Carg24312 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24312
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Membrane lipoprotein, putative
Location	Cucurbita_argyrosperma_scaffold_116 : 214640 .. 215083 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTCGATCCCTCAGCTGGACGTGCATTCGTATGGTTCGTCTTTTTCTCTCTCTTCCTCTGCATTCTCAGCGGCGGAGCTTGCCTTTTGGTGTACATAATCCTACCGGAGACCGAATCCACCGCATGGCTACCAGTCGCTGGCTTGTCGTTGGTTTGTCTCCCTTGGTTCTTTTGGATCTTGACCTTCTTCTATAGAGTCATCTCGCGTGCATGTGGTTTTCGAGTCTCCCTTGCCATGGCCACGAGTGCAAATGATACGAACGACGACGACAACAATAATAATAATTCGTCTGGTGAATCCCCTCGATGCGATGCAAGGGCTCAAGCAGAGGAGGATGGCAACAATGACGATCAAAGGCGAAGCAATTTGTCGTCCAACAACTCGATAATGTCTCGTGAGAGTGAAATTCCATTTGCCATATCAATGGGGTCGTGA

mRNA sequence

ATGTCTTTGGTCGATCCCTCAGCTGGACGTGCATTCGTATGGTTCGTCTTTTTCTCTCTCTTCCTCTGCATTCTCAGCGGCGGAGCTTGCCTTTTGGTGTACATAATCCTACCGGAGACCGAATCCACCGCATGGCTACCAGTCGCTGGCTTGTCGTTGGTTTGTCTCCCTTGGTTCTTTTGGATCTTGACCTTCTTCTATAGAGTCATCTCGCGTGCATGTGGTTTTCGAGTCTCCCTTGCCATGGCCACGAGTGCAAATGATACGAACGACGACGACAACAATAATAATAATTCGTCTGGTGAATCCCCTCGATGCGATGCAAGGGCTCAAGCAGAGGAGGATGGCAACAATGACGATCAAAGGCGAAGCAATTTGTCGTCCAACAACTCGATAATGTCTCGTGAGAGTGAAATTCCATTTGCCATATCAATGGGGTCGTGA

Coding sequence (CDS)

ATGTCTTTGGTCGATCCCTCAGCTGGACGTGCATTCGTATGGTTCGTCTTTTTCTCTCTCTTCCTCTGCATTCTCAGCGGCGGAGCTTGCCTTTTGGTGTACATAATCCTACCGGAGACCGAATCCACCGCATGGCTACCAGTCGCTGGCTTGTCGTTGGTTTGTCTCCCTTGGTTCTTTTGGATCTTGACCTTCTTCTATAGAGTCATCTCGCGTGCATGTGGTTTTCGAGTCTCCCTTGCCATGGCCACGAGTGCAAATGATACGAACGACGACGACAACAATAATAATAATTCGTCTGGTGAATCCCCTCGATGCGATGCAAGGGCTCAAGCAGAGGAGGATGGCAACAATGACGATCAAAGGCGAAGCAATTTGTCGTCCAACAACTCGATAATGTCTCGTGAGAGTGAAATTCCATTTGCCATATCAATGGGGTCGTGA

Protein sequence

MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFFWILTFFYRVISRACGFRVSLAMATSANDTNDDDNNNNNSSGESPRCDARAQAEEDGNNDDQRRSNLSSNNSIMSRESEIPFAISMGS

Homology

[Close]

BLAST of Carg24312 vs. NCBI nr
Match: XP_022931986.1 (uncharacterized protein LOC111438319 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 2.6e-43
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
           MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLAMATSAN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           WILTFFYRVISRACGFRVSLAMATSAN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  WILTFFYRVISRACGFRVSLAMATSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXIMSRESEIPFAISMGS 148
           XXXXXXXXXXXXIMSRESEIPFAISMGS
Sbjct: 121 XXXXXXXXXXXXIMSRESEIPFAISMGS 148

[Close]

