Carg24081 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24081
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	calcium-binding protein PBP1
Location	Cucurbita_argyrosperma_scaffold_217 : 141543 .. 141899 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGTCGCAGACCAATCCGGATTCGAGGACTGGCTACCGAAGATGGCGGAGAGGCTGGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGATTCAATCTTCTGAAGGACAGAGAGAAGGGGGTGATTGATTTCGAGAGTCTGAAGAGAAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGCGATGAGGATCTGAGAGAAATGTTGAGGGAGGGGGATTTCGACGGTGATGGCGCTCTCAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGAATTGATGGACGAGTCCTGGTTCTTGCTCGAGGATGCTCTAAACCAAGAGTTTAAGGGCTTCTGTTGA

mRNA sequence

ATGGCGTTTGTCGCAGACCAATCCGGATTCGAGGACTGGCTACCGAAGATGGCGGAGAGGCTGGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGATTCAATCTTCTGAAGGACAGAGAGAAGGGGGTGATTGATTTCGAGAGTCTGAAGAGAAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGCGATGAGGATCTGAGAGAAATGTTGAGGGAGGGGGATTTCGACGGTGATGGCGCTCTCAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGAATTGATGGACGAGTCCTGGTTCTTGCTCGAGGATGCTCTAAACCAAGAGTTTAAGGGCTTCTGTTGA

Coding sequence (CDS)

ATGGCGTTTGTCGCAGACCAATCCGGATTCGAGGACTGGCTACCGAAGATGGCGGAGAGGCTGGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGATTCAATCTTCTGAAGGACAGAGAGAAGGGGGTGATTGATTTCGAGAGTCTGAAGAGAAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGCGATGAGGATCTGAGAGAAATGTTGAGGGAGGGGGATTTCGACGGTGATGGCGCTCTCAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGAATTGATGGACGAGTCCTGGTTCTTGCTCGAGGATGCTCTAAACCAAGAGTTTAAGGGCTTCTGTTGA

Protein sequence

MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC

Homology

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BLAST of Carg24081 vs. NCBI nr
Match: XP_022929391.1 (calcium-binding protein PBP1-like [Cucurbita moschata] >XP_023552392.1 calcium-binding protein PBP1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 7.6e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 118

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BLAST of Carg24081 vs. NCBI nr
Match: XP_022985275.1 (calcium-binding protein PBP1 [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 1.6e-59
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDF SLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFSSLKRNAAALGLA 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGF 118
           DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDAL+QEFKGF
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALSQEFKGF 117

[Close]

BLAST of Carg24081 vs. NCBI nr
Match: XP_008452312.1 (PREDICTED: calcium-binding protein PBP1 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.2e-56
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAF A++SGFEDWLP MAERLGGEGLIGELCNGFNLL DREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           DLSDEDLR MLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Carg24081 vs. NCBI nr
Match: XP_004149304.1 (PREDICTED: calcium-binding protein PBP1 [Cucumis sativus] >KGN56198.1 hypothetical protein Csa_3G099590 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 6.9e-55
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAF A++SGFEDWLP MAERLGGEGLIGELCNGFNLL +REKGVIDFESLKRNAAALGL 
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLG 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           DLSDEDLR MLREGDFDGDGALNQMEFCVLMFRLSPELM+ESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Carg24081 vs. NCBI nr
Match: XP_022142860.1 (calcium-binding protein PBP1 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDED 66
           +SGF DWLP MA RLGGEGLIGELC+GF+LL DREKGVIDFESLKRNAAALGL DL+DED
Sbjct: 11  ESGFHDWLPTMAARLGGEGLIGELCSGFSLLMDREKGVIDFESLKRNAAALGLGDLTDED 70

Query: 67  LREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           LR MLREGDFDGDGALNQMEFCVLMFRLSPELMDES F L+ AL  EF+ FC
Sbjct: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMDESLFCLDQALTHEFRDFC 122

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BLAST of Carg24081 vs. TAIR10
Match: AT4G27280.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 156.8 bits (395), Expect = 8.5e-39
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAA-LGLADLSDE 66
           Q  F D+LP MA  LGGEGLIGELCNGF LL DREKGVI FESL+RNAAA LGL DL+DE
Sbjct: 16  QPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDE 75

