Carg24543 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24543
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Squamosa promoter binding-like protein
Location	Cucurbita_argyrosperma_scaffold_330 : 29833 .. 32705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAGGGTGGAATTATTATAGGAAGGGAACATTATTTGGTGGTTGAAAATAAAGGATTGAAAATAAAGGAAGGGCGACACTGAAGCTCAAAATGAGTCTGGCTTGCCTGACATTGGCATTTAAACCTTCCCTTTTTGGTGGTTGGGGTTGAGCATCTTTTTAATTCTTCTGCGTTCTTCGTTTTTACTCGCTTTATCTCACTGTATCGTCACTGATTTTAAACCCTCCCCCTTCCTCTTCTTTTACGATCGCGATTAACTTCTTCTTGCATTGCACCATTTTTCATTGCAGGCATGCCTTGATGCTTCAGAACGGAGGATCATCGAAGCAGCCATTGGAAGAAGCATATCAGAAGGTGAATGAACGGCTCAGGCAATTACAAGGTGTGTGTCTTTCCTTGAATTTTCCACTCATTTGATTTGTTTATTGTGTGTAGCGAGAGGTCATCAGCAAGAAGCATCAAAAGGAGTGGGGGCAGACAGCTCATCACCAGTTTCGGGCAAATAATTATAGTTTGCTTTCCCTTTCCCTTTCCCTTGAAAAAGGAAGAAACAATAAATATTGGCATGCTTTTCCTTTCTGGGGTTTGTAAGGAGCTTTCAAGTTTCAAGTTCCCATAAGAAATTTGATGGTGTGTGTGCATTTACCTTTTGTTTCTTGAGAATTGAAACCCCCACCCACCAAATAAAGAAAGAAAACATGCCAAGAAACGTGAAACACAATGGGGTTGGCCTATCCACTTGCTCTGCCTGTCTCCACCACCATCCATTTTTGAACAACTTCTCTCCTTTCCTTAGTTAGGCACCAAAAAGCTGTCTCTCAAGCTCCCACATCTTATTTTTTGGCTAACAAACTTTAATTGCTTGGTGGAATCCTTGTCAGTGAATGAATGGTTGTGTAAAATAGGAACCCATTTGTCCTCTGCTGCTCTAGTCTGCAACTACTCTTCATCCTTCATTTTTATTTTAGTCTTCTTACTTATTATTCTTCTACTATCTGGAACTGCTAAAATCAAAGAGCCACAATCACCACTGATGTGATGTTTTTTGTGTTTGGTTTAAAAGACATGCAAATAACTGTGTTCTGTTTCTTGTATTGTTGGCTCCCTGTATATTAATTAGTGGGCTCTGTACTTGTTTTATGCATTTCTTGTCGGTCATAAGGTACTTGATACTAGTTTTGTGGGCTTGGTTGCAAGTAAAATTTTCCAATTACTTGGGGATTCTTCTTACGCGGTTTTATCTCATGTTTTTCTTTTCGGTTTCTGTGTTCTTCAGGTGTTTAATTTAATGCATTCTTGAAGTCGTTATAGAAGAGCGATTCAAGCTCCGTAAAGGTGTTTTTTAAGTGGAAAAGAAGCAAATAACTAAAGAATTTCTGTATGGACTGGAACTTGAAGGCCCCATATTGGGATTTCACTCAATTAGAACACGATGCATCAAAGAACATTAATACAATAGGTGCATCCAACAACTTTGTGGAACATAGGACGACAACTTCTAGAGATTTCTCGGTTGATTTGAAACTTGGCCAGGTCAGCCATCTTGGAACAAAATATGCGGTCAACAAACTTAAAATGGCACCATCCCCTTCAGAACCATCCAAGAGGGCAAGAGGATGTGGGAACGGGGCTCAGCCGTTGTCTTGCCTTGTTGATGGATGCGTTTCAGACCTAAGCAACTATAGAGATTACCACAGGCGCCACAAGGTCTGCGAGCTCCATTCAAAGACTCCACAGGTCACAATTGGTGGCCTTAAACAAAGGTTCTGTCAGCAGTGTAGTAGGTAGTTTCTGGAGCATTAACATCAGCTTTTATGTTTTGAGTTTTAATAGGATTGTTAGGAGGGAGTCCACGTTCGCTAATTTAGGGAATGATCATGGGCTTATAAGTAAGGAATACATCTCTATTGTTATGAGTTCTTTTGAGAAGCCCAAAGCAAAGTGACGAGAGCTTAGGCTCAAAGTGGACAATATCGTAATATTGTGGAGATCCGTGATTCCTAACAAATAGTTTCTATGCATTCCCGTCTTATATCTAGTTGATTAATAGTGCTAGTTGCTCATTAATAGTTACACTCTGTATAGGTTCCATTCATTAGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAACGTCTGGATGGACACAATAGAAGGCGACGGAAGCCACAGCCAGAGTCCCTATCTCATTACCAAGGTTTTTGATATGGATCCATCTTTATTTCCGTTGTGAACAGCAAATTCTTGCAGTTTTAACAAGCCATTTTCTGGTTTCAGTTTCCCCATTTATACCATTTTCTACCTCATATGTCTATCCATCATCTACAACTGTTGCGAACCATTCATGGTGCGGAATTTCAAACACTAAGGCAGATGCAAGCCTTCATACTCAGCAACACTCAACCCATTTCCCTGATAACCACCATATGTATCTTGGATCGTCATCTAATGATAGCATCCACAAAATTCCAAAGCAGGTCACATTTCTGCAAAGCGACAATCTGGAAACTTTGGTCTGCCAGCCCCTTGATTTTTCAGAAAATGCAGGCGGTCGGGGCAAATTGTTATTTGACAGATTTTCAAATCCAGGCCATGAATCGGATTGTGCTCTCTCTCTTCTGTCATCTTTGCAGACACGGTCATCAGGGGTTGGTTTAAGCCAACCCGACCAGGACTCTAATCTAATATCCTTCATGCAGCCATTAGATGTGAGCTTAGGACATCACAACAGCTTGGACCCACTTAATTCAGTTCTGAATGGCAGTGTGAGCAATGCAGATATCAGTTGCTCGGGAATGTTTCAGAGTGCTTCTGATGATGGAGGGAGAGAAGCTCCTCCACCACCATCCCTTCCTTTTCACTGGCAGTAA

