Carg24666 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24666
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein like
Location	Cucurbita_argyrosperma_scaffold_218 : 33265 .. 36691 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTTGTTCTCAAATTTCTATCAGTTTCAGGCGCCAGGAACAAGGAGGAGCGAAAATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTGATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGATTTGATATCCGTAAAGTCTATATGGTTTAAGAATTAGGGTTCATATAGCAACCATTTTAGGGGAACCAGTGCTGTGAATTTCAATTTTCTTTGCAATTTTTATCTCCTCTTCTTCTTGAACAATTTGAATAGAAATGGCATTCTGGACTTAAAGTGCTTGTTCGCAGTTAGGAAAACAATTACATTGTTTGTTGGAGAAATGAAATTCTTCTGTTGAAACGTAGTTTAGAGCTACTATAGAAAATTTATGGGTTGATCAACTGAAGGGAATGGAAAATGTTTGCATCTAAACTGCAATGTGGATGAACAGTTTGACGAATAGACATTTTGTGAGTACTCTGTTCTTTTTATTTTTGACAAGAAACAAAACTTATCATGAATTAATGAAACAAAGGATCAGAACCCCCAAAATAAATTGAATCCTGAAAAGAGAATCCAACAAAAAAAAAAAAAAAAAAACTTAGATGTGTTGGATGAACATCGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATAGTCCGTTGGTTTGAGGTCTTTTAGGGAATCCCAAAGAAAAGCCATGAGAGCTTATATTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATGTAACATGGTTTCAGAGCCATGCCCTAAACTTAACCATGTCAATAGAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAGAAAAAAAAGGACTCGAGACTCCTCGAAGGCATAGTAAAAAATGACTAAGACTCCTAAAGAAAAGGAGTTGAGCCTCAAGTAAGGGGAGACGTACTTTGTTCGAGGGAGGTGTTTGGATGAAAATACCACGTCGGCTAATTTAGGTAATGACCATGAGTTTATAATCAAGAATACTCTGTCAATTGGTTTGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGATAATATCATATCATTGTGGAGGGTCTCGTTCATCTAACAAGATGAACACCAATGGGAAGCATGAAATCTGGGGGACTCAGTGATCAAACCAATGAAAGAACCTTTGAAGCCAAACCATATGTAAAACCAATATAAAAAAGCCTCCCTTGCGTTAGAGAAGAGACTGAAAGAAATTCCTCTAATGCAATTAGAAGCTCGTGAAATGGATTTTCAAAAGCAAACAATGGTATGAATATCAAACTGTGAAAAAAGGGCTCCAAAAACACCTTTGCACCAAAAAGACTGCAGCCTTAACCAAAGCTTAAAGCCTCAAACAGGCAACCAAACGAAGCTGAAACACTTGAAAGAAGAAACAAAACACCAAAATCCTTAGAGAAACCAACCAGAGCTTGGCAAAAGTGAACACTGACACAACTTTCGTCATGAACCAGTAAAGGAATTCCATAAAACTCGACACCATTGGCTTCACTAAGTGAACCGAAATTGGCTGGCATGGAGGGTGGAGGGTAAGTGAAGGGTCATCAACGGATGAAGAGGCAACTTGCTGATTAGAAGGCACCAAAAGCCTCTTACAACATTCTTTCTTCAATAAAATTTGAATTCAAAGAATTTTCCTCATGACATGGTTGGTATGACGAATACGCCCCAACTTCACGGATATAAGACGAAGGATAGGCTGGATTAGGACCCTTTTTTACATCTTTAACATTCCAGGACTTCGAAGACTCAAAAGGCATAATTAGCCTTTAGGTCTCATCATGCTAGATTAAGTCCCTTTTCGATATAGTTTGACTCTTTTTGTTTGGAGTTGGTTTTGCGTATTTTCTTGTATTTTCTAATTTTTTTTAATGATAGTCCATTAAAAAAAAAAAAAAGCTAAGGTTGACTGTTTTTTCTGATCGGATCTTGTTTGTGAAGACGAATATGTTGGCATCTCGAATCCTGTTTAGTTTTCTGTATGCGAACTTGACTAATGGCTTCGATTTCTGCATTCCACGTAAATGTCGAATATTAGAAAATCCTTAGACCAAAGTAGAATTAAAAAAATTGAACCATTGGATACACAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGGTAAAGTATATGGATTGACATTCTTGATCTTATCTCAGAATGAATTACTCTTGCTTCTTAAATTCTAATACTCATATTCATGCAGAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGATCTGAAGTAGAATTCACATCTAACAGGTTTGTTTTGAAATTTTATCCATGTAAGTTTTTTGTTACACCGTTCTAAATGTTGCAGTTCCACTAGTTTTTATTTAGTTCATCAATATAGAGGCTTTTGTTCTGCTTTCGTTTCACAGGTTTAGAGTTTAAACAAGATTATAGTGTCTGTGTGAGTTAGTAGGAAGAGCTTAAAATTGGCATAACCAAATATAAATCAAATACATCCAGTTATATAATTATCTCTTGTATATGTATGCACATGCATGTAAACCGAGCTCGGATTGGTACCTATTTATTAAACTTAGAGGGTGTTCATCGTCTAGTTCGGTTGGGTTGGGTTGAAAGAATT