Query: 67  DLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEF 115
           D+R M++EGDFD DGALNQMEFCVLMFRLSP+LM+ S  L+ + + +EF
Sbjct: 76  DVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of Carg24081 vs. TAIR10
Match: AT5G54490.1 (pinoid-binding protein 1)

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-34
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 10  FEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAA-ALGLADLSDEDLR 69
           F+D+ P MA +LGGEGLI E+C GF LL D++KGVI FESL+RNA+  LGL DL+D+D+R
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  EMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEF 115
            M+ EGDFD DGALNQMEFCVLMFRLSPELM+ S  ++ + + +EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

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BLAST of Carg24081 vs. TAIR10
Match: AT2G46600.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDED 66
           ++ +ED LP MAE++  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+  +S ED
Sbjct: 19  ETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKED 78

Query: 67  LREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQE 114
            + M+REGD DGDGALNQ EFCVLM RLSPE+M+++   LE AL QE
Sbjct: 79  AQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

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BLAST of Carg24081 vs. TAIR10
Match: AT4G37010.2 (centrin 2)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 31/93 (33.33%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 6   DQSG---FEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADL 65
           +QSG   F++++  M  + G    I EL   F ++     G I    +K  A  LG  + 
Sbjct: 78  NQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELG-ENF 137

Query: 66  SDEDLREMLREGDFDGDGALNQMEFCVLMFRLS 96
           +D D+ EM+ E D D DG +N  EF  +M R S
Sbjct: 138 TDNDIEEMIEEADRDKDGEVNLEEFMKMMKRTS 169

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BLAST of Carg24081 vs. TAIR10
Match: AT5G19450.1 (calcium-dependent protein kinase 19)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-06
Identity = 28/85 (32.94%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 17  MAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDEDLREMLREGDF 76
           +AE L  E + G +   F ++  ++ G I+ E LK     LG   + D DL+ ++   D 
Sbjct: 351 IAEHLSVEEVAG-IKEAFEMMDSKKTGKINLEELKFGLHKLGQQQIPDTDLQILMEAADV 410

Query: 77  DGDGALNQMEFCVLMFRLSPELMDE 102
           DGDG LN  EF  +   L     DE
Sbjct: 411 DGDGTLNYGEFVAVSVHLKKMANDE 434

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BLAST of Carg24081 vs. Swiss-Prot
Match: sp|O81831|CARP1_ARATH (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-37
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAA-LGLADLSDE 66
           Q  F D+LP MA  LGGEGLIGELCNGF LL DREKGVI FESL+RNAAA LGL DL+DE
Sbjct: 16  QPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDE 75

Query: 67  DLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEF 115
           D+R M++EGDFD DGALNQMEFCVLMFRLSP+LM+ S  L+ + + +EF
Sbjct: 76  DVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

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BLAST of Carg24081 vs. Swiss-Prot
Match: sp|Q9LSQ6|PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-33
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 10  FEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAA-ALGLADLSDEDLR 69
           F+D+ P MA +LGGEGLI E+C GF LL D++KGVI FESL+RNA+  LGL DL+D+D+R
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 70  EMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEF 115
            M+ EGDFD DGALNQMEFCVLMFRLSPELM+ S  ++ + + +EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of Carg24081 vs. Swiss-Prot
Match: sp|Q9ZPX9|KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-27
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDED 66
           ++ +ED LP MAE++  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+  +S ED
Sbjct: 19  ETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKED 78

Query: 67  LREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQE 114
            + M+REGD DGDGALNQ EFCVLM RLSPE+M+++   LE AL QE
Sbjct: 79  AQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

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BLAST of Carg24081 vs. Swiss-Prot
Match: sp|P06704|CDC31_YEAST (Cell division control protein 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC31 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-07
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 10  FEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDEDLRE 69
           ++D+   M E++     + E+   F L  D   G I  ++L+R A  LG   L+DE+LR 
Sbjct: 78  YDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-ETLTDEELRA 137