mRNA sequence

GAAGAGGGTGGAATTATTATAGGAAGGGAACATTATTTGGTGGTTGAAAATAAAGGATTGAAAATAAAGGAAGGGCGACACTGAAGCTCAAAATGAGTCTGGCTTGCCTGACATTGGCATTTAAACCTTCCCTTTTTGGTGGTTGGGGTTGAGCATCTTTTTAATTCTTCTGCGTTCTTCGTTTTTACTCGCTTTATCTCACTGTATCGTCACTGATTTTAAACCCTCCCCCTTCCTCTTCTTTTACGATCGCGATTAACTTCTTCTTGCATTGCACCATTTTTCATTGCAGGCATGCCTTGATGCTTCAGAACGGAGGATCATCGAAGCAGCCATTGGAAGAAGCATATCAGAAGGTGAATGAACGGCTCAGGCAATTACAAGGTGTTTAATTTAATGCATTCTTGAAGTCGTTATAGAAGAGCGATTCAAGCTCCGTAAAGGTGTTTTTTAAGTGGAAAAGAAGCAAATAACTAAAGAATTTCTGTATGGACTGGAACTTGAAGGCCCCATATTGGGATTTCACTCAATTAGAACACGATGCATCAAAGAACATTAATACAATAGGTGCATCCAACAACTTTGTGGAACATAGGACGACAACTTCTAGAGATTTCTCGGTTGATTTGAAACTTGGCCAGGTCAGCCATCTTGGAACAAAATATGCGGTCAACAAACTTAAAATGGCACCATCCCCTTCAGAACCATCCAAGAGGGCAAGAGGATGTGGGAACGGGGCTCAGCCGTTGTCTTGCCTTGTTGATGGATGCGTTTCAGACCTAAGCAACTATAGAGATTACCACAGGCGCCACAAGGTCTGCGAGCTCCATTCAAAGACTCCACAGGTCACAATTGGTGGCCTTAAACAAAGGTTCTGTCAGCAGTGTAGTAGGTTCCATTCATTAGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAACGTCTGGATGGACACAATAGAAGGCGACGGAAGCCACAGCCAGAGTCCCTATCTCATTACCAAGTTTCCCCATTTATACCATTTTCTACCTCATATGTCTATCCATCATCTACAACTGTTGCGAACCATTCATGGTGCGGAATTTCAAACACTAAGGCAGATGCAAGCCTTCATACTCAGCAACACTCAACCCATTTCCCTGATAACCACCATATGTATCTTGGATCGTCATCTAATGATAGCATCCACAAAATTCCAAAGCAGGTCACATTTCTGCAAAGCGACAATCTGGAAACTTTGGTCTGCCAGCCCCTTGATTTTTCAGAAAATGCAGGCGGTCGGGGCAAATTGTTATTTGACAGATTTTCAAATCCAGGCCATGAATCGGATTGTGCTCTCTCTCTTCTGTCATCTTTGCAGACACGGTCATCAGGGGTTGGTTTAAGCCAACCCGACCAGGACTCTAATCTAATATCCTTCATGCAGCCATTAGATGTGAGCTTAGGACATCACAACAGCTTGGACCCACTTAATTCAGTTCTGAATGGCAGTGTGAGCAATGCAGATATCAGTTGCTCGGGAATGTTTCAGAGTGCTTCTGATGATGGAGGGAGAGAAGCTCCTCCACCACCATCCCTTCCTTTTCACTGGCAGTAA

Coding sequence (CDS)

ATGGACTGGAACTTGAAGGCCCCATATTGGGATTTCACTCAATTAGAACACGATGCATCAAAGAACATTAATACAATAGGTGCATCCAACAACTTTGTGGAACATAGGACGACAACTTCTAGAGATTTCTCGGTTGATTTGAAACTTGGCCAGGTCAGCCATCTTGGAACAAAATATGCGGTCAACAAACTTAAAATGGCACCATCCCCTTCAGAACCATCCAAGAGGGCAAGAGGATGTGGGAACGGGGCTCAGCCGTTGTCTTGCCTTGTTGATGGATGCGTTTCAGACCTAAGCAACTATAGAGATTACCACAGGCGCCACAAGGTCTGCGAGCTCCATTCAAAGACTCCACAGGTCACAATTGGTGGCCTTAAACAAAGGTTCTGTCAGCAGTGTAGTAGGTTCCATTCATTAGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAACGTCTGGATGGACACAATAGAAGGCGACGGAAGCCACAGCCAGAGTCCCTATCTCATTACCAAGTTTCCCCATTTATACCATTTTCTACCTCATATGTCTATCCATCATCTACAACTGTTGCGAACCATTCATGGTGCGGAATTTCAAACACTAAGGCAGATGCAAGCCTTCATACTCAGCAACACTCAACCCATTTCCCTGATAACCACCATATGTATCTTGGATCGTCATCTAATGATAGCATCCACAAAATTCCAAAGCAGGTCACATTTCTGCAAAGCGACAATCTGGAAACTTTGGTCTGCCAGCCCCTTGATTTTTCAGAAAATGCAGGCGGTCGGGGCAAATTGTTATTTGACAGATTTTCAAATCCAGGCCATGAATCGGATTGTGCTCTCTCTCTTCTGTCATCTTTGCAGACACGGTCATCAGGGGTTGGTTTAAGCCAACCCGACCAGGACTCTAATCTAATATCCTTCATGCAGCCATTAGATGTGAGCTTAGGACATCACAACAGCTTGGACCCACTTAATTCAGTTCTGAATGGCAGTGTGAGCAATGCAGATATCAGTTGCTCGGGAATGTTTCAGAGTGCTTCTGATGATGGAGGGAGAGAAGCTCCTCCACCACCATCCCTTCCTTTTCACTGGCAGTAA

Protein sequence

MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYAVNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQVSPFIPFSTSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREAPPPPSLPFHWQ

Homology

[Close]

BLAST of Carg24543 vs. NCBI nr
Match: XP_022933257.1 (squamosa promoter-binding-like protein 13A [Cucurbita moschata] >XP_022933259.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata] >XP_022933260.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata] >XP_022933261.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata] >XP_022933262.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata])

HSP 1 Score: 745.0 bits (1922), Expect = 1.3e-211
Identity = 361/369 (97.83%), Postives = 362/369 (98.10%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLKAPYWDFTQLEHDASKNINTIGAS+NFVEHRTTTSRDFSVDLKLGQVSHLGTKY 
Sbjct: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASSNFVEHRTTTSRDFSVDLKLGQVSHLGTKYT 60

Query: 61  VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120
           VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV
Sbjct: 61  VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120

Query: 121 TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQVSPFIPFS 180
           TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQ SPFIPFS
Sbjct: 121 TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQGSPFIPFS 180

Query: 181 TSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLGSSSNDSIHKIPKQV 240
           TSYVYPSST VANHSWCGISNTK DASLHTQQHSTHFPD HHMYLGSSSNDSIHKIPKQV
Sbjct: 181 TSYVYPSSTAVANHSWCGISNTKTDASLHTQQHSTHFPDKHHMYLGSSSNDSIHKIPKQV 240

Query: 241 TFLQSDNLETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS 300
           TFLQSDN ETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS
Sbjct: 241 TFLQSDNPETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS 300

Query: 301 QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREAPP 360
           QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCS MFQSASDDGGREAPP
Sbjct: 301 QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSRMFQSASDDGGREAPP 360

