Carg24239 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24239
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein 830
Location	Cucurbita_argyrosperma_scaffold_191 : 168955 .. 169702 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTACTGAATCGAAAAAGAAGAACAAAGAATGGGGCACGAGGTTTGAGGCATATTTCGCTCTGAACTAGGTCTGTAAGGAGGAAGAAAGAAGACCGAATGGATGCTCAAGCCAAGAGGAAAGCATTGTTTCGTGCTAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCGATTCTCCTCTTGTCAGGTACATATCGATGAATATGGGAGCTTCAAGGTTCTTCACGGATTTCTCCTATCTACCTCGTTTTTCTTTGCTCCTATTTCCGATTTTGATTTGTGTTCTGCAGTGGACTATTCGGTTAATCGCAGGTGGAAGTTATCAATAGGAAATTATGCTCTCATGGAATAGTTCGCATTACTTTTGCATTTAGCTCAGTACGCGTGTAGTTTTCTTTTCCGTTAGTAGATCGGACTATGTTTCTCTCTATTTTCTTTACATAAGGGTGTCGTAGGAATGTATGGCAGTGGCACATAACTCCAGCTATAATTTAACCGATCGATAATGGGGAAGATTGTATGATTGTTAATCGTTGTGGTTTATTCATATGTTTTTCCGTATTGAAAATTATAGAGTTTTAAGATTCATCATTTAATATTTTAAAATTCACGAACAGGTACAATGAATTGGACCAACCTGTCTGTAGGGTTTGCGACATTGTATTGAAATCAGAGGCTTACTGGGATGCTCACCAGTCTTCTCGCAGACATCATGAGGTGATGCTTTACCAGATCAAATCTTATTAA

mRNA sequence

GATTTACTGAATCGAAAAAGAAGAACAAAGAATGGGGCACGAGGTTTGAGGCATATTTCGCTCTGAACTAGGTCTGTAAGGAGGAAGAAAGAAGACCGAATGGATGCTCAAGCCAAGAGGAAAGCATTGTTTCGTGCTAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCGATTCTCCTCTTGTCAGGTACAATGAATTGGACCAACCTGTCTGTAGGGTTTGCGACATTGTATTGAAATCAGAGGCTTACTGGGATGCTCACCAGTCTTCTCGCAGACATCATGAGGTGATGCTTTACCAGATCAAATCTTATTAA

Coding sequence (CDS)

ATGGATGCTCAAGCCAAGAGGAAAGCATTGTTTCGTGCTAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCGATTCTCCTCTTGTCAGGTACAATGAATTGGACCAACCTGTCTGTAGGGTTTGCGACATTGTATTGAAATCAGAGGCTTACTGGGATGCTCACCAGTCTTCTCGCAGACATCATGAGGTGATGCTTTACCAGATCAAATCTTATTAA

Protein sequence

MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVMLYQIKSY

Homology

[Close]

BLAST of Carg24239 vs. NCBI nr
Match: XP_022983328.1 (zinc finger protein 830-like [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. NCBI nr
Match: XP_023529023.1 (zinc finger protein 830-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. NCBI nr
Match: XP_004148048.1 (PREDICTED: zinc finger protein 830 [Cucumis sativus] >KGN62044.1 hypothetical protein Csa_2G292740 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNELDQPVCRVCD+VLKSEAYWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. NCBI nr
Match: XP_022934879.1 (zinc finger protein 830-like [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAH SSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHLSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. NCBI nr
Match: XP_022948879.1 (zinc finger protein 830-like [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNEL+QPVCRVCDIVLKSEAYWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELEQPVCRVCDIVLKSEAYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. TAIR10
Match: AT3G02860.2 (zinc ion binding)

HSP 1 Score: 109.4 bits (272), Expect = 9.5e-25
Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAK+KA+FR+KLNA+KK+ RIDSPLVRYNE DQPVCRVC++VLKSE+ WD HQ+SR+
Sbjct: 1  MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. Swiss-Prot
Match: sp|Q63ZM9|ZN830_XENLA (Zinc finger protein 830 OS=Xenopus laevis OX=8355 GN=znf830 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 3  AQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHH 62
          AQ + + L +AK      +KRI+SPL +YN L    C VC+ ++KSE  W AH   ++H 
Sbjct: 11 AQEELRKLMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHK 70

