Carg24225 (gene) Silver-seed gourd

Overview
NameCarg24225
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDouble-stranded RNA-binding protein
LocationCucurbita_argyrosperma_scaffold_191 : 50418 .. 52906 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTTGAACCTAGCCATGGCTTACACCCATTTCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATCTTCCATAAATTCACAAAAGTAAGCAGTCTGTCAAAAGAAGTCCCTCTATTGCATGCTTATAATTTTGATTGTGCCTTAACTTATTTTCTTATTGGTCTTTAATGTTCTGAATGTTTGTTCATGCTGTGTTATGATATTGATTATTGTGTACCAGCCCTTCACTAATGGTATTAAATATTGACATGTTGAAAAGAAAACATATATATATTTGATTGCTATACTTTATATTGACTTCGAATCTGATATACAAACTATGTCATTTGTTCTTATTTCAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGGTATTTAATTGTTGGAAACAACTTCTGAATTATTTCAAAATACTCGGTGCCTTGTCAAAGTTGCCTTTATTAAATGATAATAATAATAGTTATTGCTACTATTATTTTGTAGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAACATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAAGTCTTCCTCCATGATCTTTTTTCATGAAACTACATCTAACTTTATAATGTATCTTCTCGTTGTTTAGGGTATTACATAATTGTTTACAGTAAACACCAGTCTTGTTACAACTAGAGCTCTTCAATTTGCACATTCATGTTGACGACAAATTTCTGCATTAAGACTACTAGGCTGCAACTTCTTTCAATGAAAAGTTTATTTATTATTACTCTATTTTGAAGTGATTGATATCCTTTCAATGTGGGATGTAGATTTAAATCATGGTAGTCATCAAAGATACTATAATATCTTACAACTTTCTTAATACTCCATATAGTATCTGGTAAGATTTGATAGTTGTGCCTATGACCAGTAGAGATTTACTTTACTTAATCTGGATGCTCACAACTGTTAAAAATGTAAAGGAAACTGAGGGTCCTTGGTTGTTGTGTATGATATATGTGATATTTTGGGGCTACATGATAAGAAAGATGGCATGTCCCCTCGAGTCCTGCGATGTTTTACACGAATAATATTAATTTGCGCTTCTTATGTGTTAGTTATTTCAATAGTATAACCAAATCTTCTTTTGCTAAAAATGAGCAGGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACTGTAAAGTATCCTGTATTATAAGTGCTCATCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAATCAGTTCATATGTTATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCCTTAGGAGCCAAAAAAAAAAACATCACAGATTGGTTTGGATACTCATAGGATTAAGGTTAAGCTTCCTGGCTCAGTTTAATTGTTTATATGATGCATTGAAGTAATATTTGTTAATGCAGGGGTTTGAGATAATATTACGTACGGCCTGTTATGACCTTATATACTAGTTTTAAAGTTTAGAGACTAAATTTATAATTTTTGTTTCCATGTAAGTTAGATGTTTTAAATTTTAAACTATAAGCCATGTTCATATTAGATATTATGAGTATTTAAGCTTCATATGTGTGTAAAGTTATAGGTTTGTTCCTTTTCTTAAACATGTGTCACCTTTTTTTTTTTCTTTAAATAAATACTATGGAATGAGAAATAGTATATATGAATATCAAAGATAATTAATATCACGAAGTTTATGTGTTTCGATATAAAAGAAAATTAATGTTCAAGAATTAACTGTTTATGCTGTGAATTAGAGTGATATATA

mRNA sequence

ATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTTGAACCTAGCCATGGCTTACACCCATTTCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATCTTCCATAAATTCACAAAAGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAACATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACTGTAAAGTATCCTGTATTATAAGTGCTCATCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAATCAGTTCATATGTTATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCCTTAGGAGCCAAAAAAAAAAACATCACAGATTGGTTTGGATACTCATAGGATTAAGGTTAAGCTTCCTGGCTCAGTTTAATTGTTTATATGATGCATTGAAGTAATATTTGTTAATGCAGGGGTTTGAGATAATATTACGTACGGCCTGTTATGACCTTATATACTAGTTTTAAAGTTTAGAGACTAAATTTATAATTTTTGTTTCCATGTAAGTTAGATGTTTTAAATTTTAAACTATAAGCCATGTTCATATTAGATATTATGAGTATTTAAGCTTCATATGTGTGTAAAGTTATAGGTTTGTTCCTTTTCTTAAACATGTGTCACCTTTTTTTTTTTCTTTAAATAAATACTATGGAATGAGAAATAGTATATATGAATATCAAAGATAATTAATATCACGAAGTTTATGTGTTTCGATATAAAAGAAAATTAATGTTCAAGAATTAACTGTTTATGCTGTGAATTAGAGTGATATATA