mRNA sequence

TATTTTTGTTCTCAAATTTCTATCAGTTTCAGGCGCCAGGAACAAGGAGGAGCGAAAATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGGTAAAAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGATCTGAAGTAGAATTCACATCTAACAGGTTTGTTTTGAAATTTTATCCATGTAAGTTTTTTGTTACACCGTTCTAAATGTTGCAGTTCCACTAGTTTTTATTTAGTTCATCAATATAGAGGCTTTTGTTCTGCTTTCGTTTCACAGGTTTAGAGTTTAAACAAGATTATAGTGTCTGTGTGAGTTAGTAGGAAGAGCTTAAAATTGGCATAACCAAATATAAATCAAATACATCCAGTTATATAATTATCTCTTGTATATGTATGCACATGCATGTAAACCGAGCTCGGATTGGTACCTATTTATTAAACTTAGAGGGTGTTCATCGTCTAGTTCGGTTGGGTTGGGTTGAAAGAATT

Coding sequence (CDS)

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGGTAAAAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGATCTGAAGTAG

Protein sequence

MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRARKMYVRKEPDRVKLFLQVKIKYKHREARTEVVVEAAGFDLK

Homology

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BLAST of Carg24666 vs. NCBI nr
Match: XP_022971306.1 (uncharacterized protein LOC111470060 [Cucurbita maxima])

HSP 1 Score: 411.4 bits (1056), Expect = 2.6e-111
Identity = 250/269 (92.94%), Postives = 254/269 (94.42%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSRSFTPSASVSFSRSFSS IS TSAVGFEDDD XXXXXXXXXXXXXXXXXX        
Sbjct: 61  RSRSFTPSASVSFSRSFSSIISGTSAVGFEDDDXXXXXXXXXXXXXXXXXXXELEDNTVE 120

Query: 121 XXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
             LETAVASDSSSAVVS SEVK+IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240
           ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK
Sbjct: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240

Query: 241 AEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           AEEEKRRARK+YVRKEPDRVKLFLQ K++
Sbjct: 241 AEEEKRRARKIYVRKEPDRVKLFLQNKVQ 269

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BLAST of Carg24666 vs. NCBI nr
Match: XP_023529380.1 (uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.4 bits (890), Expect = 4.6e-92
Identity = 223/275 (81.09%), Postives = 227/275 (82.55%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL RPSA ISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSRPSAAISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTP------SASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXX 120
           RSRSF+P                                 XXXXXXXXXXXXXXXXX   
Sbjct: 61  RSRSFSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEL 120

Query: 121 XXXXXXXXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180
                   LETAVASDSSSAVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS
Sbjct: 121 EDNTVEDGLETAVASDSSSAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180

Query: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRP 240
           GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVV+QLEESTGSVVVSKIGRTVIIYRP
Sbjct: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEESTGSVVVSKIGRTVIIYRP 240

Query: 241 SISKMKAEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           SISKMKAEEEKRRARKMYVRKEPDRVKLFLQ K++
Sbjct: 241 SISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQ 275

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BLAST of Carg24666 vs. NCBI nr
Match: XP_004148536.1 (PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hypothetical protein Csa_7G004710 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.1e-76
Identity = 202/271 (74.54%), Postives = 222/271 (81.92%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS S     HSLLLRS+PSS STF  +PS  A IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHS-----HSLLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXX 120
           PH  R FTPSA +SFSRSFSSTISD S V F++ D     XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEAD-----XXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTP 180
           XXXX          S ++S +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTP
Sbjct: 121 XXXXXXXXXXXXXXSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTP 180

