Carg24659 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24659
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Polygalacturonase/glycoside hydrolase family protein
Location	Cucurbita_argyrosperma_scaffold_269 : 155266 .. 157262 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCACACCTTCCCCAAACAGCTCAGTTTCTCTTTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATGTAAGAAAAGCAAGAACCTTCTCCAATGGCTTCCTTCATCATCCTCTCTTCAAGAAAGCTTCCATTTTTAATGCCTTTTAGCTTCAAATCCACCGACCCATTTCCCATTTTTGCATTTTGAATAAATTCTTGCAAGCTTTTTTTAAATTTTTTATAATTTTTTTTGGAGTTTTGAATAATTTTAAAATGCTGTTCTTGTTCTCACAGGCGGTGAAAATGACGTTTTTGGTAGTTGTTTTGGCGGCGGCGGGGGCGGCGTTGATGGGACAAGTTGAGGGAAGAAAGGTGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATTAGTTGCAGAGCTCACACTGCTTCAATAACGGAGTTCGGCGGCGTTGGCGACGGCGAGACGTCGAATACGAAGGCGTTTCAGGCGGCGGTGGAGAGGTTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACCGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCCGTTCTTCTCGCTTCTCAGGTAGAAATAAATAACCTTTTATTTTCCTCTAAATTTAAATAAATAAATAAATATATTATTTATTGGGGTTGAATTTAAAAAAAAATTAAAATAATAATAATAATAATTAAAAAAAAAAAAAAATTATATATTAGTTCACGAGTGATGTGTTACTAGATCCAAATTTGTTAAAAATATTTATAATAGAGTTGCAGCATCACGTGAATTGATAGCTTCATATTTGTTTCCTATCCTTTTTTTTTTTATTTAAAAAAAAATAAAATTTTAAATAAGGATAAAAATGAGAGTAATTATAAGTGTGGAGAACAATGAGTTTCTATTGTTGATGCCTTTTGCTTCCACAATTCATAGGACTCTTGTTATGGGTCGGGTAGGTTAAGGTTCAAATTCCTCCTTCCCGTAAAATTCATTTTGTTCAAAAGGTTAGAGGTTCAAATTCTATCTTCATGTAAAATTCAGGTTCAAGAGATCAGAGGGTCAAATTCGTCATTCCCATAAAATTCACTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCATTATGTAGAATTCACTTTGTTCGAGAGGTTAGAGGTTCAAATTCCTCCTTATTAGAGGTTCCTCCTTCCTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCATTATGTAGAATTCACTTTGTTCGAGAGGTTAGAGGTTCAAATTCCTCCTTCCTATAGAATTCATTTTGTTCGAGAGGTTAGAGGTTCAATTCCTCCTTATTAGAGGTTCAAATTCCTCCCACCTGTAAAATTCACTTTGTTCGGGAGGTTAGAGGTTCAAATTCCTCCCACCTGTAAAATTCACTTTGATCGGGAGGTTAGAGGTTCAAATTCCTCCCTCCCGTAAAATTCACTTTGTTTGGGAGGCTAGAGGTTCAAATTCCTCATTCCCGTAAAATTCACTATGCTCGAGAGGTCATAGCTTCAAATGGGTTTGAATTCACAACCTCCAAATTTAATAATATATTAAATTACCATTAAGTTGAAGGTATGAATCTCTGTTTTTAGATGAGGGGCTGTTATGGTAGATGGGGTAAGTTTGATGTTGTCATTAAGGTAAAGACTTTAAGAAACTGAAGTGATTAGTCAAAAGTGGGAGTAACCAACTCTCTAAGCTCAAGGTTCATCCCCACGAGCACGAACAATTATCTAATTTTGATCGGTCGAATCGTCTCGACTCATCTATAGCTCGAGACTGATTTTCAACTACTTCAATAGGATCTAAACGAATGGCCGGTGATCGAACCGTTGCCATCCTACGGTCATGGAAGGGACACATCAGGGGGAAGGTACATCAGTTTAATATTTGGAACAAATCTCACTGATGTTGTCGTCACA

mRNA sequence

ACTCACACCTTCCCCAAACAGCTCAGTTTCTCTTTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATATGAGGGGCTGTTATGGTAGATGGGGTAAGTTTGATGTTGTCATTAAGGATCTAAACGAATGGCCGGTGATCGAACCGTTGCCATCCTACGGTCATGGAAGGGACACATCAGGGGGAAGGTACATCAGTTTAATATTTGGAACAAATCTCACTGATGTTGTCGTCACA