BLAST of Carg24312 vs. NCBI nr
Match: XP_022148967.1 (uncharacterized protein LOC111017503 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 3.3e-30
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLVDPS GRAF+W +   LF CILSGG CL++Y+ILPETE+TAWLP+ GLSLVCLPWFF
Sbjct: 1  MSLVDPSTGRAFIWIITVFLFFCILSGGGCLVMYMILPETETTAWLPMVGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSLAM 83
          WILTFFYRVISRACGFRVSL +
Sbjct: 61 WILTFFYRVISRACGFRVSLGV 82

[Close]

BLAST of Carg24312 vs. NCBI nr
Match: XP_011649431.1 (PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus] >KGN62210.1 hypothetical protein Csa_2G336080 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLV+PSAGRAF+W V   LF  ILSGG CLL+Y+ILPETE+TAWLP+ GLSLVCLPWFF
Sbjct: 1  MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSLAMATSAN 88
          W+LTFFYRV+SRACGFRVSL +    +
Sbjct: 61 WLLTFFYRVLSRACGFRVSLGIGADVS 87

[Close]

BLAST of Carg24312 vs. NCBI nr
Match: XP_022947828.1 (uncharacterized protein LOC111451588 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 4.8e-29
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLVDPS GR  +W V F LFL +LSGG CLL+YI LPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1  MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSLAMATS 86
          W LTF YR+ISRACGFRVSL +  +
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVN 85

[Close]

BLAST of Carg24312 vs. NCBI nr
Match: XP_023533092.1 (uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLVDPS GR  +W V F LF  +LSGG CLL+YI LPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1  MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSLAMATS 86
          W LTF YR+ISRACGFRVSL +  +
Sbjct: 61 WFLTFLYRIISRACGFRVSLGLVVN 85

[Close]

BLAST of Carg24312 vs. TAIR10
Match: AT4G30770.1 (Putative membrane lipoprotein)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          M + DP AG+AF+  +   LFL I  GG CL+ Y ILP      WL   G+  VCLPWFF
Sbjct: 1  MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILP--YPPVWLSYLGIVFVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRV 79
          WILTF YR++SR  GFR+
Sbjct: 61 WILTFAYRIVSRTFGFRM 76

[Close]

BLAST of Carg24312 vs. TrEMBL
Match: tr|A0A0A0LJX6|A0A0A0LJX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLV+PSAGRAF+W V   LF  ILSGG CLL+Y+ILPETE+TAWLP+ GLSLVCLPWFF
Sbjct: 1  MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSLAMATSAN 88
          W+LTFFYRV+SRACGFRVSL +    +
Sbjct: 61 WLLTFFYRVLSRACGFRVSLGIGADVS 87

[Close]

BLAST of Carg24312 vs. TrEMBL
Match: tr|A0A1S3CDW9|A0A1S3CDW9_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-28
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MSLV+PSAGRAF+W V   LF  I+SGG CLL+Y+ILPE+EST WLP+ GLSLVCLPWFF
Sbjct: 1  MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSL 81
          W+LTFFYRVISRACG+RVSL
Sbjct: 61 WLLTFFYRVISRACGYRVSL 80

[Close]

BLAST of Carg24312 vs. TrEMBL
Match: tr|A0A2P5DZI1|A0A2P5DZI1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_237240 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          M ++DP AGRAF+W + + LFL I  GG CL++Y+ILPET +T+WLP+AG++LVCLPWFF
Sbjct: 1  MPVIDPRAGRAFIWAISWFLFLTIAGGGGCLVMYMILPETTTTSWLPIAGITLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSL 81
          W+ TF YR++SR  GFR+ +
Sbjct: 61 WLSTFLYRILSRVFGFRLGI 80

[Close]

BLAST of Carg24312 vs. TrEMBL
Match: tr|A0A2P5APP4|A0A2P5APP4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_312100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 46/80 (57.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          M ++DP AGRAF+W + + LFL I  GG CL++Y+ILPET +T+WLP+ G++LVCLPWFF
Sbjct: 1  MPVIDPRAGRAFIWAISWFLFLTIAGGGGCLVMYMILPETTTTSWLPIVGITLVCLPWFF 60