Query: 181 GLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISK 240
           GLATSFIETLEANELLKIK+LGNCP ELEDVVR+L ESTGSVVV++IGRTVIIYRPSI+K
Sbjct: 181 GLATSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITK 240

Query: 241 MKAEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           MKAEEEKRRARK+Y+RKEPDRVK  LQ KI+
Sbjct: 241 MKAEEEKRRARKVYMRKEPDRVKSILQKKIE 261

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BLAST of Carg24666 vs. NCBI nr
Match: XP_008448058.1 (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 2.5e-74
Identity = 195/271 (71.96%), Postives = 219/271 (80.81%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS          LLRSVPSS STF  +PS  A  S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISS-HXXXXXXXXLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXX 120
           PH SR FTPS S+SFSR FSST+S  S V F++ D       XXXXXXXXXXXXXXXXXX
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGD-----DEXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTP 180
           XXXX     AS+ SS V++ +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTP
Sbjct: 121 XXXXXXXXXASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTP 180

Query: 181 GLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISK 240
           GLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+K
Sbjct: 181 GLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITK 240

Query: 241 MKAEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           MKAEEEKRR+RK+Y+RKEPDRVK  LQ K++
Sbjct: 241 MKAEEEKRRSRKIYIRKEPDRVKSILQKKVE 265

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BLAST of Carg24666 vs. NCBI nr
Match: XP_022927947.1 (uncharacterized protein LOC111434725 [Cucurbita moschata])

HSP 1 Score: 228.0 bits (580), Expect = 4.0e-56
Identity = 149/195 (76.41%), Postives = 151/195 (77.44%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSRSF+                    VGFE    XXXXXXXXXXXX              
Sbjct: 61  RSRSFSXXXXXXXXXXXXXXXXXXXXVGFEXXXXXXXXXXXXXXXXVEIEDFELEDNTVE 120

Query: 121 XXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
             LETAVASDSS AVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLK 196
           ATSFIETLEANELLK
Sbjct: 181 ATSFIETLEANELLK 195

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BLAST of Carg24666 vs. TAIR10
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-32
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 147 LTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGEL 206
           L++KEKKELASYAHSLG KLK QLVGKSGVT  +  SF+ETLE NELLK+K+    P EL
Sbjct: 153 LSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDEL 212

Query: 207 EDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRARKMYVRK 256
           ED V+ LEE+TGSV V +IGRTVI+YRPS +KMKAE +K+   +M + +
Sbjct: 213 EDAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITR 261

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BLAST of Carg24666 vs. TAIR10
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-29
Identity = 97/244 (39.75%), Postives = 134/244 (54.92%), Query Frame = 0


Query: 8   SPSHSHLIHSLLLRSVPSSLSTFLCRPSAV--ISAACSHQFKPNSSIFLIRQSPHRSRSF 67
           S + ++LIH LL    P+S      RP +V  +    SH    +SS+ L    P    SF
Sbjct: 6   SSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSLPL----PRPYISF 65

Query: 68  TPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXLET 127
           +P   +   +SFSS          ++D+V                             + 
Sbjct: 66  SP---LLVPKSFSSVDESEQ----DEDNVSLVASLNEIN-------------------DD 125

Query: 128 AVASDSSSAVVSISEVKNIPS--LTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATS 187
                S   +VS+ E +   +  L+ KEK++LASYAH LG KLKSQLVGKSGVT  +  S
Sbjct: 126 GQEDGSELTMVSMRENRRSSALELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLS 185

Query: 188 FIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEE 247
           F+ETLE NELLK+K+   CPGELED++ +LEE+TGSV V +I RTVI+YRPS +K+KA+E
Sbjct: 186 FVETLEKNELLKVKIHRTCPGELEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADE 219

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BLAST of Carg24666 vs. Swiss-Prot
Match: sp|P54454|YQEI_BACSU (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN=yqeI PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-08
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 147 LTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGEL 206
           LT K+K+ L S AH L    +   VGK GV   +     E LEA EL+K+ VL NC  + 
Sbjct: 2   LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 61

Query: 207 EDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE 243
            DV   L + + S +V  IG T+++Y+ S    + E
Sbjct: 62  NDVAEALVKGSRSQLVQTIGNTIVLYKESKENKQIE 94

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BLAST of Carg24666 vs. Swiss-Prot
Match: sp|P0AGK6|YHBY_ECO57 (RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Carg24666 vs. Swiss-Prot
Match: sp|P0AGK5|YHBY_ECOL6 (RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yhbY PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Carg24666 vs. Swiss-Prot
Match: sp|P0AGK4|YHBY_ECOLI (RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