Query: 361 PPSLPFHWQ 370
           PPSLPFHWQ
Sbjct: 361 PPSLPFHWQ 369

[Close]

BLAST of Carg24543 vs. NCBI nr
Match: XP_022973289.1 (squamosa promoter-binding-like protein 13A [Cucurbita maxima] >XP_022973299.1 squamosa promoter-binding-like protein 13A [Cucurbita maxima] >XP_022973307.1 squamosa promoter-binding-like protein 13A [Cucurbita maxima] >XP_022973314.1 squamosa promoter-binding-like protein 13A [Cucurbita maxima] >XP_022973319.1 squamosa promoter-binding-like protein 13A [Cucurbita maxima])

HSP 1 Score: 730.7 bits (1885), Expect = 2.4e-207
Identity = 357/370 (96.49%), Postives = 361/370 (97.57%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLKAPYWDFTQLEHDASKNINTIGAS+NFVEHRTTTSRDFSVDLKLGQVSHLGTKYA
Sbjct: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASSNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60

Query: 61  VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120
           VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV
Sbjct: 61  VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120

Query: 121 TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQVSPFIPFS 180
           TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPE+LSHYQ SPFIPFS
Sbjct: 121 TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEALSHYQGSPFIPFS 180

Query: 181 TSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLGSSSNDS-IHKIPKQ 240
           TSYVYPSSTTVANHSWCGISNT  DASLHTQQHSTHFPD HHMYLGSSSNDS IHKIPKQ
Sbjct: 181 TSYVYPSSTTVANHSWCGISNTNTDASLHTQQHSTHFPDKHHMYLGSSSNDSIIHKIPKQ 240

Query: 241 VTFLQSDNLETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGL 300
           VTFLQSDN E+LVCQPLDFSEN GGRGKL FDRFSNPGHESDCALSLLSSLQTRSSGVGL
Sbjct: 241 VTFLQSDNPESLVCQPLDFSENVGGRGKLFFDRFSNPGHESDCALSLLSSLQTRSSGVGL 300

Query: 301 SQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREAP 360
           SQPDQDSNL+SFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREA 
Sbjct: 301 SQPDQDSNLMSFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREA- 360

Query: 361 PPPSLPFHWQ 370
           PPPSLPFHWQ
Sbjct: 361 PPPSLPFHWQ 369

[Close]

BLAST of Carg24543 vs. NCBI nr
Match: XP_023529408.1 (squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529409.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529410.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529411.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529412.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529413.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529414.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_023529415.1 squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 729.6 bits (1882), Expect = 5.4e-207
Identity = 355/369 (96.21%), Postives = 359/369 (97.29%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLKAPYWDFTQLEHDASKNI+TIGAS+NFVEHRTTTSRDFSVDLKLGQVSHLGTKY 
Sbjct: 1   MDWNLKAPYWDFTQLEHDASKNISTIGASSNFVEHRTTTSRDFSVDLKLGQVSHLGTKYV 60

Query: 61  VNKLKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120
            NKLKMAPSPSEPSKRARGCG GAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV
Sbjct: 61  ANKLKMAPSPSEPSKRARGCGTGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQV 120

Query: 121 TIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQVSPFIPFS 180
           TIGG+KQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQ SPFIPFS
Sbjct: 121 TIGGIKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQGSPFIPFS 180

Query: 181 TSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLGSSSNDSIHKIPKQV 240
            SYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPD HHMYLGSSSNDSIHKIPKQV
Sbjct: 181 NSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDKHHMYLGSSSNDSIHKIPKQV 240

Query: 241 TFLQSDNLETLVCQPLDFSENAGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS 300
           TFLQSDN E+LVCQPLDFSEN GGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS
Sbjct: 241 TFLQSDNPESLVCQPLDFSENVGGRGKLLFDRFSNPGHESDCALSLLSSLQTRSSGVGLS 300

Query: 301 QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREAPP 360
           QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREA P
Sbjct: 301 QPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREA-P 360

Query: 361 PPSLPFHWQ 370
           PPSLPF WQ
Sbjct: 361 PPSLPFQWQ 368

[Close]

BLAST of Carg24543 vs. NCBI nr
Match: XP_004138255.1 (PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis sativus] >KGN63473.1 hypothetical protein Csa_1G001450 [Cucumis sativus])

HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-160
Identity = 294/382 (76.96%), Postives = 325/382 (85.08%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLK P WDFTQLE DA KNIN+IGAS+NFVEH   TS DF+VDLKLGQVS+LGTKY 
Sbjct: 1   MDWNLKTPSWDFTQLEQDALKNINSIGASSNFVEH-IATSGDFTVDLKLGQVSNLGTKYV 60

Query: 61  VNK---LKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120
           VN+    KMAPSPSEPSKRARG GNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT
Sbjct: 61  VNEPGVFKMAPSPSEPSKRARGSGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120

Query: 121 PQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES-----LSHYQ 180
           PQVTIGGLKQRFCQQCSRFHSL+EFDEGKRSCRKRLDGHNRRRRKPQ +S     LSHYQ
Sbjct: 121 PQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSRSILSHYQ 180

Query: 181 VSPFIPFSTSYVYPSSTTVANHSWCGI-SNTKADASLHTQQHSTHFPDNHHMYLGSSSND 240
            S  +PFS+S+VYP ST V NHSW  + +NT+ DA LH QQ  THFPD H++YLGSSSND
Sbjct: 181 GSQLLPFSSSHVYP-STLVMNHSWRDLANNTEIDARLHVQQEPTHFPDKHNIYLGSSSND 240

Query: 241 SIHKIPKQVTFLQSDNLETLVCQPL----DFSENAGGRGKLLFDRFSNPGHESDCALSLL 300
           S+HKI KQVTF+QSDN E+ V QPL    DFSEN  GR K+L+D F  PGHESDCALSLL
Sbjct: 241 SVHKIGKQVTFMQSDNPESSVGQPLVKTIDFSENEIGRSKMLYDGFKTPGHESDCALSLL 300

Query: 301 SSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMF 360
           SSLQT++SG+G S+ +QD +LISF+QPLDVSLGHHNSL+P+NSVLNGSVSNADI+CSGMF
Sbjct: 301 SSLQTQASGIGFSEAEQDRHLISFLQPLDVSLGHHNSLEPINSVLNGSVSNADINCSGMF 360

Query: 361 QSASDDGGREAPPPPSLPFHWQ 370
             AS+DG  EA PPPSLPFHWQ
Sbjct: 361 HIASNDGCNEA-PPPSLPFHWQ 379

[Close]

BLAST of Carg24543 vs. NCBI nr
Match: XP_008464414.1 (PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo] >XP_008464415.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo] >XP_008464416.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo] >XP_008464417.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo])