Coding sequence (CDS)

ATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTTGAACCTAGCCATGGCTTACACCCATTTCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATCTTCCATAAATTCACAAAAGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAACATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGTGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGA

Protein sequence

MYERDKRKRIIKGAPIANVLSDRSPIETFEPSHGLHPFPRTFLFKTPLFLSSQIFHKFTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQVATGTSQTAPCSIAQ
Homology
[Close]
BLAST of Carg24225 vs. NCBI nr
Match: XP_022935532.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 3.4e-92
Identity = 219/226 (96.90%), Postives = 220/226 (97.35%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ
Sbjct: 159 EDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 218

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV
Sbjct: 219 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 278

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSERXXXXXXXXX 239
           TTTVNEDKEVNGAILDNVVACGAISEICPT SHLGPEFRSIKP ASS    XXXXXXXXX
Sbjct: 279 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPEFRSIKPEASSXXXXXXXXXXXXX 338

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 286
           XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ
Sbjct: 339 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 384

[Close]
BLAST of Carg24225 vs. NCBI nr
Match: XP_022984141.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 334.7 bits (857), Expect = 3.0e-88
Identity = 210/215 (97.67%), Postives = 212/215 (98.60%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ
Sbjct: 159 EDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 218

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMP+NTVEHV
Sbjct: 219 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 278

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSERXXXXXXXXX 239
           TTTVNEDKEVNGAILDNVVACGAISEICPT SHLGPE RSIKPVASSPSER XXXXXXXX
Sbjct: 279 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLXXXXXXXX 338

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATG 275
           XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATG
Sbjct: 339 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATG 373

[Close]
BLAST of Carg24225 vs. NCBI nr
Match: XP_022984143.1 (double-stranded RNA-binding protein 4-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 327.4 bits (838), Expect = 4.8e-86
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ
Sbjct: 159 EDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 218

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMP+NTVEHV
Sbjct: 219 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 278

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSER 231
           TTTVNEDKEVNGAILDNVVACGAISEICPT SHLGPE RSIKPVASSPSER
Sbjct: 279 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSER 329

[Close]
BLAST of Carg24225 vs. NCBI nr
Match: XP_023526614.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526615.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 2.4e-85
Identity = 211/226 (93.36%), Postives = 214/226 (94.69%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ
Sbjct: 159 EDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 218

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKY+P+NTVEHV
Sbjct: 219 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYLPENTVEHV 278

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSERXXXXXXXXX 239
           TTTVNEDKEVNGAILDNVV            SHLGPEFRSIKPVASSPSERXXXXXXXXX
Sbjct: 279 TTTVNEDKEVNGAILDNVV----------PISHLGPEFRSIKPVASSPSERXXXXXXXXX 338

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 286
           XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ
Sbjct: 339 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 374

[Close]
BLAST of Carg24225 vs. NCBI nr
Match: XP_022935533.1 (double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 3.8e-83
Identity = 209/226 (92.48%), Postives = 210/226 (92.92%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ
Sbjct: 159 EDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 218

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV
Sbjct: 219 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 278

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSERXXXXXXXXX 239
           TTTVNEDKEVNGAILDNVVA           SHLGPEFRSIKP ASS    XXXXXXXXX
Sbjct: 279 TTTVNEDKEVNGAILDNVVA----------ISHLGPEFRSIKPEASSXXXXXXXXXXXXX 338

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 286
           XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ
Sbjct: 339 XXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQTAPCSIAQ 374

[Close]
BLAST of Carg24225 vs. TAIR10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-07
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 64  LCKSILSEYTVKMSLKRPMYTTKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLA 123
           LCK++L EY  KM+   P+Y  ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 160

Query: 124 ARAAILSL 130
            R A+L++
Sbjct: 161 GRTALLAI 168

[Close]
BLAST of Carg24225 vs. TAIR10
Match: AT2G28380.1 (dsRNA-binding protein 2)