Coding sequence (CDS)

ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATATGAGGGGCTGTTATGGTAGATGGGGTAAGTTTGATGTTGTCATTAAGGATCTAAACGAATGGCCGGTGATCGAACCGTTGCCATCCTACGGTCATGGAAGGGACACATCAGGGGGAAGGTACATCAGTTTAATATTTGGAACAAATCTCACTGATGTTGTCGTCACA

Protein sequence

MPMEELCKNPIKAHMRGCYGRWGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

Homology

[Close]

BLAST of Carg24659 vs. NCBI nr
Match: XP_023540734.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +DLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 130 QDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 170

[Close]

BLAST of Carg24659 vs. NCBI nr
Match: XP_022935413.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +DLNEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 129 QDLNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 169

[Close]

BLAST of Carg24659 vs. NCBI nr
Match: XP_004133855.1 (PREDICTED: probable polygalacturonase [Cucumis sativus] >KGN56496.1 hypothetical protein Csa_3G121720 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 135 QDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 175

[Close]

BLAST of Carg24659 vs. NCBI nr
Match: XP_008438007.1 (PREDICTED: probable polygalacturonase [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 135 QDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 175

[Close]

BLAST of Carg24659 vs. NCBI nr
Match: XP_022974569.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 127 QDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 167

[Close]

BLAST of Carg24659 vs. TAIR10
Match: AT4G33440.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-13
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           KDL+EWP+IEPLPSYG GR+  GGR+ISLI G NLT+VV+T
Sbjct: 141 KDLDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVIT 181

[Close]

BLAST of Carg24659 vs. TAIR10
Match: AT3G61490.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 27/41 (65.85%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +DLNE+P+++ LPSYG GRD +GGR+ SLIFGTNL+DV++T
Sbjct: 114 QDLNEYPILKALPSYGRGRDAAGGRFASLIFGTNLSDVIIT 154

[Close]

BLAST of Carg24659 vs. TAIR10
Match: AT4G23500.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 33  NEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +++ VIEPLPSYG GRDT GGR+ISL+FG+NLTDVV+T
Sbjct: 140 SDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVIT 177

[Close]

BLAST of Carg24659 vs. TAIR10
Match: AT3G48950.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSG-GRYISLIFGTNLTDVVVT 71
           +D +EWPVI PLPSYG GRD +G GR+ SLI GTNLTDVV+T
Sbjct: 114 QDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVIT 155

[Close]

BLAST of Carg24659 vs. TAIR10
Match: AT2G23900.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-10
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D +E+PV+ PLPSYG GRD +G  + SLI GTNLTDVV+T
Sbjct: 125 QDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVIT 165

[Close]

BLAST of Carg24659 vs. Swiss-Prot
Match: sp|A7PZL3|PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D+++WPVI+PLPSYG GRD + GRY SLIFGTNLTDV++T
Sbjct: 132 QDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIIT 172

[Close]

BLAST of Carg24659 vs. TrEMBL
Match: tr|A0A1S3AUZ9|A0A1S3AUZ9_CUCME (probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103483253 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 135 QDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 175

[Close]

BLAST of Carg24659 vs. TrEMBL
Match: tr|A0A0A0L8V4|A0A0A0L8V4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121720 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Sbjct: 135 QDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVIT 175

[Close]

BLAST of Carg24659 vs. TrEMBL
Match: tr|A0A2R6Q8G2|A0A2R6Q8G2_ACTCH (Polygalacturonase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20040 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D+NEWPV++PLPSYG GRDT+GGRYISLIFGTNLTDVVVT
Sbjct: 122 QDINEWPVVDPLPSYGRGRDTTGGRYISLIFGTNLTDVVVT 162

[Close]