HSP 1 Score: 563.9 bits (1452), Expect = 4.0e-157
Identity = 290/382 (75.92%), Postives = 321/382 (84.03%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLK P WDFTQLE DA KNINTIGAS+NFVEH  TTS DF+VDLKLGQVS+LGTKY 
Sbjct: 1   MDWNLKTPSWDFTQLEQDALKNINTIGASSNFVEH-ITTSGDFTVDLKLGQVSNLGTKYV 60

Query: 61  VNK---LKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120
           VN+    K+ PSPSEPSKRARG GNGAQP SCLVDGCVSDLSNYRDYHRRHKVCELHSKT
Sbjct: 61  VNEPGVFKVTPSPSEPSKRARGSGNGAQPSSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120

Query: 121 PQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES-----LSHYQ 180
           PQVTIGGL QRFCQQCSRFHSL+EFDEGKRSCRKRLDGHNRRRRKPQ +S     LSHYQ
Sbjct: 121 PQVTIGGLTQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSRSILSHYQ 180

Query: 181 VSPFIPFSTSYVYPSSTTVANHSWCGI-SNTKADASLHTQQHSTHFPDNHHMYLGSSSND 240
            S   PFS+S+VYP ST V NHSW  + +NT+ DA LH QQ  THFPD H++YLGSSSND
Sbjct: 181 GSQLSPFSSSHVYP-STLVMNHSWRDLANNTEIDARLHVQQEPTHFPDKHNIYLGSSSND 240

Query: 241 SIHKIPKQVTFLQSDNLETLVCQPL----DFSENAGGRGKLLFDRFSNPGHESDCALSLL 300
           S+HKI KQVTF+QSDN E+ V QPL    DFSEN   R K+L+DRF  PGHESDCALSLL
Sbjct: 241 SVHKIGKQVTFMQSDNPESSVGQPLVKTIDFSENEVCRSKMLYDRFKTPGHESDCALSLL 300

Query: 301 SSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMF 360
           SSLQT++SG+G S+ +QD +LISF+QPLDVSLGHHNSL+P+NSVLNGSVSNA+I+CSGMF
Sbjct: 301 SSLQTQASGIGFSEAEQDRHLISFLQPLDVSLGHHNSLEPINSVLNGSVSNANINCSGMF 360

Query: 361 QSASDDGGREAPPPPSLPFHWQ 370
             AS+DG  EA  PPSLPFHWQ
Sbjct: 361 HIASNDGCNEA-TPPSLPFHWQ 379

[Close]

BLAST of Carg24543 vs. TAIR10
Match: AT5G50570.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein)

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-50
Identity = 167/409 (40.83%), Postives = 204/409 (49.88%), Query Frame = 0


Query: 1   MDWNLK--APYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLG-------- 60
           MDWN K  + Y      E D S    +I    +     + +  DFS DLKLG        
Sbjct: 1   MDWNFKLSSGYLSGFDQEPDLSPMDGSISFGGS-----SQSKADFSFDLKLGRNIGNSSS 60

Query: 61  ------QVSHLGTKYAVNKLKMAPSPSEPSKRARGCGNGAQPLS-CLVDGCVSDLSNYRD 120
                 QV  L         K   S S  SKR RG G G   +  CLVDGC SD SN R+
Sbjct: 61  VFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCRE 120

Query: 121 YHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKP 180
           YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKP
Sbjct: 121 YHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKP 180

Query: 181 QPESLSH-------YQVSPFIPFS-TSYVYPSSTTVANHSWCGIS----NTKADASLHTQ 240
           QPE +         +Q S  + FS  S+V+P +T+V N SW G S       A+ S + Q
Sbjct: 181 QPEHIGRPANFFTGFQGSKLLEFSGGSHVFP-TTSVLNPSW-GNSLVSVAVAANGSSYGQ 240

Query: 241 QHS----THFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGK 300
             S    +       M+  SSS +S   I KQ  FLQ               E    R  
Sbjct: 241 SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ---------------EEESSRTA 300

Query: 301 LLFDRFSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDP 360
            L +R ++  H+SDCALSLLSS  + SS   L QP           PL +      S + 
Sbjct: 301 SLCERMTSCIHDSDCALSLLSS--SSSSVPHLLQP-----------PLSL------SQEA 359

Query: 361 LNSVLNGSVSNADISCSGMFQSAS--DDG----GREAPP-PPSLPFHWQ 370
           + +V  G         SG+F++AS   DG    G EA   P + PFHW+
Sbjct: 361 VETVFYG---------SGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359

[Close]

BLAST of Carg24543 vs. TAIR10
Match: AT5G50670.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein)

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-50
Identity = 167/409 (40.83%), Postives = 204/409 (49.88%), Query Frame = 0


Query: 1   MDWNLK--APYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLG-------- 60
           MDWN K  + Y      E D S    +I    +     + +  DFS DLKLG        
Sbjct: 1   MDWNFKLSSGYLSGFDQEPDLSPMDGSISFGGS-----SQSKADFSFDLKLGRNIGNSSS 60

Query: 61  ------QVSHLGTKYAVNKLKMAPSPSEPSKRARGCGNGAQPLS-CLVDGCVSDLSNYRD 120
                 QV  L         K   S S  SKR RG G G   +  CLVDGC SD SN R+
Sbjct: 61  VFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCRE 120

Query: 121 YHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKP 180
           YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKP
Sbjct: 121 YHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKP 180

Query: 181 QPESLSH-------YQVSPFIPFS-TSYVYPSSTTVANHSWCGIS----NTKADASLHTQ 240
           QPE +         +Q S  + FS  S+V+P +T+V N SW G S       A+ S + Q
Sbjct: 181 QPEHIGRPANFFTGFQGSKLLEFSGGSHVFP-TTSVLNPSW-GNSLVSVAVAANGSSYGQ 240

Query: 241 QHS----THFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGK 300
             S    +       M+  SSS +S   I KQ  FLQ               E    R  
Sbjct: 241 SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ---------------EEESSRTA 300

Query: 301 LLFDRFSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDP 360
            L +R ++  H+SDCALSLLSS  + SS   L QP           PL +      S + 
Sbjct: 301 SLCERMTSCIHDSDCALSLLSS--SSSSVPHLLQP-----------PLSL------SQEA 359

Query: 361 LNSVLNGSVSNADISCSGMFQSAS--DDG----GREAPP-PPSLPFHWQ 370
           + +V  G         SG+F++AS   DG    G EA   P + PFHW+
Sbjct: 361 VETVFYG---------SGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359

[Close]

BLAST of Carg24543 vs. TAIR10
Match: AT1G27370.1 (squamosa promoter binding protein-like 10)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 18  DASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYAVNKLKMAP------SPS 77
           D+S NI+ +    +        S +  + LKLG+ ++    +  N   ++       +PS
Sbjct: 98  DSSSNIDFLQVKPSTALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPS 157

Query: 78  EPS-KRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFC 137
             + K+ + CG   Q   C +DGC  DLS+ +DYHR+H+VCE HSK P+V + GL++RFC
Sbjct: 158 VVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFC 217

