Carg24106 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24106
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_177 : 212367 .. 219993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATATGGAATCCAAGAAGTGGTGAAAATATTCATGTTGTGAGAGGTATGCTAGAAACGTGAGTGTACGACTCGTTTTTAATTTATCCTTATTAATCATAAACTACATGAACATTCCTCAGAGGATTTGGAAGTTGTAAAGGTGAAGTAACATAGAGGAGTAAAAAGCAAAATGTGGTGTGCCAGCGAGGACGCTGTGCCACGAGGGGATGGATTGGGGGGTCCCACGTCGATTGGAGAGGGGAACGATTGCCAACAAGGACGCTGGACCCCGAAGGGGGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGGAGCGAAGCATTCTTTACAAGTATGTGGAAACCTCTCCCTAACACACGCGTTTCATTGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTTATTTCTACTATTTCTTTCGATGATATTCTCGTTTTTTAGCGGAGTAAAGGGGGTTGTTCGGGGCGTTCTTCCCAGTGAATAACCCATCCTTTTCTTTCATGTCTCGAGTTGATTGGAATAGTTTATGCCACATTTTGAATCTCTGTTGGTTTGAATGACTTTGATTGAGCAACTAGACTGTACATTACATAACTATTGAGAAGAATTAAGGTTAAGTGTGAGATCCCGATTGTTTGGAGATGAGAACGAATAATTCTTTATAAGGTTAGTGGTGGGCTTGGGCTGTTACAAATGATATCAGAGCCAGACACCGGCTAGTGTGCTAGCGAGGACGCTGGGCCTCGAAGGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACGAGTGTGAGTGAGGATGCTGAGCCCCAAAAGGGGTAGATTGTGAGATCCCACATCAATTGGAGAAGGGAACGAATCGTTCTTTATAAGGGGTGGAAACCTCTCCCTAGCTGACGCGTTTTAAAAATCTTGAGGGAAAGCCCGAAAGGGAAAATCCAAAGAAAGCAATATCTGCTAGCAGTGGGCTTGAGTCGTTACATTAAGTTAGTACAGTGGTAAATAGTTAACGGTTAGGTTGGAAGTTGTAAAAAGGAGGGTTTTATGTGTTAGTTTTTATAGGAGCAGAAGAGACCTAGCATCTTGTGTCCTTTACTGAACTTCATTTGGTTATTTGACCTGAATTGTATGATAAATGCACAGTTGCAGCCCTGTTGGGTTGGCCTATCGCATTTGCTTGTAATGCTAAATGTTGAAGGCAGTTGTTCTCTAGGACCATTCTAGGACTCTCTGGACATGTAACAGCCAAGCCTAAGTTCATTGCTAGCAAATATTGTTCCTCTTTAGGCTTTCCCTCAAGGTTTTTAAAACGTGTCTGTCAAAGTTTTTAAAACGCTTCTGTCAAGGTTTTTAAAACGCGTATGTTAAGGATGTGAGTTCACTAAAATTTAGTAGTTATTGATTTGAAAGTTTATGAGGAAGTTTAGGAGATCGGTTGTGGAATCTTCACTATAAATACTCATGAGATGTATGTTATTTCAACAAAAAACAAAAAAAAAAAAAAAGAATTAATAAAGCATAAGTGCTTAAGGTTCCTCTATTCAAGAGCTCTTTCCCCTCAGGTTGTTCTTCCGCTTCAGTTATTTGTTCCGACATATTTCGATCGTGGGCAATTTCCAACAAGAGAGAGGTTTTCACACCCTTATAAAAAATGTTTTGTTCTCCCATCCAACCGATGCGAGATCTCACAATCCACACCCTTTTAGGACCTAGCAATCGGGCTTAGCGTCCTCGCTGGCACACATTTTGGTGTCTAGCTCTGATACCATTTGTAACCGCTCAAGTCCACCGCTAGCCGATATTGTCCTCTTTGAGCTTTCCCTTCCAGGCTTCCCCTCAAGGTTTTAAAACGAGTCTGCTAGGGAGAGGTTTCCACACTCTTATAAATAATGTTTCATTCTCCAACCCAACCGATGTGGGATCTTACAATTCACCCCTCTTCAGGTCCCAGCATCCTCGGCGGCACACTGCCTTGTGTCCACCTTCCTTCGGGGCTCAGTCTCCTCGCTGGCATATCCCCCGGTGTCTAGCTCTGATATTATTTGTAACAGCCTAAGCCCACTGCTAGCAGGTATTGTTCTCTTTGGGTTTTCCCTTTCGGATTCCCGCTCAAAGTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACATTCTTATAAAGAAGGTTTTGTTCTCCTCCCAACCAATGTGGGATCTGTTGGAAATTGCCTACAATCAAAATATGTCGAAACAAATTACTGAAACGGAAGAACAACTTGAGGGGAGAGAGCTTTTGAATAAAAGAACCTTAAGCACTTATGCTTATCAATTCTCTTTTGTTGTTGTGAAAATAACATACATCTCATGAGTTTTTATAGTGGAGAAAGTACAATCGATCTTCTAAACTTCTCTCAAGTTCCTAAACTTTCTTTTTAAGTTAAGCAACTACTAACAAATATTCGTAATTAAAGATAACAATTTCCCTAAACTTATTCAAATCAATAACACTACTAAATAATTATCTTAAAATTGCTCTAGGTTAATAATTTCTTTTTGATAAGTCAAGCATATTAACTCACGAGACATTCATAATTATTAGAAAAAAGAAAACTTCAACACTATTTTCTTCGGTGCATGTGAATTTCTGATGTTTCGATGTACGGTGCAATGGATAGATTGAAATGAAGATGTGATGTCCTACATCGTTTGGGGAGGAGAACAAAACACCCTTTATAACGGGGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAGCCCAAAAGGAAAAAAACCCAAAGAGGATAATATCTGCTAGCGGTGGGCCTGGACCGTTACAAATGGTATCAAAACCAGACACCGGGCGATGTGCCAGCGAGGAGGCTATTCCCCGAATGGGGTAGAACGAGGCGGTGTGTCAGTAAGGACGCTGGGCCCCAAAGGAGAGTGGATTTGGTAGGGGTCTCACATCGATTGGAGAAATGAACGAGTGCCAGCGAGGACGCTGGGCCCTGAAGGAGGGTGGATTGTGATGTCCCACATCGGTTGGGGAGAAGAATGAAACACCCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAGCCTTGACCGAAGCCCGAAAGGGAAAGCCCAAAGAGTACAATATCTGTTACCAGTGAGCCTAGCTCTTATAGAAGACCCTTATTGTTAGGGATTGAAACTGTTTTTTATTCAAGTTAGTTGCTTGTGTCTGGTGTAAGCTGTAATTTCTATGGCCCTGGACTTCTATTTTGTAGTCTACTTTCTCATAAAAGAAAAAATGAAGACGCTCCTTTTGACAGGTCGTTAATTCTCTGGTTTCTCATTCAGATTCAATCGAGTGCATCGGTCTAGCGCCAAGGTACTGTGATTAATTATGATTCATGAAACTTTGTTAAAAATGTTCTTAGGAATCACGGACCTCCACAATGGTATGATATTGTCCACTGAGTATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCACCAATAGAGATGTATTCCTTACTTATAAACTCATGATCATTTTCTAAATTAGCCAATGTGGGACTCCCTCCCATTAATCCTCAACAATCCTTCCCTCGAACAAAGTACACTATAGAGCCTCTCATGAGGCTTATGGAGCCCTCGAACAGTCTCCCCATAATCAAGGCTCAACTCCTTCTCTGGTGTCCTCGAACAAAGTACAGCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGTTCACAACTTCTTTGTTCGACATTTGGGGATTCTATTGACATAACTAAGTTAAGGACAGGACTCTGATATCATGTTAGGAATCTCGACTCTCCACAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCGTGACTTTGCTTTGGGCTTCCAAAAAGGCCTCCTACCAATGGAGATGTATTCCTTATAAACCCGTGGTCATTCCCTAAATTAGCGAACGTGGGACTCCCTCCCAATAATCCTCAACAAAGGTCTAATTTAGTGCAAAATTTTATACGCTAATAGCCTAATGAATGTTCTGATTCTTTTCAATCTTGAATGGCAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGACGCCAGCACGAGGTCTATTCACTACTAAATTATGTTTTTAAGTTCGTAAAATAGTGTATTTAGTTTACCATTTATCTTCATAACCCTTCATTAGTGTTGATTGTAAGTAGATTTGAATAGTTGGGTTTGACTTGTTTAAGGATAAACATACCTTCCTTTTATTTTGGACAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGTGTGTCGATGGTCGTGTTCGAATATGGGATACCCTCTCTGGAGAGTGTGTAAGAACCTTCACCGGGCACTCCGACACCATCCAATCTCTATCGGTCTGCCAATCATGAGTACCTTGTTTCTGTTGCTCTCGATACTACCGCTCGGATTTTTGAGATTGTTGAGTATCATTGAGGGAATAGGATCTTTGTACTTGAATGTGACAAGTTTCGATCCCCATTGTCGATTCTTGTATAATTATACAATTTTATACCGTTGTATGTGTTTGTCTTGCAAGTAATTGTATGTTTATTGTTGTCAGTGTCGTGTAATTTTTATTTTCATTTAAGGGTTAGTCGAACCTAAGATTTTTCATGTAATGGATAATGTAATAACATAAATTACAACAATTTTTTAGTTGCTTGTTCGAGCGAATAAGGGCACTCCACGACCAACGTTGGAAGCGTAGGAGAATTGTGCTGTATGAAGGAGTCGTCATTGTTTATTTAAGAATAATGAAAACATAAATGTCGATTTTTTTTTTTTTCAATATTTGAGATGTTTTAGGATACACTTCCTTAAATGAAATTAGCGTTATCATTGCATACAATACTCGATAATAATTTTGTCGATATAAGATATTTGAGATTGAGTCAACATTTTGTCTTTGAAATCTTTATTAAGATTTATGGGACATGTCGAGTTGTTCCAAATCATTCATACATCTCTGCACTTCCACTTGACACCTATCGTAATAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAAACGGCTACCTTCTACCTTCTCTTGAATTCTCAAAACTTCTGCTCCATCCCTGTAGGGGTAAAGAACCCATCACTGTCTCGACTGTGGATAGATAACTCATCGTTGTCTCCGCTGTGCTAAATTGTTTTTAAAAAAATGGAAGATTGTGAATAAATTAAAAAAAAAGAAGGAAAAGAAACACATAAGGCAAAAAGAAAGATTGGAAAAGTGTTAAACTGTTTTAAATTGTTTATATGAAAATAATATTATAACGTACATATATATGTTCAAAGACGTTACTCATGCAAAGACTGCAATGTTTGCATAAAATCTAACACATGGACCATTGTAAATTGGATAAATAATTTTGCAGAAGTTCGAACTTGAAATTAATGACTTGGGCTCAGATAGATTTACTTGATTTCAAATAACAGAATCGAACTTTCAGCTTTAGCTAATAAGGTAAGTGACCACATTGTGGGAGTTAGCAAATTGATTGATCTATGATGGTACAAGTTTGGTGGCTCCTCCATGATGCTTACATACTATTTGTATTGTGATGTGTTGTATGTCATGTATACATATGATATCCTTTACGATGCTTACATACTATTTGTATTGTATTGTGATGTGTTGTACGTCATGTATACATATGATATCCTTTACACTATATTGTGAACGAAATGTTTAATTATAGTTATGAAAGTTATTACTCTAAACCTCCTAAGACGCAGTGCATCATGATCACATATTATCGACCAAAGATTTTCCGCACTGCCGATGTTTCTTGCAAGTTTACCCTACCCATGTTTTTGTAGAATGTCCTACCCATGTTTTCTCGCAAGGTGTCCACAAACTCACATTCTAATGTAAAGAGAAACGCCATAACTCACAAGGGAAGAAAAAAGAATCTGGGTACGTATATCAAATTCAAGGTGTTTAGACGAAAAATGGAGCTTCTACCACCCACAATTAATATATTGTTTGTATGCAAAAGATCATGTAATTTCTCATATATCTCAAAAAGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTGGGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAAACAAGCAAACTCATAATAATGAATCCATTTGGGTACAAATCGTTAGGACTTCTCTCAAAACCAACTGGCGGAGGAAGGTGCTGCACCATCAGCAGCCGGTGGTGCCGGTGGTGGAGGTGCTACTGCAGCCTCCCACTCATTTGCTGCCAATGGAACTGCAACAAAGAAAAAACAAGGGAAAGAAAGTGAGAAGAAATGCATGTCGAGTGAGGAAAGGAAAATTAATGTTATATAAGATATGAAAAGCCAGCAAAGCACTTAATTAGCACAATACTGTCACTTGCTTTGTGGGATCACTAAATTGTGGAAGTAACCATATCATTTGGGCTTAGGAGCACTCTTGTCATGGTTAACGCCTCTTTGGGGGTACGAAACATTCTTTATAAGGGTGTGGAAACCTTTTCCTAGCGGACACATTTAAAAAACCTTGAGGGGAAGCTCGAGAGGAAAAGCCCAAAGAGGACAATATCTGCTAGAGGTGGGCTTAGACCATTACAAATGGTATCAGAACCAAACACCGGGCGATGTGTAAGCGAGAAGGCTGAGCCCCGAAGGGGAATGGACACAAGGCGGTGTGTCAGCAAGGATGCCGGGCCCCAAAGGGGGCTGGATTGGGAGGTCCCACATCGGTTGGAGAAGGGAACGAGTGCCAGCGAGGATGCCGGCCCCAAATGGGGGTGGATTGTGAGATCTCACATCGGTTGGGGAGGAGAACAACACATTCTTTAAGGGCGTGGAATCCTTAGAGGGGAAGCCGGAAAGGAAAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGACTAGGGCGGTTACACTAGGCATTAAAATCTTAAATCTTAACACCTCAAACAGGAAATCAAACTGAGACCAACCTCAACTAGTCAGTTTCATCTTATAACTACTGGTCAGTGATGTCTAAAATGAAAAAAAAAAATGTAATGGCAAAGAACAGGGAAATTGGCAGTATGGGTAAGTACTAATCAAAAACTTCATATGGAGAGCAAGCAAGGTGAATGGTCTGGAGCTTGAGAGGAAAAGGTTCTTCAAGGAGACCAAAGCTAGTTTACATGAATAGACACACTAAAAGGCAGATAGGGATTCCATCAAACAATTAACGACAAAAGCTCGAGATTCAACCTGGCTCTGGGGCCCACTCGACACTCGAAGCGGCTGGAGCAGCAGGAGCAGGAACCACATCTGCAGCACCCCATTGAGCATCAGAAATTTGTGCGGCCCATTGATCTGAGGCAACAAGTGGTGCAGCACCATAGTCGGCAATGCCAAAGTCTGGGGGTGGAAGAGCCTCTTCCTCTTCTTTCTCCTTAG