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-05
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 66  KSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARA 125
           K++L E   ++    P YTT +   G  P+F  T+   G+ +TGD +++KK+AE+ AA A
Sbjct: 89  KNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAMA 148

Query: 126 AILSL 130
           A  SL
Sbjct: 149 AWSSL 153

[Close]
BLAST of Carg24225 vs. TAIR10
Match: AT3G26932.1 (dsRNA-binding protein 3)

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 27/89 (30.34%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 66  KSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARA 125
           K++L E   +  L  P+YT+ +   G +P F  T+   G+ + G+ +++KK+AE+ AA A
Sbjct: 89  KNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAAIA 148

Query: 126 AILSLHD-------AGNPKSQKTLAEIIA 147
           A  SL          G  K Q+ +A +++
Sbjct: 149 AWFSLRKMPRLDPLRGEEKEQEIVARVLS 177

[Close]
BLAST of Carg24225 vs. TAIR10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4)

HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0 

Query: 66  KSILSEYTVKMSLKRPMYTTKQHEGS-VPIFQSTLVFDGVVYTGDISRSKKEAEQLAARA 125
           K++L E   K S   P Y T     S  P F ST+ F G V++G+ +++KK AE  AA+ 
Sbjct: 84  KNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKV 143

Query: 126 AILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVN 185
           A +S+    N  S +T +  + S+ R   +   VK S P +I  +  P + V     T +
Sbjct: 144 AFMSIK---NGNSNQTGSPTLPSE-RQEDVNSNVKSS-PQEIHSQ--PSSKVVMTPDTPS 202

Query: 186 EDKEVN 191
           +  +VN
Sbjct: 204 KGIKVN 202

[Close]
BLAST of Carg24225 vs. TAIR10
Match: AT5G41070.1 (dsRNA-binding protein 5)

HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 29/103 (28.16%), Postives = 52/103 (50.49%), Query Frame = 0 

Query: 51  SSQIFHKFTKDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQSTLVFDGVVYTGD 110
           S  +  K   +  + K++L E   +  L  PMYT+ +      P F  T+   G+ +TG+
Sbjct: 74  SKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGE 133

Query: 111 ISRSKKEAEQLAARAA------ILSLHDAGNPKSQKTLAEIIA 147
            +++KK+AE+ AA AA      + SL      K Q+ +A +++
Sbjct: 134 SAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLS 176

[Close]
BLAST of Carg24225 vs. Swiss-Prot
Match: sp|Q6YW64|DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-10
Identity = 56/186 (30.11%), Postives = 94/186 (50.54%), Query Frame = 0 

Query: 52  SQIFHKFTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDIS 111
           + +F    +D++  KSIL EYT K    +P Y+  + EGSV  + S++ F G  YTG  +
Sbjct: 116 TDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAA 175

Query: 112 RSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMM-----QKVKDSHPSQI 171
           R+KK+AEQ AARAA+ SL       +  ++A+I+ SK +L   +      K  DS+P+  
Sbjct: 176 RNKKDAEQKAARAAVKSL----LATNYTSMAKIVRSKEKLIRAISPSGYNKGIDSNPTN- 235

Query: 172 QPKYMPDNTVEHVTTTVNE--DKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVA 231
             K +P   ++    ++ +  D E++   +   +         P  +   P+ R     A
Sbjct: 236 --KKLPFAPIKFTPPSIFKLYDGEIDMLSVPQAL-------FAPLVAAEEPKVRPAAEPA 287

[Close]
BLAST of Carg24225 vs. Swiss-Prot
Match: sp|O04492|DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 64  LCKSILSEYTVKMSLKRPMYTTKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLA 123
           LCK++L EY  KM+   P+Y  ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 160

Query: 124 ARAAILSL 130
            R A+L++
Sbjct: 161 GRTALLAI 168

[Close]
BLAST of Carg24225 vs. Swiss-Prot
Match: sp|Q0IV63|DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05
Identity = 34/107 (31.78%), Postives = 53/107 (49.53%), Query Frame = 0 

Query: 64  LCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAA 123
           LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 177

Query: 124 RAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 170
           R A+L++       +      I+    R+   ++K+    P  ++ K
Sbjct: 178 RTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPKPLKIK 223