BLAST of Carg24659 vs. TrEMBL
Match: tr|K4C131|K4C131_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101255793 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 30  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           +D+NEW VI+PLPSYGHGRDTSGGRYISL+FGTNLTDV++T
Sbjct: 129 QDINEWAVIDPLPSYGHGRDTSGGRYISLLFGTNLTDVIIT 169

[Close]

BLAST of Carg24659 vs. TrEMBL
Match: tr|A0A2P2IJM8|A0A2P2IJM8_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 22  WGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT 71
           W    +  +D NEWPVI+PLPSYG GRDT GGRYISLIFGTNLTDVV+T
Sbjct: 115 WDAVLLSSQDENEWPVIDPLPSYGRGRDTEGGRYISLIFGTNLTDVVIT 163

The following BLAST results are available for this feature:

BLAST of Carg24659 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540734.1	4.2e-15	95.12	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022935413.1	5.4e-15	92.68	probable polygalacturonase [Cucurbita moschata]	[more]
XP_004133855.1	3.5e-14	90.24	PREDICTED: probable polygalacturonase [Cucumis sativus] >KGN56496.1 hypothetical...	[more]
XP_008438007.1	3.5e-14	90.24	PREDICTED: probable polygalacturonase [Cucumis melo]	[more]
XP_022974569.1	3.5e-14	90.24	probable polygalacturonase [Cucurbita maxima]	[more]

BLAST of Carg24659 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33440.1	2.8e-13	73.17	Pectin lyase-like superfamily protein	[more]
AT3G61490.1	1.4e-12	65.85	Pectin lyase-like superfamily protein	[more]
AT4G23500.1	5.2e-12	73.68	Pectin lyase-like superfamily protein	[more]
AT3G48950.1	5.8e-11	71.43	Pectin lyase-like superfamily protein	[more]
AT2G23900.1	3.7e-10	63.41	Pectin lyase-like superfamily protein	[more]

BLAST of Carg24659 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7PZL3\|PGLR_VITVI	1.0e-12	70.73	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]

BLAST of Carg24659 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUZ9\|A0A1S3AUZ9_CUCME	2.3e-14	90.24	probable polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103483253 PE=3 SV=1	[more]
tr\|A0A0A0L8V4\|A0A0A0L8V4_CUCSA	2.3e-14	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121720 PE=3 SV=1	[more]
tr\|A0A2R6Q8G2\|A0A2R6Q8G2_ACTCH	2.0e-13	85.37	Polygalacturonase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc2...	[more]
tr\|K4C131\|K4C131_SOLLC	2.0e-13	82.93	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101255793 PE=3 SV=1	[more]
tr\|A0A2P2IJM8\|A0A2P2IJM8_RHIMU	3.4e-13	73.47	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24659-RA	Carg24659-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 30..70
None	No IPR available	PANTHER	PTHR31339:SF7	POLYGALACTURONASE-RELATED	coord: 30..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24659	Cla97C05G081690	Watermelon (97103) v2	carwmbB0405

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24659	Cucumber (Chinese Long) v3	carcucB0417
Carg24659	Bottle gourd (USVL1VR-Ls)	carlsiB350
Carg24659	Melon (DHL92) v3.5.1	carmeB0389
Carg24659	Melon (DHL92) v3.6.1	carmedB0393
Carg24659	Watermelon (Charleston Gray)	carwcgB0376
Carg24659	Watermelon (97103) v1	carwmB0378
Carg24659	Wax gourd	carwgoB0469
Carg24659	Silver-seed gourd	carcarB409
Carg24659	Cucumber (Gy14) v2	carcgybB0392
Carg24659	Cucumber (Gy14) v1	carcgyB0447
Carg24659	Cucurbita maxima (Rimu)	carcmaB0534
Carg24659	Cucurbita maxima (Rimu)	carcmaB0535
Carg24659	Cucurbita moschata (Rifu)	carcmoB0520
Carg24659	Cucurbita moschata (Rifu)	carcmoB0521
Carg24659	Cucurbita pepo (Zucchini)	carcpeB0536
Carg24659	Cucurbita pepo (Zucchini)	carcpeB0537
Carg24659	Wild cucumber (PI 183967)	carcpiB0417
Carg24659	Cucumber (Chinese Long) v2	carcuB0414