mRNA sequence

ATGAGGATATGGAATCCAAGAAGTGGTGAAAATATTCATGTTGTGAGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGTGTGTCGATGGTCGTGTTCGAATATGGGATACCCTCTCTGGAGAGTGTGTAAGAACCTTCACCGGGCACTCCGACACCATCCAATCTCTATCGGTCTGCCAATCATGAGTACCTTGTTTCTGTTGCTCTCGATACTACCGCTCGGATTTTTGAGATTGTTGAGTATCATTGAGGGAATAGGATCTTTGTACTTGAATGACTTCTCTCAAAACCAACTGGCGGAGGAAGGTGCTGCACCATCAGCAGCCGGTGGTGCCGGTGGTGGAGGTGCTACTGCAGCCTCCCACTCATTTGCTGCCAATGGAACTGCAACAAAGAAAAAACAAGGGAAAGAAAGTGAGAAGAAATGCATGTCGAGTGAGGAAAGGAAAATTAATGGATTCCATCAAACAATTAACGACAAAAGCTCGAGATTCAACCTGGCTCTGGGGCCCACTCGACACTCGAAGCGGCTGGAGCAGCAGGAGCAGGAACCACATCTGCAGCACCCCATTGAGCATCAGAAATTTGTGCGGCCCATTGATCTGAGGCAACAAGTGGTGCAGCACCATAGTCGGCAATGCCAAAGTCTGGGGGTGGAAGAGCCTCTTCCTCTTCTTTCTCCTTAG

Coding sequence (CDS)