Query: 138 QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQ 165
           QQCSRFH++ EFDE KRSCRKRL  HN RRRKPQ
Sbjct: 218 QQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 251

[Close]

BLAST of Carg24543 vs. TAIR10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 75  KRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCS 134
           K   G G  ++ + C VD C +DLS  +DYHRRHKVCE+HSK     +GG+ QRFCQQCS
Sbjct: 113 KTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCS 172

Query: 135 RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSH 171
           RFH LEEFDEGKRSCR+RL GHN+RRRK  P+++ +
Sbjct: 173 RFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGN 208

[Close]

BLAST of Carg24543 vs. TAIR10
Match: AT1G76580.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-29
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 89  CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRS 148
           C VD C  DLS  +DYHRRHKVCE+HSK  +  +G   QRFCQQCSRFH L EFDEGKRS
Sbjct: 82  CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query: 149 CRKRLDGHNRRRRKPQPESLSHYQVS 175
           CR+RLDGHNRRRRK QP++++   V+
Sbjct: 142 CRRRLDGHNRRRRKTQPDAITSQVVA 167

[Close]

BLAST of Carg24543 vs. Swiss-Prot
Match: sp|B9DI20|SP13A_ARATH (Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SPL13A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-49
Identity = 167/409 (40.83%), Postives = 204/409 (49.88%), Query Frame = 0


Query: 1   MDWNLK--APYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLG-------- 60
           MDWN K  + Y      E D S    +I    +     + +  DFS DLKLG        
Sbjct: 1   MDWNFKLSSGYLSGFDQEPDLSPMDGSISFGGS-----SQSKADFSFDLKLGRNIGNSSS 60

Query: 61  ------QVSHLGTKYAVNKLKMAPSPSEPSKRARGCGNGAQPLS-CLVDGCVSDLSNYRD 120
                 QV  L         K   S S  SKR RG G G   +  CLVDGC SD SN R+
Sbjct: 61  VFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCRE 120

Query: 121 YHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKP 180
           YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKP
Sbjct: 121 YHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKP 180

Query: 181 QPESLSH-------YQVSPFIPFS-TSYVYPSSTTVANHSWCGIS----NTKADASLHTQ 240
           QPE +         +Q S  + FS  S+V+P +T+V N SW G S       A+ S + Q
Sbjct: 181 QPEHIGRPANFFTGFQGSKLLEFSGGSHVFP-TTSVLNPSW-GNSLVSVAVAANGSSYGQ 240

Query: 241 QHS----THFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGK 300
             S    +       M+  SSS +S   I KQ  FLQ               E    R  
Sbjct: 241 SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ---------------EEESSRTA 300

Query: 301 LLFDRFSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDP 360
            L +R ++  H+SDCALSLLSS  + SS   L QP           PL +      S + 
Sbjct: 301 SLCERMTSCIHDSDCALSLLSS--SSSSVPHLLQP-----------PLSL------SQEA 359

Query: 361 LNSVLNGSVSNADISCSGMFQSAS--DDG----GREAPP-PPSLPFHWQ 370
           + +V  G         SG+F++AS   DG    G EA   P + PFHW+
Sbjct: 361 VETVFYG---------SGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359

[Close]

BLAST of Carg24543 vs. Swiss-Prot
Match: sp|P0DI11|SP13B_ARATH (Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana OX=3702 GN=SPL13B PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-49
Identity = 167/409 (40.83%), Postives = 204/409 (49.88%), Query Frame = 0


Query: 1   MDWNLK--APYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLG-------- 60
           MDWN K  + Y      E D S    +I    +     + +  DFS DLKLG        
Sbjct: 1   MDWNFKLSSGYLSGFDQEPDLSPMDGSISFGGS-----SQSKADFSFDLKLGRNIGNSSS 60

Query: 61  ------QVSHLGTKYAVNKLKMAPSPSEPSKRARGCGNGAQPLS-CLVDGCVSDLSNYRD 120
                 QV  L         K   S S  SKR RG G G   +  CLVDGC SD SN R+
Sbjct: 61  VFGDTEQVISLSKWKDSALAKPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCRE 120

Query: 121 YHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKP 180
           YH+RHKVC++HSKTP VTI G KQRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKP
Sbjct: 121 YHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKP 180

Query: 181 QPESLSH-------YQVSPFIPFS-TSYVYPSSTTVANHSWCGIS----NTKADASLHTQ 240
           QPE +         +Q S  + FS  S+V+P +T+V N SW G S       A+ S + Q
Sbjct: 181 QPEHIGRPANFFTGFQGSKLLEFSGGSHVFP-TTSVLNPSW-GNSLVSVAVAANGSSYGQ 240

Query: 241 QHS----THFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGK 300
             S    +       M+  SSS +S   I KQ  FLQ               E    R  
Sbjct: 241 SQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPFLQ---------------EEESSRTA 300

Query: 301 LLFDRFSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDP 360
            L +R ++  H+SDCALSLLSS  + SS   L QP           PL +      S + 
Sbjct: 301 SLCERMTSCIHDSDCALSLLSS--SSSSVPHLLQP-----------PLSL------SQEA 359

Query: 361 LNSVLNGSVSNADISCSGMFQSAS--DDG----GREAPP-PPSLPFHWQ 370
           + +V  G         SG+F++AS   DG    G EA   P + PFHW+
Sbjct: 361 VETVFYG---------SGLFENASAVSDGSVISGNEAVRLPQTFPFHWE 359

[Close]

BLAST of Carg24543 vs. Swiss-Prot
Match: sp|Q0J0K1|SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL18 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.0e-36
Identity = 88/195 (45.13%), Postives = 104/195 (53.33%), Query Frame = 0


Query: 1   MDWNLKAPY-WDFTQLEHDASKNINTIGASNNFVEHRTTTSR------DFSVDLKLGQVS 60
           MDW+LK P  WD  +LEH+A  N+    ++          SR      + SVDLKLG + 
Sbjct: 1   MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLG 60

Query: 61  HLGTKYAVNK-------------------LKMAPSPSEPSKRARGCGNGAQPLSCLVDGC 120
             G   A+ +                                        Q  SC VDGC
Sbjct: 61  EFGAADALKEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPSCAVDGC 120

Query: 121 VSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLD 170
            +DLS +RDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L EFDE KRSCRKRLD
Sbjct: 121 KADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLD 180

[Close]

BLAST of Carg24543 vs. Swiss-Prot
Match: sp|Q2R3Y1|SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL19 PE=3 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-34
Identity = 96/231 (41.56%), Postives = 120/231 (51.95%), Query Frame = 0


Query: 88  SCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKR 147
           +C VDGC SDLS  RDYHRRHKVCE H+KTP V + G +QRFCQQCSRFH+L EFD+GK+
Sbjct: 92  ACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKK 151

