022936763.1 (uncharacterized protein LOC111443257 [Cucurbita moschata] >XP_022936764.1 uncharacterized protein LOC111443257 [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPLKDVQGKL+GII       SD+I GLQAEVG+    VALDGGTN M +LIHL
Sbjct: 253 RQGSWYEPLKDVQGKLSGIISNPPYIPSDNIVGLQAEVGKHEPRVALDGGTNGMDELIHL 312

[Close]

BLAST of Carg24696 vs. NCBI nr
Match: XP_022141020.1 (uncharacterized protein LOC111011525 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPLKDVQG+++GII       SD+IFGLQAEV +    VALDGGTN M +LIHL
Sbjct: 237 RQGSWYEPLKDVQGRVSGIISNPPYIPSDNIFGLQAEVCKHEPRVALDGGTNGMDELIHL 296

[Close]

BLAST of Carg24696 vs. NCBI nr
Match: XP_008383021.1 (PREDICTED: release factor glutamine methyltransferase [Malus domestica])

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-10
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSW+EPLKDV+GKL+G +       SD+I GLQAEVGR    VALDGG N M DL+HL
Sbjct: 238 RQGSWFEPLKDVEGKLSGFVSNPPYIPSDNIAGLQAEVGRHEPRVALDGGANGMDDLLHL 297

[Close]

BLAST of Carg24696 vs. TAIR10
Match: AT5G64150.1 (RNA methyltransferase family protein)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           R+GSW+EPLKD++GKL G++       SD I GLQAEVGR    +ALDGG +    L HL
Sbjct: 257 REGSWFEPLKDLEGKLVGLVSNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHL 316

[Close]

BLAST of Carg24696 vs. TrEMBL
Match: tr|A0A1S3BA23|A0A1S3BA23_CUCME (release factor glutamine methyltransferase OS=Cucumis melo OX=3656 GN=LOC103487646 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPL+DVQGKL+GII       SD+IFGLQAEVG+    VALDGGTN M +LIHL
Sbjct: 239 RQGSWYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHL 298

[Close]

BLAST of Carg24696 vs. TrEMBL
Match: tr|A0A0A0L8I9|A0A0A0L8I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524590 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSWYEPL+DVQGKL+GII       SD+IFGLQAEVG+    VALDGGTN M +LIHL
Sbjct: 238 RQGSWYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHL 297

[Close]

BLAST of Carg24696 vs. TrEMBL
Match: tr|A0A2P5D1X1|A0A2P5D1X1_PARAD (Modification methylase HemK OS=Parasponia andersonii OX=3476 GN=PanWU01x14_104670 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-10
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGIISD-------HIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSW+EPLKD +GKLTGIIS+       HI GLQAEVGR    +ALDGG + M DL+HL
Sbjct: 248 RQGSWFEPLKDSEGKLTGIISNPPYIPSSHISGLQAEVGRHEPVIALDGGVDGMDDLLHL 307

[Close]

BLAST of Carg24696 vs. TrEMBL
Match: tr|A0A2P4JZW0|A0A2P4JZW0_QUESU (Release factor glutamine methyltransferase OS=Quercus suber OX=58331 GN=CFP56_07078 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSW++PLKDV+GKL GI+       SD+I GLQAEVGR    +ALDGG N M DL+HL
Sbjct: 247 RQGSWFKPLKDVEGKLAGIVSNPPYIPSDNISGLQAEVGRHEPRLALDGGLNGMDDLLHL 306

[Close]

BLAST of Carg24696 vs. TrEMBL
Match: tr|A0A200Q325|A0A200Q325_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8565g7 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 76  RQGSWYEPLKDVQGKLTGII-------SDHIFGLQAEVGR---TVALDGGTNAMVDLIHL 126
           RQGSW+EPL+DV+GKL G++       SD +FGLQAEVG+    +ALDGG N M DL+HL
Sbjct: 7   RQGSWFEPLEDVKGKLVGLVSNPPYIPSDQLFGLQAEVGKHEPRLALDGGENGMDDLLHL 66

The following BLAST results are available for this feature:

BLAST of Carg24696 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151022.1	1.0e-11	70.00	PREDICTED: hemK methyltransferase family member 1 [Cucumis sativus] >KGN58123.1 ...	[more]
XP_008444272.1	1.0e-11	70.00	PREDICTED: release factor glutamine methyltransferase [Cucumis melo]	[more]
XP_022936763.1	2.2e-11	70.00	uncharacterized protein LOC111443257 [Cucurbita moschata] >XP_022936764.1 unchar...	[more]
XP_022141020.1	1.9e-10	66.67	uncharacterized protein LOC111011525 [Momordica charantia]	[more]
XP_008383021.1	7.2e-10	63.33	PREDICTED: release factor glutamine methyltransferase [Malus domestica]	[more]

BLAST of Carg24696 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64150.1	6.7e-10	53.33	RNA methyltransferase family protein	[more]

BLAST of Carg24696 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24696 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BA23\|A0A1S3BA23_CUCME	6.6e-12	70.00	release factor glutamine methyltransferase OS=Cucumis melo OX=3656 GN=LOC1034876...	[more]
tr\|A0A0A0L8I9\|A0A0A0L8I9_CUCSA	6.6e-12	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524590 PE=4 SV=1	[more]
tr\|A0A2P5D1X1\|A0A2P5D1X1_PARAD	4.8e-10	63.33	Modification methylase HemK OS=Parasponia andersonii OX=3476 GN=PanWU01x14_10467...	[more]
tr\|A0A2P4JZW0\|A0A2P4JZW0_QUESU	1.8e-09	61.67	Release factor glutamine methyltransferase OS=Quercus suber OX=58331 GN=CFP56_07...	[more]
tr\|A0A200Q325\|A0A200Q325_9MAGN	2.4e-09	58.33	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8565g7 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24696-RA	Carg24696-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR18895:SF88	SUBFAMILY NOT NAMED	coord: 72..125
None	No IPR available	PANTHER	PTHR18895	METHYLTRANSFERASE	coord: 72..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24696	Cla023216	Watermelon (97103) v1	carwmB0637
Carg24696	ClCG11G016270	Watermelon (Charleston Gray)	carwcgB0620
Carg24696	Cla97C11G222230	Watermelon (97103) v2	carwmbB0667

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24696	Cucurbita maxima (Rimu)	carcmaB0904
Carg24696	Cucurbita moschata (Rifu)	carcmoB0881
Carg24696	Cucurbita pepo (Zucchini)	carcpeB0909