Query: 61 WILTFFYRVISRACGFRVSL 81
          W+ TF YR++SR  GFR+ +
Sbjct: 61 WLSTFLYRILSRVFGFRLGI 80

[Close]

BLAST of Carg24312 vs. TrEMBL
Match: tr|A0A1J7HYK7|A0A1J7HYK7_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02440 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.2e-21
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60
          MS+ DPS+GR F+W +   LF+ I++GGACL+ Y++LPE+E  +WLP+ G+SLVCLPW F
Sbjct: 1  MSVSDPSSGRTFIWIITCLLFISIIAGGACLVAYMVLPESEIASWLPMLGVSLVCLPWAF 60

Query: 61 WILTFFYRVISRACGFRV 79
          W LTF YR  SR CGFRV
Sbjct: 61 WFLTFLYRFFSRCCGFRV 78

The following BLAST results are available for this feature:

BLAST of Carg24312 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931986.1	2.6e-43	99.32	uncharacterized protein LOC111438319 [Cucurbita moschata]	[more]
XP_022148967.1	3.3e-30	79.27	uncharacterized protein LOC111017503 [Momordica charantia]	[more]
XP_011649431.1	2.8e-29	73.56	PREDICTED: putative uncharacterized protein DDB_G0284715 [Cucumis sativus] >KGN6...	[more]
XP_022947828.1	4.8e-29	75.29	uncharacterized protein LOC111451588 [Cucurbita moschata]	[more]
XP_023533092.1	1.1e-28	74.12	uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24312 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30770.1	3.3e-16	52.56	Putative membrane lipoprotein	[more]

BLAST of Carg24312 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24312 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJX6\|A0A0A0LJX6_CUCSA	1.8e-29	73.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1	[more]
tr\|A0A1S3CDW9\|A0A1S3CDW9_CUCME	4.6e-28	77.50	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1	[more]
tr\|A0A2P5DZI1\|A0A2P5DZI1_9ROSA	1.1e-21	58.75	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_237240 PE=4 S...	[more]
tr\|A0A2P5APP4\|A0A2P5APP4_PARAD	3.2e-21	57.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_312100 PE...	[more]
tr\|A0A1J7HYK7\|A0A1J7HYK7_LUPAN	9.2e-21	60.26	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02440 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24312-RA	Carg24312-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..147
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 2..101
None	No IPR available	PANTHER	PTHR34964	FAMILY NOT NAMED	coord: 2..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24312	MELO3C023225	Melon (DHL92) v3.5.1	carmeB0713
Carg24312	CSPI02G16160	Wild cucumber (PI 183967)	carcpiB0754
Carg24312	Cucsa.228440	Cucumber (Gy14) v1	carcgyB0806
Carg24312	CmaCh20G010560	Cucurbita maxima (Rimu)	carcmaB1004
Carg24312	CmoCh20G010640	Cucurbita moschata (Rifu)	carcmoB0977
Carg24312	MELO3C023225.2	Melon (DHL92) v3.6.1	carmedB0726
Carg24312	Cla97C02G026620	Watermelon (97103) v2	carwmbB0749
Carg24312	Bhi10G001352	Wax gourd	carwgoB0846

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24312	Carg11711	Silver-seed gourd	carcarB589

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24312	Cucumber (Gy14) v2	carcgybB0715
Carg24312	Cucurbita maxima (Rimu)	carcmaB1005
Carg24312	Cucurbita moschata (Rifu)	carcmoB0978
Carg24312	Cucurbita pepo (Zucchini)	carcpeB1010
Carg24312	Cucurbita pepo (Zucchini)	carcpeB1011
Carg24312	Cucumber (Chinese Long) v2	carcuB0738
Carg24312	Cucumber (Chinese Long) v3	carcucB0756
Carg24312	Bottle gourd (USVL1VR-Ls)	carlsiB656
Carg24312	Watermelon (Charleston Gray)	carwcgB0694
Carg24312	Watermelon (97103) v1	carwmB0716