Query: 148 SCRKRLDGHNRRRRKPQPESLSHYQVSPFIPFSTSYVYPSSTTVANHSWCGISNTKADAS 207
           SCRKRLDGHNRRRRKPQ ++L+     P+   +   VYP +  +A+ +        ADA 
Sbjct: 152 SCRKRLDGHNRRRRKPQHDALNPRSFLPYHQANQFSVYPQTFPIADQN--------ADAL 211

Query: 208 LHTQQHSTHFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLETLVCQPLDFSENAGGRGK 267
           +          D H  +  S S     + PKQ  F+Q            D     G    
Sbjct: 212 MRPL-------DRHPPF--SISFSGTFREPKQFPFMQ------------DGGSGLGAARH 271

Query: 268 LLFDRFSNP------------------GHESDCALSLLSSLQTRSSGVGLS 301
            L   FS+P                  G + +CALSLLSS    S   G+S
Sbjct: 272 DLLRPFSSPEDGANITTTRSACNGVPHGLDPECALSLLSSSLHPSPAAGIS 293

[Close]

BLAST of Carg24543 vs. Swiss-Prot
Match: sp|Q49I57|TGA1B_MAIZE (Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-33
Identity = 102/242 (42.15%), Postives = 132/242 (54.55%), Query Frame = 0


Query: 88  SCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKR 147
           SC VDGC +DL   RDYHRRHKVCE HSKTP V + G + RFCQQCSRFH L EFD  KR
Sbjct: 104 SCAVDGCRADLGKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDADKR 163

Query: 148 SCRKRLDGHNRRRRKPQPES------LSHYQVSPFIPFSTSYVYPSSTTVANHSW-CGIS 207
           SCRKRLDGHNRRRRKPQP++      ++  Q + F PF+    +P        SW  G+ 
Sbjct: 164 SCRKRLDGHNRRRRKPQPDTMASASFIASQQGTRFSPFA----HPR----LEASWPPGVM 223

Query: 208 NTKADASLHTQQ----HSTHFPDNHHMYLGSSSNDSIHKIPKQVTFLQSDNLE------- 267
            T+      T Q     S+     H + LG+++  +  K  ++  FLQ   +        
Sbjct: 224 KTEESPYHITHQIPLGSSSSSRQQHFVALGAAT-PAYAKEGRRFPFLQEGEISFATGVVL 283

Query: 268 -----TLVCQPL----DFSENAGGRGKLLF-DRFSNPGHESDCALSLLSSLQTRSSGVGL 302
                   CQPL      SE++G  G  +F D+      +SDCALSLLS+    SSG+ +
Sbjct: 284 EPPAAAPACQPLLRTGAPSESSGAGGSKMFSDQGLARVLDSDCALSLLSA-PANSSGIDV 335

[Close]

BLAST of Carg24543 vs. TrEMBL
Match: tr|A0A0A0LNV8|A0A0A0LNV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001450 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.1e-160
Identity = 294/382 (76.96%), Postives = 325/382 (85.08%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLK P WDFTQLE DA KNIN+IGAS+NFVEH   TS DF+VDLKLGQVS+LGTKY 
Sbjct: 1   MDWNLKTPSWDFTQLEQDALKNINSIGASSNFVEH-IATSGDFTVDLKLGQVSNLGTKYV 60

Query: 61  VNK---LKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120
           VN+    KMAPSPSEPSKRARG GNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT
Sbjct: 61  VNEPGVFKMAPSPSEPSKRARGSGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120

Query: 121 PQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES-----LSHYQ 180
           PQVTIGGLKQRFCQQCSRFHSL+EFDEGKRSCRKRLDGHNRRRRKPQ +S     LSHYQ
Sbjct: 121 PQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSRSILSHYQ 180

Query: 181 VSPFIPFSTSYVYPSSTTVANHSWCGI-SNTKADASLHTQQHSTHFPDNHHMYLGSSSND 240
            S  +PFS+S+VYP ST V NHSW  + +NT+ DA LH QQ  THFPD H++YLGSSSND
Sbjct: 181 GSQLLPFSSSHVYP-STLVMNHSWRDLANNTEIDARLHVQQEPTHFPDKHNIYLGSSSND 240

Query: 241 SIHKIPKQVTFLQSDNLETLVCQPL----DFSENAGGRGKLLFDRFSNPGHESDCALSLL 300
           S+HKI KQVTF+QSDN E+ V QPL    DFSEN  GR K+L+D F  PGHESDCALSLL
Sbjct: 241 SVHKIGKQVTFMQSDNPESSVGQPLVKTIDFSENEIGRSKMLYDGFKTPGHESDCALSLL 300

Query: 301 SSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMF 360
           SSLQT++SG+G S+ +QD +LISF+QPLDVSLGHHNSL+P+NSVLNGSVSNADI+CSGMF
Sbjct: 301 SSLQTQASGIGFSEAEQDRHLISFLQPLDVSLGHHNSLEPINSVLNGSVSNADINCSGMF 360

Query: 361 QSASDDGGREAPPPPSLPFHWQ 370
             AS+DG  EA PPPSLPFHWQ
Sbjct: 361 HIASNDGCNEA-PPPSLPFHWQ 379

[Close]

BLAST of Carg24543 vs. TrEMBL
Match: tr|A0A1S3CLF0|A0A1S3CLF0_CUCME (squamosa promoter-binding-like protein 13A OS=Cucumis melo OX=3656 GN=LOC103502309 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 2.6e-157
Identity = 290/382 (75.92%), Postives = 321/382 (84.03%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLK P WDFTQLE DA KNINTIGAS+NFVEH  TTS DF+VDLKLGQVS+LGTKY 
Sbjct: 1   MDWNLKTPSWDFTQLEQDALKNINTIGASSNFVEH-ITTSGDFTVDLKLGQVSNLGTKYV 60

Query: 61  VNK---LKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120
           VN+    K+ PSPSEPSKRARG GNGAQP SCLVDGCVSDLSNYRDYHRRHKVCELHSKT
Sbjct: 61  VNEPGVFKVTPSPSEPSKRARGSGNGAQPSSCLVDGCVSDLSNYRDYHRRHKVCELHSKT 120

Query: 121 PQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES-----LSHYQ 180
           PQVTIGGL QRFCQQCSRFHSL+EFDEGKRSCRKRLDGHNRRRRKPQ +S     LSHYQ
Sbjct: 121 PQVTIGGLTQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSRSILSHYQ 180

Query: 181 VSPFIPFSTSYVYPSSTTVANHSWCGI-SNTKADASLHTQQHSTHFPDNHHMYLGSSSND 240
            S   PFS+S+VYP ST V NHSW  + +NT+ DA LH QQ  THFPD H++YLGSSSND
Sbjct: 181 GSQLSPFSSSHVYP-STLVMNHSWRDLANNTEIDARLHVQQEPTHFPDKHNIYLGSSSND 240