Query: 63 E 64
          E
Sbjct: 71 E 71

[Close]

BLAST of Carg24239 vs. Swiss-Prot
Match: sp|Q6DJ13|ZN830_XENTR (Zinc finger protein 830 OS=Xenopus tropicalis OX=8364 GN=znf830 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-06
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 4  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE 63
          Q + + L +AK      +KRI+SPL +YN L   +C VC+I +KSE  W AH   ++H E
Sbjct: 12 QEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPAHILGKQHKE 71

[Close]

BLAST of Carg24239 vs. Swiss-Prot
Match: sp|Q8R1N0|ZN830_MOUSE (Zinc finger protein 830 OS=Mus musculus OX=10090 GN=Znf830 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-04
Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 4  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE 63
          Q + + L R K       KRI+SP  +YN L Q  C +C+  +KSE  W  H   ++H E
Sbjct: 18 QEELRRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77

[Close]

BLAST of Carg24239 vs. Swiss-Prot
Match: sp|Q96NB3|ZN830_HUMAN (Zinc finger protein 830 OS=Homo sapiens OX=9606 GN=ZNF830 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 21/60 (35.00%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 4  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE 63
          Q + + L + K       KRI+SP  +YN L Q  C +C+  +KSE  W  H   ++H E
Sbjct: 18 QEELRRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77

[Close]

BLAST of Carg24239 vs. Swiss-Prot
Match: sp|Q3MHS2|ZN830_RAT (Zinc finger protein 830 OS=Rattus norvegicus OX=10116 GN=Znf830 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 21/60 (35.00%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 4  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE 63
          Q + + L + K       KRI+SP  +YN L Q  C +C+  +KSE  W  H   ++H E
Sbjct: 18 QEELRRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRE 77

[Close]

BLAST of Carg24239 vs. TrEMBL
Match: tr|A0A0A0LM08|A0A0A0LM08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292740 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNELDQPVCRVCD+VLKSEAYWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. TrEMBL
Match: tr|A0A1S3C619|A0A1S3C619_CUCME (zinc finger protein 830 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497442 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNELDQPVCRVCD+VLKSE YWDAHQSSRR
Sbjct: 1  MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEVYWDAHQSSRR 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. TrEMBL
Match: tr|A0A2I4EB68|A0A2I4EB68_9ROSI (zinc finger protein 830 OS=Juglans regia OX=51240 GN=LOC108988013 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-24
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQA++KALFRAKLNAQKK+KRIDSPLVRYNEL+QPVCRVCDIVLKSE+ WDAHQ+SR+
Sbjct: 1  MDAQARKKALFRAKLNAQKKDKRIDSPLVRYNELEQPVCRVCDIVLKSESLWDAHQASRK 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. TrEMBL
Match: tr|A0A061GFG3|A0A061GFG3_THECC (Zinc ion binding, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_027137 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-24
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MD QA+ KALFRAKLNAQKK+KRIDSPLVRYNELDQPVCR+CD+VLKSE++WDAHQ+SR+
Sbjct: 1  MDVQARNKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRICDVVLKSESHWDAHQASRK 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

[Close]

BLAST of Carg24239 vs. TrEMBL
Match: tr|A0A1R3JL16|A0A1R3JL16_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05393 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.7e-24
Identity = 54/65 (83.08%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRR 60
          MDAQA+ KALFRAKLNAQKK+KRIDSPLVRYNE DQPVCRVCD+VLKSE++WDAHQ+SR+
Sbjct: 1  MDAQARNKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRVCDVVLKSESHWDAHQASRK 60

Query: 61 HHEVM 66
          HHE +
Sbjct: 61 HHEAI 65

The following BLAST results are available for this feature:

BLAST of Carg24239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983328.1	2.9e-27	96.92	zinc finger protein 830-like [Cucurbita maxima]	[more]
XP_023529023.1	2.9e-27	96.92	zinc finger protein 830-like [Cucurbita pepo subsp. pepo]	[more]
XP_004148048.1	1.4e-26	93.85	PREDICTED: zinc finger protein 830 [Cucumis sativus] >KGN62044.1 hypothetical pr...	[more]
XP_022934879.1	1.8e-26	95.38	zinc finger protein 830-like [Cucurbita moschata]	[more]
XP_022948879.1	1.8e-26	93.85	zinc finger protein 830-like [Cucurbita moschata]	[more]

BLAST of Carg24239 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02860.2	9.5e-25	75.38	zinc ion binding	[more]

BLAST of Carg24239 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q63ZM9\|ZN830_XENLA	4.2e-06	40.98	Zinc finger protein 830 OS=Xenopus laevis OX=8355 GN=znf830 PE=2 SV=1	[more]
sp\|Q6DJ13\|ZN830_XENTR	5.5e-06	41.67	Zinc finger protein 830 OS=Xenopus tropicalis OX=8364 GN=znf830 PE=2 SV=1	[more]
sp\|Q8R1N0\|ZN830_MOUSE	1.0e-04	36.67	Zinc finger protein 830 OS=Mus musculus OX=10090 GN=Znf830 PE=1 SV=1	[more]
sp\|Q96NB3\|ZN830_HUMAN	2.3e-04	35.00	Zinc finger protein 830 OS=Homo sapiens OX=9606 GN=ZNF830 PE=1 SV=2	[more]
sp\|Q3MHS2\|ZN830_RAT	2.3e-04	35.00	Zinc finger protein 830 OS=Rattus norvegicus OX=10116 GN=Znf830 PE=1 SV=1	[more]

BLAST of Carg24239 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM08\|A0A0A0LM08_CUCSA	9.4e-27	93.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292740 PE=4 SV=1	[more]
tr\|A0A1S3C619\|A0A1S3C619_CUCME	2.7e-26	92.31	zinc finger protein 830 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497442 PE=4 ...	[more]
tr\|A0A2I4EB68\|A0A2I4EB68_9ROSI	5.7e-24	84.62	zinc finger protein 830 OS=Juglans regia OX=51240 GN=LOC108988013 PE=4 SV=1	[more]
tr\|A0A061GFG3\|A0A061GFG3_THECC	7.4e-24	81.54	Zinc ion binding, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_027137 PE...	[more]
tr\|A0A1R3JL16\|A0A1R3JL16_COCAP	9.7e-24	83.08	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05393 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24239-RA	Carg24239-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF12874	zf-met	coord: 39..61 e-value: 1.7E-6 score: 28.1
None	No IPR available	PANTHER	PTHR13278	UNCHARACTERIZED	coord: 1..65
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 31..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24239	Cla013139	Watermelon (97103) v1	carwmB0166
Carg24239	ClCG05G010670	Watermelon (Charleston Gray)	carwcgB0168
Carg24239	CmaCh01G003380	Cucurbita maxima (Rimu)	carcmaB0241
Carg24239	CmaCh14G008680	Cucurbita maxima (Rimu)	carcmaB0240
Carg24239	CmoCh01G003540	Cucurbita moschata (Rifu)	carcmoB0249
Carg24239	CmoCh14G008850	Cucurbita moschata (Rifu)	carcmoB0248
Carg24239	Lsi05G002750	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24239	Cp4.1LG03g05640	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24239	Cp4.1LG02g16680	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24239	Cla97C05G093000	Watermelon (97103) v2	carwmbB0181
Carg24239	Bhi01G001320	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24239	Carg07430	Silver-seed gourd	carcarB213

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24239	Cucumber (Gy14) v2	carcgybB0190
Carg24239	Cucumber (Gy14) v1	carcgyB0216
Carg24239	Wild cucumber (PI 183967)	carcpiB0203
Carg24239	Cucumber (Chinese Long) v2	carcuB0196
Carg24239	Cucumber (Chinese Long) v3	carcucB0203
Carg24239	Melon (DHL92) v3.5.1	carmeB0181
Carg24239	Melon (DHL92) v3.6.1	carmedB0185