Query: 70  MLREGDFDGDGALNQMEFCVL 91
           M+ E D DGDG +N+ EF  +
Sbjct: 138 MIEEFDLDGDGEINENEFIAI 157

[Close]

BLAST of Carg24081 vs. Swiss-Prot
Match: sp|O15182|CETN3_HUMAN (Centrin-3 OS=Homo sapiens OX=9606 GN=CETN3 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 29  ELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDEDLREMLREGDFDGDGALNQMEFC 88
           E+   F L  D + G I   +L+R A  LG  ++SDE+LR M+ E D DGDG +NQ EF 
Sbjct: 102 EILKAFKLFDDDDSGKISLRNLRRVARELG-ENMSDEELRAMIEEFDKDGDGEINQEEFI 161

Query: 89  VLM 92
            +M
Sbjct: 162 AIM 163

[Close]

BLAST of Carg24081 vs. TrEMBL
Match: tr|A0A1S3BSY1|A0A1S3BSY1_CUCME (calcium-binding protein PBP1 OS=Cucumis melo OX=3656 GN=LOC103493375 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAF A++SGFEDWLP MAERLGGEGLIGELCNGFNLL DREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           DLSDEDLR MLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Carg24081 vs. TrEMBL
Match: tr|A0A0A0L347|A0A0A0L347_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099590 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.6e-55
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60
           MAF A++SGFEDWLP MAERLGGEGLIGELCNGFNLL +REKGVIDFESLKRNAAALGL 
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLG 60

Query: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           DLSDEDLR MLREGDFDGDGALNQMEFCVLMFRLSPELM+ESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Carg24081 vs. TrEMBL
Match: tr|A0A218XUS2|A0A218XUS2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr002471 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.7e-44
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 5   ADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSD 64
           A    F D+LP MA++LGGEGLIGELCNGFNLL D EKGVI F+SLKRNAA LGL DLSD
Sbjct: 8   AAPQNFHDFLPVMAQKLGGEGLIGELCNGFNLLVDGEKGVITFDSLKRNAALLGLKDLSD 67

Query: 65  EDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           +DLR MLREGDFDGDGALNQMEFCVLMFRLSPELMDES  LLE+AL ++F+GFC
Sbjct: 68  DDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDESEALLEEALEEDFRGFC 121

[Close]

BLAST of Carg24081 vs. TrEMBL
Match: tr|A0A2K1YJI3|A0A2K1YJI3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G129100v3 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.1e-44
Identity = 89/115 (77.39%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 4   VADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLS 63
           +A  S FED+LP MA +LGG+GL+GELCNGFNLL D EKGVI F+SLK+N+A LGL DLS
Sbjct: 120 MASSSNFEDFLPLMANKLGGDGLVGELCNGFNLLVDSEKGVITFDSLKKNSALLGLQDLS 179

Query: 64  DEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 119
           D+DLR MLREGDFDGDGALNQMEFCVLMFRLSPELM+ES FLLE+AL QEFK +C
Sbjct: 180 DDDLRCMLREGDFDGDGALNQMEFCVLMFRLSPELMEESQFLLEEALLQEFKHYC 234

[Close]

BLAST of Carg24081 vs. TrEMBL
Match: tr|A0A0A0L2H0|A0A0A0L2H0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081900 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 7   QSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLADLSDED 66
           +SGF+DWLP MA  LGGEGLIGELCNGFNLL DREKGVI+FESLKRNAAALGL DLSD++
Sbjct: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70

Query: 67  LREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFK 116
           LR MLREGDFDGDGALNQMEFCVLMFRLSPELM+ S +   ++L +EF+
Sbjct: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEASRYCFHESLRREFR 119

The following BLAST results are available for this feature:

BLAST of Carg24081 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929391.1	7.6e-62	100.00	calcium-binding protein PBP1-like [Cucurbita moschata] >XP_023552392.1 calcium-b...	[more]
XP_022985275.1	1.6e-59	98.29	calcium-binding protein PBP1 [Cucurbita maxima]	[more]
XP_008452312.1	2.2e-56	92.37	PREDICTED: calcium-binding protein PBP1 [Cucumis melo]	[more]
XP_004149304.1	6.9e-55	89.83	PREDICTED: calcium-binding protein PBP1 [Cucumis sativus] >KGN56198.1 hypothetic...	[more]
XP_022142860.1	5.3e-47	83.93	calcium-binding protein PBP1 [Momordica charantia]	[more]