[Close]
BLAST of Carg24225 vs. Swiss-Prot
Match: sp|Q0DJA3|DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.9e-05
Identity = 34/107 (31.78%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 64  LCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAA 123
           LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AA
Sbjct: 120 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 179

Query: 124 RAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 170
           R A+L++       +      I+    R+   ++K     P  ++ K
Sbjct: 180 RTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKAK 225

[Close]
BLAST of Carg24225 vs. Swiss-Prot
Match: sp|Q0IQN6|DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.3e-05
Identity = 34/107 (31.78%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 64  LCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAA 123
           LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 177

Query: 124 RAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 170
           R A+L++       +      I+    R+   ++K     P  ++ K
Sbjct: 178 RTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKVK 223

[Close]
BLAST of Carg24225 vs. TrEMBL
Match: tr|A0A1S3C4R2|A0A1S3C4R2_CUCME (uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 147/228 (64.47%), Postives = 161/228 (70.61%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DL+LCKSILSEYT KM L+RP+YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQ
Sbjct: 158 EDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQ 217

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLHDA N KSQKTLA+IIASKVR HAM+QKVKDSH SQIQPK MP+NTVE V
Sbjct: 218 LAARAAILSLHDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERV 277

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSER-XXXXXXXX 239
             TVNEDK V  A+ D+ V CGAISE CP TS   PEF S KP  SSP  R         
Sbjct: 278 AMTVNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPST 337

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQT-APCSIAQ 286
                                     LCMEN VAT TSQT APCS+AQ
Sbjct: 338 LEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 384

[Close]
BLAST of Carg24225 vs. TrEMBL
Match: tr|A0A1S3C485|A0A1S3C485_CUCME (uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.0e-63
Identity = 147/229 (64.19%), Postives = 161/229 (70.31%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DL+LCKSILSEYT KM L+RP+YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQ
Sbjct: 158 EDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQ 217

Query: 120 LAARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEH 179
           LAARAAILSLH DA N KSQKTLA+IIASKVR HAM+QKVKDSH SQIQPK MP+NTVE 
Sbjct: 218 LAARAAILSLHEDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVER 277

Query: 180 VTTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSER-XXXXXXX 239
           V  TVNEDK V  A+ D+ V CGAISE CP TS   PEF S KP  SSP  R        
Sbjct: 278 VAMTVNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPS 337

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQT-APCSIAQ 286
                                      LCMEN VAT TSQT APCS+AQ
Sbjct: 338 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 385

[Close]
BLAST of Carg24225 vs. TrEMBL
Match: tr|A0A0A0LCN7|A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 139/228 (60.96%), Postives = 156/228 (68.42%), Query Frame = 0 

Query: 61  DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 120
           DLMLCKSILSEYT KM L+RP+YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQL
Sbjct: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158

Query: 121 AARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 180
           AARAAILSLH DA NPKSQK L +IIASKVR HAM+QKVKDS+ SQ QPK MP+NTVE V
Sbjct: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218

Query: 181 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSER-XXXXXXXX 240
             TVNE KE+  A+LD  + CGAISE CP TS   PEF + KP  SSP  R         
Sbjct: 219 AMTVNEGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFVRST 278

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQT-APCSIAQ 286
                                     LCMEN+VAT TSQT APCS+A+
Sbjct: 279 LEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 325

[Close]
BLAST of Carg24225 vs. TrEMBL
Match: tr|A0A1S3C4M5|A0A1S3C4M5_CUCME (double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.3e-35
Identity = 106/228 (46.49%), Postives = 117/228 (51.32%), Query Frame = 0 

Query: 60  KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 119
           +DL+LCKSILSEYT KM L+RP+YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQ
Sbjct: 158 EDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQ 217

Query: 120 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 179
           LAARAAILSLH                                                 
Sbjct: 218 LAARAAILSLH------------------------------------------------- 277

Query: 180 TTTVNEDKEVNGAILDNVVACGAISEICPTTSHLGPEFRSIKPVASSPSER-XXXXXXXX 239
              VNEDK V  A+ D+ V CGAISE CP TS   PEF S KP  SSP  R         
Sbjct: 278 ---VNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPST 332

Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXXLCMENQVATGTSQT-APCSIAQ 286
                                     LCMEN VAT TSQT APCS+AQ
Sbjct: 338 LEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 332