Query: 241 SIHKIPKQVTFLQSDNLETLVCQPL----DFSENAGGRGKLLFDRFSNPGHESDCALSLL 300
           S+HKI KQVTF+QSDN E+ V QPL    DFSEN   R K+L+DRF  PGHESDCALSLL
Sbjct: 241 SVHKIGKQVTFMQSDNPESSVGQPLVKTIDFSENEVCRSKMLYDRFKTPGHESDCALSLL 300

Query: 301 SSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMF 360
           SSLQT++SG+G S+ +QD +LISF+QPLDVSLGHHNSL+P+NSVLNGSVSNA+I+CSGMF
Sbjct: 301 SSLQTQASGIGFSEAEQDRHLISFLQPLDVSLGHHNSLEPINSVLNGSVSNANINCSGMF 360

Query: 361 QSASDDGGREAPPPPSLPFHWQ 370
             AS+DG  EA  PPSLPFHWQ
Sbjct: 361 HIASNDGCNEA-TPPSLPFHWQ 379

[Close]

BLAST of Carg24543 vs. TrEMBL
Match: tr|A0A2N9EB57|A0A2N9EB57_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4089 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.5e-99
Identity = 216/394 (54.82%), Postives = 259/394 (65.74%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDWNLKAP WDFT+LE ++  NI T+  S++F +HRT    DFSVDLKLGQV   G + +
Sbjct: 1   MDWNLKAPSWDFTELEQESFPNIETVSGSSSFGDHRTKRG-DFSVDLKLGQVGSSGNE-S 60

Query: 61  VNK------LKMAPSPSEPSKRARGCGNGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELH 120
           VNK       KMA SPS   KR R   NG QP+SCLVDGC SDLSN RDYHRRHKVCELH
Sbjct: 61  VNKWKEPGASKMASSPSGSLKRTRAANNGTQPVSCLVDGCTSDLSNCRDYHRRHKVCELH 120

Query: 121 SKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES------- 180
           SKTP+VTI G KQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPE        
Sbjct: 121 SKTPEVTICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRSGNF 180

Query: 181 LSHYQVSPFIPFSTSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLGS 240
           LS+YQ   FIPFS  +VYP STT+ + +W G+ NT ADA L  QQ      D   ++LGS
Sbjct: 181 LSNYQGPQFIPFSGPHVYP-STTMVSPAWAGVLNTAADARLPNQQQQLQLLDKQKLFLGS 240

Query: 241 SSNDSIHKIPKQVTFLQS-----DNLETL----VCQPL----DFSENAGGRGKLLFDRFS 300
           S + S +   KQ++FLQ      +N  +L    VCQPL      SE+ G R K+  DR +
Sbjct: 241 SPSTSSYIGGKQLSFLQGGSTTLNNQLSLEAPPVCQPLLRTIALSESGGARSKMYCDRLT 300

Query: 301 NPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVLNG 360
              H+SDCALSLLSS Q+++SG+ LS      N  S +QPL  SL H +SL+P++SVL  
Sbjct: 301 ARVHDSDCALSLLSSPQSQTSGLDLSHV-MHPNPASLVQPLGPSL-HGDSLEPMDSVLVS 360

Query: 361 SVSNADISCSGMFQSASDDGGREAPPPPSLPFHW 369
           + +  ++ C GMF   SD        P +LPFHW
Sbjct: 361 NGNGNNVHCQGMFLMGSDGSQAANETPQTLPFHW 389

[Close]

BLAST of Carg24543 vs. TrEMBL
Match: tr|A0A2I4FBN2|A0A2I4FBN2_9ROSI (squamosa promoter-binding-like protein 13A isoform X3 OS=Juglans regia OX=51240 GN=LOC108997158 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.9e-97
Identity = 214/397 (53.90%), Postives = 262/397 (65.99%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDW+LKAP WDFT+LE +A  N  T+G S++F   RT    DFSVDLKLGQ+ +      
Sbjct: 1   MDWHLKAPSWDFTELEQEAFPNTETVGGSSSFGYQRTNEG-DFSVDLKLGQLGN-SAHDP 60

Query: 61  VNK------LKMAPSPSEPSKRARGCGNGA-QPLSCLVDGCVSDLSNYRDYHRRHKVCEL 120
           VNK       KM+ SPS  SKRAR   NG+  P+SCLVDGC SDLSN RDY+RRHKVCEL
Sbjct: 61  VNKWKEPGVSKMSSSPSGSSKRARATNNGSNHPVSCLVDGCTSDLSNCRDYNRRHKVCEL 120

Query: 121 HSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES------ 180
           HSKTPQV I G KQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPE       
Sbjct: 121 HSKTPQVIICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRSGN 180

Query: 181 -LSHYQVSPFIPFSTSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLG 240
            LS+YQ +  +PFS+S+VYP +TT+ + +W G+ NT ADA LH QQ      D   ++LG
Sbjct: 181 FLSNYQGTQLMPFSSSHVYP-ATTMVSPAWAGVLNTAADARLHNQQQQLQLLDKEKLFLG 240

Query: 241 SSSNDSI--HKIPKQVTFLQ--------SDNLETLVCQPL----DFSENAGGRGKLLFDR 300
           SS + S   +   KQ++FLQ          +LE  VCQPL      SEN G R K+  DR
Sbjct: 241 SSPSTSSTNYMGGKQLSFLQGGSTILNNQSSLEAPVCQPLLRNIALSENGGTRSKMYGDR 300

Query: 301 FSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVL 360
            +   H+SDCALSLLSS Q++SSG+ LS      N +S +QPLD SL H N+L+P+ +VL
Sbjct: 301 LTTGVHDSDCALSLLSSPQSQSSGLALSHM-VHPNSVSLVQPLDSSL-HGNNLEPMEAVL 360

Query: 361 NGSVSNADISCSGMFQSASDDGGREAPPPPSLPFHWQ 370
             S S+++I C GMF  AS++       P + PF W+
Sbjct: 361 ISSGSDSNIHCQGMFHMASEESPAN-ETPQTFPFRWE 391

[Close]

BLAST of Carg24543 vs. TrEMBL
Match: tr|A0A2I4FB65|A0A2I4FB65_9ROSI (squamosa promoter-binding-like protein 13A isoform X1 OS=Juglans regia OX=51240 GN=LOC108997158 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.9e-97
Identity = 214/397 (53.90%), Postives = 262/397 (65.99%), Query Frame = 0


Query: 1   MDWNLKAPYWDFTQLEHDASKNINTIGASNNFVEHRTTTSRDFSVDLKLGQVSHLGTKYA 60
           MDW+LKAP WDFT+LE +A  N  T+G S++F   RT    DFSVDLKLGQ+ +      
Sbjct: 46  MDWHLKAPSWDFTELEQEAFPNTETVGGSSSFGYQRTNEG-DFSVDLKLGQLGN-SAHDP 105

