Carg24209 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24209
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	villin 4
Location	Cucurbita_argyrosperma_scaffold_225 : 257247 .. 258093 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGGATGAAAGGATCCTCACAAATATATCCATACGAGCGTCTAAAAACTACATCAGCCGACCCTATTTCAGACATTGATGTGACAAAACGAGAGGTAATACTAAAACAGTCATGTTTCAAGTTGAATCTATAGATTCTTAACATGATTTTTTCTGAGATGTTTAATTTTGCAACTCTGCAGACATACCTTTCATCAGAAGAATTCAGGGAGAAGTTTGGAATGACTAAAGACGCCTTTTATAAGTTGCCAAAATGGAAACAGAATAAGCATAAAATGGCCCTTCAACTATTCTAACTGTTCTTATATGGTTTCCTTTGATCATTTCACTCAGTTTCCTGCAGTTATATATTACCAGTGGAAGAAGCTTGGCTTTCAAATCCATATGTTGTTAGATTAGATCTAAGGAGCCTCCTGAACTGATTGAACTCAACTGGTAAGGAGTGGAAGGGACAGCTTCAGTGCATTTTTAGCTGCTTCTGTTGCCCAGAGACTTGTGTTCATGATTGATGGACGAAACTCGAGTTTTGTTTTTTTCGCCTGCAGTCGATTGCAAACATCTTTAATTTTTCTTGCCCTGTATTAAGCATTTGAGCCTGTGGGTGGTGGGTGTTCAGTTTTTAGGTGTTGTGAAGAGGCTATGTGGACTTTGCATTTTTTTTTCTATTTGTTGGTAACATATGGTTTGATTGGGGGGTCAGTTTGATTTTTCATTCAATTTTTGGGTGTTCAGAGGAGCAATAGGTGGGTCTGTCATTATGGCTTTGTGCATTTCCAGGAAGAACAACGTGGTTGTACAGCAGAGTGTAATATTCTAGATGACAATAAACTTATAAAAGTGTGA

mRNA sequence

ATGAAATGGATGAAAGGATCCTCACAAATATATCCATACGAGCGTCTAAAAACTACATCAGCCGACCCTATTTCAGACATTGATGTGACAAAACGAGAGAGGAGCAATAGGTGGGTCTGTCATTATGGCTTTGTGCATTTCCAGGAAGAACAACGTGGTTGTACAGCAGAGTGTAATATTCTAGATGACAATAAACTTATAAAAGTGTGA

Coding sequence (CDS)

ATGAAATGGATGAAAGGATCCTCACAAATATATCCATACGAGCGTCTAAAAACTACATCAGCCGACCCTATTTCAGACATTGATGTGACAAAACGAGAGAGGAGCAATAGGTGGGTCTGTCATTATGGCTTTGTGCATTTCCAGGAAGAACAACGTGGTTGTACAGCAGAGTGTAATATTCTAGATGACAATAAACTTATAAAAGTGTGA

Protein sequence

MKWMKGSSQIYPYERLKTTSADPISDIDVTKRERSNRWVCHYGFVHFQEEQRGCTAECNILDDNKLIKV

Homology

[Close]

BLAST of Carg24209 vs. NCBI nr
Match: XP_022938186.1 (villin-4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           IYPYERLKTTSADPISDIDVTKRE
Sbjct: 911 IYPYERLKTTSADPISDIDVTKRE 934

[Close]

BLAST of Carg24209 vs. NCBI nr
Match: XP_022938188.1 (villin-4 isoform X3 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           IYPYERLKTTSADPISDIDVTKRE
Sbjct: 908 IYPYERLKTTSADPISDIDVTKRE 931

[Close]

BLAST of Carg24209 vs. NCBI nr
Match: XP_022938187.1 (villin-4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           IYPYERLKTTSADPISDIDVTKRE
Sbjct: 910 IYPYERLKTTSADPISDIDVTKRE 933

[Close]

BLAST of Carg24209 vs. NCBI nr
Match: XP_022938189.1 (villin-4 isoform X4 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           IYPYERLKTTSADPISDIDVTKRE
Sbjct: 907 IYPYERLKTTSADPISDIDVTKRE 930

[Close]

BLAST of Carg24209 vs. NCBI nr
Match: XP_022969600.1 (villin-4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           IYPYERLKTTSADPISDIDVTKRE
Sbjct: 910 IYPYERLKTTSADPISDIDVTKRE 933

[Close]

BLAST of Carg24209 vs. TAIR10
Match: AT4G30160.2 (villin 4)

HSP 1 Score: 44.7 bits (104), Expect = 2.7e-05
Identity = 18/23 (78.26%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 11  YPYERLKTTSADPISDIDVTKRE 34
           +PY+RLKTTS DP+SDIDVT+RE
Sbjct: 924 HPYDRLKTTSTDPVSDIDVTRRE 946

[Close]

BLAST of Carg24209 vs. TAIR10
Match: AT5G57320.1 (villin, putative)

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 5   KGSSQIYPYERLKTTSADPISDIDVTKRE 34
           + S   +PYERLKT S DP+SD+D+T+RE
Sbjct: 897 ESSLPTFPYERLKTDSEDPVSDVDLTRRE 925