[Close]
BLAST of Carg24225 vs. TrEMBL
Match: tr|A0A2K1X750|A0A2K1X750_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G126700v3 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = 0 

Query: 58  FTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEA 117
           + +D + CKSIL+E+ VK++ ++P Y T Q  G +P+F STLVFDGV YTGD  R+KKEA
Sbjct: 84  YLQDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEA 143

Query: 118 EQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNT-V 177
           EQLAARA ILSL   GN  S K L EII SK +L+A + +VKD  PS  QP  +P    V
Sbjct: 144 EQLAARAVILSL--IGNSGSSKILYEIIKSKSKLYAALDRVKD--PSHSQPNIVPVAVKV 203

Query: 178 EHVT-TTVNEDKEVNGAI 194
            H + TTV++++EV+ A+
Sbjct: 204 GHCSETTVDQEQEVSTAV 217

The following BLAST results are available for this feature:
BLAST of Carg24225 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935532.13.4e-9296.90double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata][more]
XP_022984141.13.0e-8897.67double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima][more]
XP_022984143.14.8e-8697.66double-stranded RNA-binding protein 4-like isoform X3 [Cucurbita maxima][more]
XP_023526614.12.4e-8593.36double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022935533.13.8e-8392.48double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata][more]
BLAST of Carg24225 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09700.17.1e-0741.18dsRNA-binding domain-like superfamily protein[more]
AT2G28380.15.1e-0538.46dsRNA-binding protein 2[more]
AT3G26932.11.5e-0430.34dsRNA-binding protein 3[more]
AT3G62800.19.6e-0431.75double-stranded-RNA-binding protein 4[more]
AT5G41070.19.6e-0428.16dsRNA-binding protein 5[more]
BLAST of Carg24225 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6YW64|DRB4_ORYSJ2.9e-1030.11Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|O04492|DRB1_ARATH1.3e-0541.18Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE... [more]
sp|Q0IV63|DRB7_ORYSJ2.8e-0531.78Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|Q0DJA3|DRB3_ORYSJ4.9e-0531.78Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|Q0IQN6|DRB8_ORYSJ6.3e-0531.78Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
BLAST of Carg24225 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C4R2|A0A1S3C4R2_CUCME2.0e-6464.47uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3C485|A0A1S3C485_CUCME5.0e-6364.19uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LCN7|A0A0A0LCN7_CUCSA1.5e-5960.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G345370 PE=4 SV=1[more]
tr|A0A1S3C4M5|A0A1S3C4M5_CUCME3.3e-3546.49double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2K1X750|A0A2K1X750_POPTR1.0e-2352.17Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G126700v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24225-RACarg24225-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 65..130
e-value: 8.2E-10
score: 48.6
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 66..128
e-value: 2.4E-11
score: 44.1
IPR014720Double-stranded RNA-binding domainCDDcd00048DSRMcoord: 66..129
e-value: 3.24685E-13
score: 62.2899
NoneNo IPR availableGENE3DG3DSA:3.30.160.20coord: 49..134
e-value: 7.2E-18
score: 66.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..285
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 59..284
NoneNo IPR availablePANTHERPTHR11207:SF8SUBFAMILY NOT NAMEDcoord: 59..284
NoneNo IPR availableSUPERFAMILYSSF54768dsRNA-binding domain-likecoord: 59..129

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24225Cp4.1LG03g05940Cucurbita pepo (Zucchini)carcpeB0257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg24225Watermelon (97103) v2carwmbB0181
Carg24225Wax gourdcarwgoB0227
Carg24225Silver-seed gourdcarcarB213
Carg24225Cucurbita maxima (Rimu)carcmaB0240
Carg24225Cucurbita maxima (Rimu)carcmaB0241
Carg24225Cucurbita moschata (Rifu)carcmoB0248
Carg24225Cucurbita moschata (Rifu)carcmoB0249
Carg24225Cucurbita pepo (Zucchini)carcpeB0256
Carg24225Bottle gourd (USVL1VR-Ls)carlsiB158
Carg24225Melon (DHL92) v3.5.1carmeB0181
Carg24225Melon (DHL92) v3.6.1carmedB0185
Carg24225Watermelon (Charleston Gray)carwcgB0168
Carg24225Watermelon (97103) v1carwmB0166