ATGAGGATATGGAATCCAAGAAGTGGTGAAAATATTCATGTTGTGAGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGTGTGTCGATGGTCGTGTTCGAATATGGGATACCCTCTCTGGAGAGTGTGTAAGAACCTTCACCGGGCACTCCGACACCATCCAATCTCTATCGGTCTGCCAATCATGAGTACCTTGTTTCTGTTGCTCTCGATACTACCGCTCGGATTTTTGAGATTGTTGAGTATCATTGAGGGAATAGGATCTTTGTACTTGAATGACTTCTCTCAAAACCAACTGGCGGAGGAAGGTGCTGCACCATCAGCAGCCGGTGGTGCCGGTGGTGGAGGTGCTACTGCAGCCTCCCACTCATTTGCTGCCAATGGAACTGCAACAAAGAAAAAACAAGGGAAAGAAAGTGAGAAGAAATGCATGTCGAGTGAGGAAAGGAAAATTAATGGATTCCATCAAACAATTAACGACAAAAGCTCGAGATTCAACCTGGCTCTGGGGCCCACTCGACACTCGAAGCGGCTGGAGCAGCAGGAGCAGGAACCACATCTGCAGCACCCCATTGAGCATCAGAAATTTGTGCGGCCCATTGATCTGAGGCAACAAGTGGTGCAGCACCATAGTCGGCAATGCCAAAGTCTGGGGGTGGAAGAGCCTCTTCCTCTTCTTTCTCCTTAG

Protein sequence

MRIWNPRSGENIHVVRGWSIMSYLDWHVEISCNRVCRWSCSNMGYPLWRVCKNLHRALRHHPISIGLPIMSTLFLLLSILPLGFLRLLSIIEGIGSLYLNDFSQNQLAEEGAAPSAAGGAGGGGATAASHSFAANGTATKKKQGKESEKKCMSSEERKINGFHQTINDKSSRFNLALGPTRHSKRLEQQEQEPHLQHPIEHQKFVRPIDLRQQVVQHHSRQCQSLGVEEPLPLLSP

Homology

[Close]

BLAST of Carg24106 vs. NCBI nr
Match: GAY39620.1 (hypothetical protein CUMW_045800 [Citrus unshiu])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   MRIWNPRSGENIHVVRGWSIMSYLDWHVEISCNRVCRWSCSNM 44
           + IWNP+ GEN HV+R WS +  L WH+++S +R+CRW   ++
Sbjct: 135 LSIWNPKGGENFHVIRRWSDLLELAWHIKVSSHRLCRWKSRSL 177

[Close]

BLAST of Carg24106 vs. TrEMBL
Match: tr|A0A2H5NHG4|A0A2H5NHG4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_045800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-06
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   MRIWNPRSGENIHVVRGWSIMSYLDWHVEISCNRVCRWSCSNM 44
           + IWNP+ GEN HV+R WS +  L WH+++S +R+CRW   ++
Sbjct: 135 LSIWNPKGGENFHVIRRWSDLLELAWHIKVSSHRLCRWKSRSL 177

The following BLAST results are available for this feature:

BLAST of Carg24106 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY39620.1	1.2e-05	46.51	hypothetical protein CUMW_045800 [Citrus unshiu]	[more]

BLAST of Carg24106 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24106 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24106 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H5NHG4\|A0A2H5NHG4_CITUN	7.9e-06	46.51	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_045800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24106-RA	Carg24106-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..202

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24106	Watermelon (97103) v2	carwmbB0703
Carg24106	Wax gourd	carwgoB0794
Carg24106	Cucumber (Gy14) v2	carcgybB0675
Carg24106	Cucumber (Gy14) v1	carcgyB0757
Carg24106	Cucurbita maxima (Rimu)	carcmaB0953
Carg24106	Cucurbita moschata (Rifu)	carcmoB0929
Carg24106	Cucurbita pepo (Zucchini)	carcpeB0954
Carg24106	Wild cucumber (PI 183967)	carcpiB0711
Carg24106	Cucumber (Chinese Long) v2	carcuB0699
Carg24106	Cucumber (Chinese Long) v3	carcucB0713
Carg24106	Bottle gourd (USVL1VR-Ls)	carlsiB617
Carg24106	Melon (DHL92) v3.5.1	carmeB0678
Carg24106	Melon (DHL92) v3.6.1	carmedB0690
Carg24106	Watermelon (Charleston Gray)	carwcgB0653
Carg24106	Watermelon (97103) v1	carwmB0675