Carg24096 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24096
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_217 : 373164 .. 374180 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGAAGCCAAGAAAATGCGAAGAGAAGTAGTTGCAATGGAGAAGGAACTTGCTGCTATGCGTGTAAGTAGGGAGAGCGATCAAAGGCCACGACGCCCGAGCGCTCAGAGGGGGGCTGTAATTGGTTCTCAGTCACTTCCTGTCAGGTGAATTCATATTTATGACCCTTTGCAAGGGTTACTTTTTGAAATAAAGCACGTTAGGAATCATGGACCCTCCACAATTATATGATGTTGTCTAATTTGAGCCCAAGTTCTCGTGGTTTTGCTTTTAGTTTCCCCAAAAGGTCTCATATCAATAGATATGTATTTCTTATGAACCAATGATCTTCCTCTTAATTAGCCAACGATGGGTTCCCTCCCAACAACCCTCCCCTTGAACAAAGTACACCATAGAGCCTCCTCTAAGGCATATGGAGCCCTCAAATAGCCTCCCCTTAATCGAGGCTCAACTCCTTCTCTAGGACCCAAGTACACTCTTTGTTCGACACTTGAGTCACTTTTGACTACACTTTCGAGACTCACAACTTCTTTATTCGATACTTGAGGATTCTATTGACATAGCTAAGTTAAGGGCATGACTCTGATCCTCCACAATGGTATGATATTGTCCATGTATTCTTTATTTATAAACTCCGATCATCCCTTTAATCAGCCAACGGAGACTCTCTCCCAACAATCCTCAACAAAGAACTCGATAAAACACAAAAAAAAATAATAATAATAAAAAAAAAAATGGTTGCACAGAATATGCACAGCCTTGCTACCCTTTCGACTATTTCGGTGCCTTATTTGTTTATAAAATGGATAGTTTCTTAAGAGTTCGTATTGTCTTCTCCATCTTCTGATTTCAAATTAGTGTCATTGTGATGTATTCACCTACCGTCTCGATGTGAATTCCGAGCGTATTTACTGTTCTTGCATCTGCAGTAGATCCATTACTGACCTGTTTCTTCTACCCTTCAACTCTCCAGGAATATCCGAAACAGATAGGGCGTCGACACAAGATTAA

mRNA sequence

ATGGAAGTAGAAGCCAAGAAAATGCGAAGAGAAGTAGTTGCAATGGAGAAGGAACTTGCTGCTATGCGTGTAAGTAGGGAGAGCGATCAAAGGCCACGACGCCCGAGCGCTCAGAGGGGGGCTTGTCATTGTGATGTATTCACCTACCGTCTCGATGTGAATTCCGAGCGTATTTACTGTTCTTGCATCTGCAGTAGATCCATTACTGACCTGTTTCTTCTACCCTTCAACTCTCCAGGAATATCCGAAACAGATAGGGCGTCGACACAAGATTAA

Coding sequence (CDS)

ATGGAAGTAGAAGCCAAGAAAATGCGAAGAGAAGTAGTTGCAATGGAGAAGGAACTTGCTGCTATGCGTGTAAGTAGGGAGAGCGATCAAAGGCCACGACGCCCGAGCGCTCAGAGGGGGGCTTGTCATTGTGATGTATTCACCTACCGTCTCGATGTGAATTCCGAGCGTATTTACTGTTCTTGCATCTGCAGTAGATCCATTACTGACCTGTTTCTTCTACCCTTCAACTCTCCAGGAATATCCGAAACAGATAGGGCGTCGACACAAGATTAA

Protein sequence

MEVEAKKMRREVVAMEKELAAMRVSRESDQRPRRPSAQRGACHCDVFTYRLDVNSERIYCSCICSRSITDLFLLPFNSPGISETDRASTQD

Homology

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BLAST of Carg24096 vs. NCBI nr
Match: XP_022153889.1 (microtubule-associated protein 70-2-like [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   MEVEAKKMRREVVAMEKELAAMRVSRESDQRPRRPSAQRGA 42
           MEVEAKKMRREVV++EKELAAMRVSRESDQRPRR SA RGA
Sbjct: 557 MEVEAKKMRREVVSIEKELAAMRVSRESDQRPRRQSAPRGA 597

The following BLAST results are available for this feature:

BLAST of Carg24096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153889.1	4.9e-08	90.24	microtubule-associated protein 70-2-like [Momordica charantia]	[more]

BLAST of Carg24096 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24096 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24096 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007010	cytoskeleton organization

Vocabulary: **INTERPRO**
Term	Definition
IPR009768	MAP70

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0045298	tubulin complex
molecular_function	GO:0008017	microtubule binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24096-RA	Carg24096-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	PANTHER	PTHR31246:SF2	MICROTUBULE-ASSOCIATED PROTEIN 70-1-RELATED	coord: 1..42
IPR009768	Microtubule-associated protein 70	PFAM	PF07058	MAP70	coord: 1..42 e-value: 6.7E-12 score: 44.8
IPR009768	Microtubule-associated protein 70	PANTHER	PTHR31246	FAMILY NOT NAMED	coord: 1..42

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24096	Cla97C04G072140	Watermelon (97103) v2	carwmbB0221
Carg24096	Bhi03G002029	Wax gourd	carwgoB0272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24096	Cucurbita pepo (Zucchini)	carcpeB0307
Carg24096	Cucumber (Gy14) v2	carcgybB0234
Carg24096	Cucurbita maxima (Rimu)	carcmaB0300
Carg24096	Cucurbita moschata (Rifu)	carcmoB0304
Carg24096	Wild cucumber (PI 183967)	carcpiB0250
Carg24096	Cucumber (Chinese Long) v2	carcuB0245
Carg24096	Cucumber (Chinese Long) v3	carcucB0249
Carg24096	Bottle gourd (USVL1VR-Ls)	carlsiB194
Carg24096	Melon (DHL92) v3.5.1	carmeB0224
Carg24096	Melon (DHL92) v3.6.1	carmedB0230
Carg24096	Watermelon (Charleston Gray)	carwcgB0213
Carg24096	Watermelon (97103) v1	carwmB0207