[Close]

BLAST of Carg24209 vs. Swiss-Prot
Match: sp|B8ATT7|VLN4_ORYSI (Villin-4 OS=Oryza sativa subsp. indica OX=39946 GN=VLN4 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 7   SSQIYPYERLKTTSADPISDIDVTKRE 34
           +S IYPYERL TTS DP  DIDVTKRE
Sbjct: 883 NSTIYPYERLTTTSDDPAPDIDVTKRE 909

[Close]

BLAST of Carg24209 vs. Swiss-Prot
Match: sp|Q0JAD9|VLN4_ORYSJ (Villin-4 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN4 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 7   SSQIYPYERLKTTSADPISDIDVTKRE 34
           +S IYPYERL TTS DP  DIDVTKRE
Sbjct: 883 NSTIYPYERLTTTSDDPAPDIDVTKRE 909

[Close]

BLAST of Carg24209 vs. Swiss-Prot
Match: sp|O65570|VILI4_ARATH (Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-04
Identity = 18/23 (78.26%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 11  YPYERLKTTSADPISDIDVTKRE 34
           +PY+RLKTTS DP+SDIDVT+RE
Sbjct: 915 HPYDRLKTTSTDPVSDIDVTRRE 937

[Close]

BLAST of Carg24209 vs. Swiss-Prot
Match: sp|Q67U26|VLN3_ORYSJ (Villin-3 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN3 PE=2 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 8.4e-04
Identity = 17/24 (70.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 10  IYPYERLKTTSADPISDIDVTKRE 34
           +YPYERL+T+S +P++DIDVTKRE
Sbjct: 910 VYPYERLRTSSINPVTDIDVTKRE 933

The following BLAST results are available for this feature:

BLAST of Carg24209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938186.1	7.2e-04	100.00	villin-4 isoform X1 [Cucurbita moschata]	[more]
XP_022938188.1	7.2e-04	100.00	villin-4 isoform X3 [Cucurbita moschata]	[more]
XP_022938187.1	7.2e-04	100.00	villin-4 isoform X2 [Cucurbita moschata]	[more]
XP_022938189.1	7.2e-04	100.00	villin-4 isoform X4 [Cucurbita moschata]	[more]
XP_022969600.1	7.2e-04	100.00	villin-4-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg24209 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30160.2	2.7e-05	78.26	villin 4	[more]
AT5G57320.1	1.4e-04	58.62	villin, putative	[more]

BLAST of Carg24209 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B8ATT7\|VLN4_ORYSI	2.9e-04	77.78	Villin-4 OS=Oryza sativa subsp. indica OX=39946 GN=VLN4 PE=3 SV=1	[more]
sp\|Q0JAD9\|VLN4_ORYSJ	2.9e-04	77.78	Villin-4 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN4 PE=3 SV=1	[more]
sp\|O65570\|VILI4_ARATH	4.9e-04	78.26	Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1	[more]
sp\|Q67U26\|VLN3_ORYSJ	8.4e-04	70.83	Villin-3 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN3 PE=2 SV=2	[more]

BLAST of Carg24209 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24209-RA	Carg24209-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24209	Wax gourd	carwgoB1164
Carg24209	Wax gourd	carwgoB1165
Carg24209	Silver-seed gourd	carcarB547
Carg24209	Cucumber (Gy14) v2	carcgybB0981
Carg24209	Cucumber (Gy14) v2	carcgybB0982
Carg24209	Cucumber (Gy14) v1	carcgyB1112
Carg24209	Cucurbita maxima (Rimu)	carcmaB1378
Carg24209	Cucurbita maxima (Rimu)	carcmaB1379
Carg24209	Cucurbita moschata (Rifu)	carcmoB1333
Carg24209	Cucurbita moschata (Rifu)	carcmoB1334
Carg24209	Cucurbita pepo (Zucchini)	carcpeB1381
Carg24209	Cucurbita pepo (Zucchini)	carcpeB1382
Carg24209	Wild cucumber (PI 183967)	carcpiB1032
Carg24209	Wild cucumber (PI 183967)	carcpiB1033
Carg24209	Cucumber (Chinese Long) v2	carcuB1008
Carg24209	Cucumber (Chinese Long) v2	carcuB1009
Carg24209	Cucumber (Chinese Long) v3	carcucB1038
Carg24209	Cucumber (Chinese Long) v3	carcucB1039
Carg24209	Bottle gourd (USVL1VR-Ls)	carlsiB908
Carg24209	Bottle gourd (USVL1VR-Ls)	carlsiB909
Carg24209	Melon (DHL92) v3.5.1	carmeB0969
Carg24209	Melon (DHL92) v3.5.1	carmeB0970
Carg24209	Melon (DHL92) v3.6.1	carmedB0979
Carg24209	Melon (DHL92) v3.6.1	carmedB0980
Carg24209	Watermelon (Charleston Gray)	carwcgB0969
Carg24209	Watermelon (Charleston Gray)	carwcgB0970
Carg24209	Watermelon (97103) v1	carwmB0994
Carg24209	Watermelon (97103) v1	carwmB0995
Carg24209	Watermelon (97103) v2	carwmbB1048
Carg24209	Watermelon (97103) v2	carwmbB1049