Query: 61  VNK------LKMAPSPSEPSKRARGCGNGA-QPLSCLVDGCVSDLSNYRDYHRRHKVCEL 120
           VNK       KM+ SPS  SKRAR   NG+  P+SCLVDGC SDLSN RDY+RRHKVCEL
Sbjct: 106 VNKWKEPGVSKMSSSPSGSSKRARATNNGSNHPVSCLVDGCTSDLSNCRDYNRRHKVCEL 165

Query: 121 HSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPES------ 180
           HSKTPQV I G KQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPE       
Sbjct: 166 HSKTPQVIICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRSGN 225

Query: 181 -LSHYQVSPFIPFSTSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDNHHMYLG 240
            LS+YQ +  +PFS+S+VYP +TT+ + +W G+ NT ADA LH QQ      D   ++LG
Sbjct: 226 FLSNYQGTQLMPFSSSHVYP-ATTMVSPAWAGVLNTAADARLHNQQQQLQLLDKEKLFLG 285

Query: 241 SSSNDSI--HKIPKQVTFLQ--------SDNLETLVCQPL----DFSENAGGRGKLLFDR 300
           SS + S   +   KQ++FLQ          +LE  VCQPL      SEN G R K+  DR
Sbjct: 286 SSPSTSSTNYMGGKQLSFLQGGSTILNNQSSLEAPVCQPLLRNIALSENGGTRSKMYGDR 345

Query: 301 FSNPGHESDCALSLLSSLQTRSSGVGLSQPDQDSNLISFMQPLDVSLGHHNSLDPLNSVL 360
            +   H+SDCALSLLSS Q++SSG+ LS      N +S +QPLD SL H N+L+P+ +VL
Sbjct: 346 LTTGVHDSDCALSLLSSPQSQSSGLALSHM-VHPNSVSLVQPLDSSL-HGNNLEPMEAVL 405

Query: 361 NGSVSNADISCSGMFQSASDDGGREAPPPPSLPFHWQ 370
             S S+++I C GMF  AS++       P + PF W+
Sbjct: 406 ISSGSDSNIHCQGMFHMASEESPAN-ETPQTFPFRWE 436

The following BLAST results are available for this feature:

BLAST of Carg24543 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933257.1	1.3e-211	97.83	squamosa promoter-binding-like protein 13A [Cucurbita moschata] >XP_022933259.1 ...	[more]
XP_022973289.1	2.4e-207	96.49	squamosa promoter-binding-like protein 13A [Cucurbita maxima] >XP_022973299.1 sq...	[more]
XP_023529408.1	5.4e-207	96.21	squamosa promoter-binding-like protein 13A [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_004138255.1	1.7e-160	76.96	PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis sativus] >KGN6347...	[more]
XP_008464414.1	4.0e-157	75.92	PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo] >XP_0084644...	[more]

BLAST of Carg24543 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50570.1	5.1e-50	40.83	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT5G50670.1	5.1e-50	40.83	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT1G27370.1	1.2e-30	44.16	squamosa promoter binding protein-like 10	[more]
AT3G60030.1	1.2e-30	60.42	squamosa promoter-binding protein-like 12	[more]
AT1G76580.1	1.3e-29	66.28	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]

BLAST of Carg24543 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9DI20\|SP13A_ARATH	9.3e-49	40.83	Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana OX=3702 GN=SP...	[more]
sp\|P0DI11\|SP13B_ARATH	9.3e-49	40.83	Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana OX=3702 GN=SP...	[more]
sp\|Q0J0K1\|SPL18_ORYSJ	9.0e-36	45.13	Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q2R3Y1\|SPL19_ORYSJ	1.3e-34	41.56	Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japoni...	[more]
sp\|Q49I57\|TGA1B_MAIZE	1.4e-33	42.15	Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1	[more]

BLAST of Carg24543 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNV8\|A0A0A0LNV8_CUCSA	1.1e-160	76.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001450 PE=4 SV=1	[more]
tr\|A0A1S3CLF0\|A0A1S3CLF0_CUCME	2.6e-157	75.92	squamosa promoter-binding-like protein 13A OS=Cucumis melo OX=3656 GN=LOC1035023...	[more]
tr\|A0A2N9EB57\|A0A2N9EB57_FAGSY	2.5e-99	54.82	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4089 PE=4 SV=1	[more]
tr\|A0A2I4FBN2\|A0A2I4FBN2_9ROSI	8.9e-97	53.90	squamosa promoter-binding-like protein 13A isoform X3 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2I4FB65\|A0A2I4FB65_9ROSI	8.9e-97	53.90	squamosa promoter-binding-like protein 13A isoform X1 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036893	SBP_sf
IPR004333	SBP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24543-RA	Carg24543-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 89..162 e-value: 3.8E-31 score: 107.0
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 86..163 score: 31.761
IPR036893	SBP domain superfamily	GENE3D	G3DSA:4.10.1100.10		coord: 79..150 e-value: 5.7E-33 score: 114.7
IPR036893	SBP domain superfamily	SUPERFAMILY	SSF103612	SBT domain	coord: 87..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..369
None	No IPR available	PANTHER	PTHR31251:SF29	SUBFAMILY NOT NAMED	coord: 28..368
None	No IPR available	PANTHER	PTHR31251	FAMILY NOT NAMED	coord: 28..368

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24543	Cla019286	Watermelon (97103) v1	carwmB0606
Carg24543	Csa1G001450	Cucumber (Chinese Long) v2	carcuB0636
Carg24543	MELO3C026197	Melon (DHL92) v3.5.1	carmeB0612
Carg24543	ClCG06G018020	Watermelon (Charleston Gray)	carwcgB0591
Carg24543	CSPI01G00440	Wild cucumber (PI 183967)	carcpiB0642
Carg24543	Cucsa.157230	Cucumber (Gy14) v1	carcgyB0684
Carg24543	CmaCh11G000260	Cucurbita maxima (Rimu)	carcmaB0854
Carg24543	CmaCh10G000520	Cucurbita maxima (Rimu)	carcmaB0853
Carg24543	CmoCh11G000260	Cucurbita moschata (Rifu)	carcmoB0830
Carg24543	CmoCh10G000450	Cucurbita moschata (Rifu)	carcmoB0829
Carg24543	Lsi06G016510	Bottle gourd (USVL1VR-Ls)	carlsiB554
Carg24543	Cp4.1LG18g09200	Cucurbita pepo (Zucchini)	carcpeB0863
Carg24543	Cp4.1LG04g16380	Cucurbita pepo (Zucchini)	carcpeB0864
Carg24543	CsGy1G000450	Cucumber (Gy14) v2	carcgybB0608
Carg24543	MELO3C026196.2	Melon (DHL92) v3.6.1	carmedB0618
Carg24543	CsaV3_1G000450	Cucumber (Chinese Long) v3	carcucB0643
Carg24543	Cla97C06G127760	Watermelon (97103) v2	carwmbB0634
Carg24543	Bhi02G000508	Wax gourd	carwgoB0724

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24543	Carg10272	Silver-seed gourd	carcarB391

The following block(s) are covering this gene:

None