BLAST of Carg24081 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27280.1	8.5e-39	71.56	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	1.3e-34	64.15	pinoid-binding protein 1	[more]
AT2G46600.1	2.3e-28	55.14	Calcium-binding EF-hand family protein	[more]
AT4G37010.2	1.1e-06	33.33	centrin 2	[more]
AT5G19450.1	4.2e-06	32.94	calcium-dependent protein kinase 19	[more]

BLAST of Carg24081 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81831\|CARP1_ARATH	1.5e-37	71.56	Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1	[more]
sp\|Q9LSQ6\|PBP1_ARATH	2.3e-33	64.15	Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1	[more]
sp\|Q9ZPX9\|KIC_ARATH	4.2e-27	55.14	Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2	[more]
sp\|P06704\|CDC31_YEAST	8.2e-07	35.80	Cell division control protein 31 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
sp\|O15182\|CETN3_HUMAN	1.4e-06	44.44	Centrin-3 OS=Homo sapiens OX=9606 GN=CETN3 PE=1 SV=2	[more]

BLAST of Carg24081 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSY1\|A0A1S3BSY1_CUCME	1.4e-56	92.37	calcium-binding protein PBP1 OS=Cucumis melo OX=3656 GN=LOC103493375 PE=4 SV=1	[more]
tr\|A0A0A0L347\|A0A0A0L347_CUCSA	4.6e-55	89.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099590 PE=4 SV=1	[more]
tr\|A0A218XUS2\|A0A218XUS2_PUNGR	4.7e-44	78.95	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr002471 PE=4 SV=1	[more]
tr\|A0A2K1YJI3\|A0A2K1YJI3_POPTR	8.1e-44	77.39	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G129100v3 PE=...	[more]
tr\|A0A0A0L2H0\|A0A0A0L2H0_CUCSA	1.2e-42	78.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24081-RA	Carg24081-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 66..94 e-value: 0.0024 score: 27.1
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 41..93 e-value: 1.0E-19 score: 69.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 62..97 score: 11.361
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 8..116 e-value: 1.3E-20 score: 75.4
None	No IPR available	PANTHER	PTHR44180:SF1	SUBFAMILY NOT NAMED	coord: 4..118
None	No IPR available	PANTHER	PTHR44180	FAMILY NOT NAMED	coord: 4..118
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 75..87
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 26..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24081	Cla011740	Watermelon (97103) v1	carwmB0206
Carg24081	Csa3G099590	Cucumber (Chinese Long) v2	carcuB0244
Carg24081	MELO3C016569	Melon (DHL92) v3.5.1	carmeB0223
Carg24081	ClCG10G006390	Watermelon (Charleston Gray)	carwcgB0212
Carg24081	CSPI03G05760	Wild cucumber (PI 183967)	carcpiB0249
Carg24081	Cucsa.074380	Cucumber (Gy14) v1	carcgyB0262
Carg24081	CmaCh16G008130	Cucurbita maxima (Rimu)	carcmaB0299
Carg24081	CmoCh16G008680	Cucurbita moschata (Rifu)	carcmoB0303
Carg24081	Lsi05G006760	Bottle gourd (USVL1VR-Ls)	carlsiB195
Carg24081	Cp4.1LG14g00130	Cucurbita pepo (Zucchini)	carcpeB0308
Carg24081	CsGy3G005880	Cucumber (Gy14) v2	carcgybB0233
Carg24081	MELO3C016569.2	Melon (DHL92) v3.6.1	carmedB0229
Carg24081	CsaV3_3G005850	Cucumber (Chinese Long) v3	carcucB0248
Carg24081	Cla97C10G190340	Watermelon (97103) v2	carwmbB0220
Carg24081	Bhi11G000573	Wax gourd	carwgoB0271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24081	Silver-seed gourd	carcarB255
Carg24081	Cucurbita maxima (Rimu)	carcmaB0301
Carg24081	Cucurbita pepo (Zucchini)	carcpeB0309