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BLAST of Carg24666 vs. TrEMBL
Match: tr|A0A0A0K2C3|A0A0A0K2C3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 202/271 (74.54%), Postives = 222/271 (81.92%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS S     HSLLLRS+PSS STF  +PS  A IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHS-----HSLLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXX 120
           PH  R FTPSA +SFSRSFSSTISD S V F++ D     XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEAD-----XXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTP 180
           XXXX          S ++S +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTP
Sbjct: 121 XXXXXXXXXXXXXXSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTP 180

Query: 181 GLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISK 240
           GLATSFIETLEANELLKIK+LGNCP ELEDVVR+L ESTGSVVV++IGRTVIIYRPSI+K
Sbjct: 181 GLATSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITK 240

Query: 241 MKAEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           MKAEEEKRRARK+Y+RKEPDRVK  LQ KI+
Sbjct: 241 MKAEEEKRRARKVYMRKEPDRVKSILQKKIE 261

[Close]

BLAST of Carg24666 vs. TrEMBL
Match: tr|A0A1S3BJF7|A0A1S3BJF7_CUCME (uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 195/271 (71.96%), Postives = 219/271 (80.81%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPS--AVISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS          LLRSVPSS STF  +PS  A  S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISS-HXXXXXXXXLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVXXXXXXXXXXXXXXXXXXXXXXXX 120
           PH SR FTPS S+SFSR FSST+S  S V F++ D       XXXXXXXXXXXXXXXXXX
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGD-----DEXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTP 180
           XXXX     AS+ SS V++ +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTP
Sbjct: 121 XXXXXXXXXASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTP 180

Query: 181 GLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISK 240
           GLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+K
Sbjct: 181 GLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSITK 240

Query: 241 MKAEEEKRRARKMYVRKEPDRVKLFLQVKIK 270
           MKAEEEKRR+RK+Y+RKEPDRVK  LQ K++
Sbjct: 241 MKAEEEKRRSRKIYIRKEPDRVKSILQKKVE 265

[Close]

BLAST of Carg24666 vs. TrEMBL
Match: tr|A0A2N9FDB4|A0A2N9FDB4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16749 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 96/119 (80.67%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 139 SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKV 198
           SE+K +PSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT  +A+SFIETLEANELLKIK+
Sbjct: 159 SELKLLPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTVNVASSFIETLEANELLKIKI 218

Query: 199 LGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRARKMYVRKEP 258
              CPGEL+D V+QLEE+TGSVVV +IGRTVIIYRPSI+KMKAEE+KR+ARK++VRK+P
Sbjct: 219 HNTCPGELDDAVKQLEEATGSVVVGQIGRTVIIYRPSITKMKAEEKKRQARKVFVRKDP 277

[Close]

BLAST of Carg24666 vs. TrEMBL
Match: tr|A0A2P4H4R8|A0A2P4H4R8_QUESU (Putative rna-binding protein yqei OS=Quercus suber OX=58331 GN=CFP56_14690 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 96/117 (82.05%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 140 EVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVL 199
           E+K +PSLTVKEKK+LASYAHSLGKKLKSQLVGKSGVT  +ATSFIETLE+NELLKIK+ 
Sbjct: 27  ELKLLPSLTVKEKKDLASYAHSLGKKLKSQLVGKSGVTANVATSFIETLESNELLKIKIH 86

Query: 200 GNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRARKMYVRKE 257
             CPGEL+DVV+QLEE+TGSVVVS+IGRTVIIYRPSI+KMKAEE+KR+ARK++VRKE
Sbjct: 87  NTCPGELDDVVKQLEEATGSVVVSQIGRTVIIYRPSITKMKAEEKKRQARKVFVRKE 143

[Close]

BLAST of Carg24666 vs. TrEMBL
Match: tr|V4SI46|V4SI46_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028627mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.1e-41
Identity = 96/136 (70.59%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 137 SISEVKN-------IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLE 196
           ++ EVK+       +P LTVKEKKELASYAHSLGKKLK QLVGKSGVT G+ TSFIETLE
Sbjct: 230 AVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLE 289

Query: 197 ANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRAR 256
           ANELLKIK+   CPGELEDVV+QLEE+TGSVVVS+IG+TVIIYRPS++KMK EE+K++AR
Sbjct: 290 ANELLKIKIHRTCPGELEDVVKQLEEATGSVVVSQIGQTVIIYRPSLTKMKLEEKKQQAR 349

Query: 257 KMYVRKEPDRVKLFLQ 266
           ++YVRKE     L L+
Sbjct: 350 RVYVRKESKLKPLLLK 365

The following BLAST results are available for this feature:

BLAST of Carg24666 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971306.1	2.6e-111	92.94	uncharacterized protein LOC111470060 [Cucurbita maxima]	[more]
XP_023529380.1	4.6e-92	81.09	uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]	[more]
XP_004148536.1	2.1e-76	74.54	PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus] >KGN43169.1 hy...	[more]
XP_008448058.1	2.5e-74	71.96	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]
XP_022927947.1	4.0e-56	76.41	uncharacterized protein LOC111434725 [Cucurbita moschata]	[more]

BLAST of Carg24666 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39040.1	3.8e-32	64.22	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	3.0e-29	39.75	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

BLAST of Carg24666 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P54454\|YQEI_BACSU	3.6e-08	37.50	Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]
sp\|P0AGK6\|YHBY_ECO57	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1	[more]
sp\|P0AGK5\|YHBY_ECOL6	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ...	[more]
sp\|P0AGK4\|YHBY_ECOLI	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 ...	[more]

BLAST of Carg24666 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2C3\|A0A0A0K2C3_CUCSA	1.4e-76	74.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV=1	[more]
tr\|A0A1S3BJF7\|A0A1S3BJF7_CUCME	1.7e-74	71.96	uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=...	[more]
tr\|A0A2N9FDB4\|A0A2N9FDB4_FAGSY	2.0e-43	80.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16749 PE=4 SV=1	[more]
tr\|A0A2P4H4R8\|A0A2P4H4R8_QUESU	2.0e-43	82.05	Putative rna-binding protein yqei OS=Quercus suber OX=58331 GN=CFP56_14690 PE=4 ...	[more]
tr\|V4SI46\|V4SI46_9ROSI	7.1e-41	70.59	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028627mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035920	YhbY_like_sf
IPR001890	RNA-binding_CRM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24666-RA	Carg24666-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 147..233 e-value: 3.8E-23 score: 92.9
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 147..233 e-value: 1.6E-15 score: 57.0
IPR001890	RNA-binding, CRM domain	PRODOM	PD010559		coord: 153..235 e-value: 2.0E-26 score: 296.0
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 145..244 score: 16.909
IPR035920	YhbY-like superfamily	GENE3D	G3DSA:3.30.110.60		coord: 146..251 e-value: 1.3E-25 score: 91.1
IPR035920	YhbY-like superfamily	SUPERFAMILY	SSF75471	YhbY-like	coord: 147..235
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 5..257
None	No IPR available	PANTHER	PTHR31846:SF27	RNA-BINDING CRS1 / YHBY CRM DOMAIN PROTEIN	coord: 5..257

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24666	Cla015892	Watermelon (97103) v1	carwmB0165
Carg24666	Csa7G004710	Cucumber (Chinese Long) v2	carcuB0194
Carg24666	MELO3C013428	Melon (DHL92) v3.5.1	carmeB0180
Carg24666	ClCG02G004640	Watermelon (Charleston Gray)	carwcgB0167
Carg24666	CSPI07G00310	Wild cucumber (PI 183967)	carcpiB0201
Carg24666	Cucsa.377880	Cucumber (Gy14) v1	carcgyB0215
Carg24666	CmaCh11G010810	Cucurbita maxima (Rimu)	carcmaB0237
Carg24666	CmoCh11G011040	Cucurbita moschata (Rifu)	carcmoB0245
Carg24666	Cp4.1LG04g01020	Cucurbita pepo (Zucchini)	carcpeB0254
Carg24666	CsGy7G000270	Cucumber (Gy14) v2	carcgybB0188
Carg24666	MELO3C013428.2	Melon (DHL92) v3.6.1	carmedB0184
Carg24666	CsaV3_7G000290	Cucumber (Chinese Long) v3	carcucB0201
Carg24666	Cla97C02G031620	Watermelon (97103) v2	carwmbB0180
Carg24666	Bhi05G001551	Wax gourd	carwgoB0226

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24666	Wax gourd	carwgoB0225
Carg24666	Silver-seed gourd	carcarB212
Carg24666	Cucurbita maxima (Rimu)	carcmaB0238
Carg24666	Cucurbita moschata (Rifu)	carcmoB0246
Carg24666	Cucurbita pepo (Zucchini)	carcpeB0252