Carg24037 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24037
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hydroxyproline-rich glycoprotein family protein, putative isoform 2
Location	Cucurbita_argyrosperma_scaffold_166 : 136985 .. 139227 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCATTTTCTTCCAGCAAGAAGAGAGGGAATCAGACTGTGTCTCATGATTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGCTTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGTTTATGTTCCATCAAATTTTCCAGGTAATTTTATGTTTTCTGAAATAATTTGTGGATGGAAAAAAATAAAGGATCGTGTAATGGGAATAGGATATCGAGCTACTTGTTTGATGGTGGATGCTTCATTATAAAAGGGTTCAATTACGAATACATGGGTCAAAAATGGCCTAATGTGCCGGGTTATTATGTTCCCCTCCATAGAAAAATGTTACAAAGAAGCTTTCAAATCAATACAGACATGTAATCTATAAACAAAATCTAGTAGAAGGTGCTCCCAACTTGAGGTTGTAGAATGAACTTAGGGTCACAAAAAACTGTCGATTCTTTCTAGTTTGAACCTTTTGAGAGCTTCTGAATTTAGAGATGGCTGTATGGAGATGTTATTAGGAATATGAAATGCTTCTGGTTATGAACAAAGAGCCTGCATCATGGAGCAGTGCAGAAACAAACCAGAGTCTCAAGAATAGCTTGTGTATCCTCTCTACTACTGTGATTAAAACCAAATTCTTTCAAAAACCATGAAACGAACAGGACATTTATAACTTTACTTGCCTGGCTCTTCACACAAAAAGGAAAAAAAATCCACAAGCTATTTGTTTCAATGGAACTCTCCATAATCTTTTTAAGAGGAAAGGAGAGATTTTCTTGGTGTTGGAGAAAATTCCAACTAGGAAAAGGTGGCTTGCCACCATTCATGTCAGGCTTTCCCATATAAAACTTTTTGTCACTTTCTTAATCCGAGCCACTATGGGAGGGATTCTAAGAGAAACATAATGAGAATCAATTATAAAAGCTAGTCATATACTTTTGAGAAAATTAATGATAAAAGTTAGTCTTTCTTCCTTTTATGGTTCTTATTTGGTTTGATGAGCATGACTGTTCAATGTCTAGAGTATTAAGGATATACAATTAGATGTGTTTCTATTAGTGGTTTGGAATTAAATGTATGTTTGTTTTGCAAGCTTTTGATGGGGGAGGTAAATGTATATATTTAACATAAATGCTACATAGCACTCTTTTGTGCAAAATATACTTCTGTAGTTTGATTTTTGTTTCCAATTCAAACTTTCTAATTCCTCCCCATGGTTTGATGCCTTGCAATCATGAAAGCAGTATTTTTTAAATGATAAAAGACATGTGTTTTGTAATATTTCACATCTATCTTATTAGTATTTGCTAATATTTTACGTTAAAGTTTATGTGATGTTACTTGTAGAATTGGGAAGTATGTCATATTGCGATCAGCTATAAGTTTTTTTTAATGCTTGTTGTGGTTTATTTTATTTCTCATCATGAGTATGTTCTTTCAGCATTTTGTAGTTAGGGAATCACTTTTCTCCTCCAAATCTAGATATAATATTGTGTTGTAGGAATGAGAAACCCTGAAATGTCTCCCTCTGCGCCTCATCAATTCCATCAACATTCACCTGACCAGAGATTCTATGCGCGAGGTTATAGTGGATCTGGTGGCCATGGTAGCCCAGCAATGCCCAGGCCTTTTCCTATGGATCAAAGAAGTCCTAATATGTGGGGTGGACCTAGAAGCCCATATGTCAACCACTTTCCCGGCCCTCCTCCAAGGGGGATGAACTCCCCCAGAGGCCCTTTTGTCAACCAATTCCCTAGCCAGCTACCAAGGGATATGAGCTCACCCAGCTTTGTCTCTGGACCAAGAGGTAATTCTTACCCCAATCAAACGCAAGACATGGTTAATCACCTCAGTCCAAGTCCTAGTCCTGGGTATCAAGGCAGTTCTAGTCCTGGTGGAGGCAGCCATGGTCATCGTGGCAATATGACTCCTAGTCCAAGATTTGGCTCGGGACGAGGTTTTGGTTCTCATGGTCATCGCTTTTCATCAGACGAATCATCTAGACCAGAACAGTTTTACAATCCATCCATGCTTGAAGATCCTTGGAAGGTTCTGCAACCTGGTATTTGGAGGCCAGTTGCTCCATTGAGAAGTTCTGCCAACTCTTCAGAATCTTGGATTTCGAAATTCAATTCGAAAAAAGCAAGAGTTTCAGATGCTTCTTCTGGCAGGTCAGGCTCTCAACCCAGCCTCGCCGAGTATCTCGCTGCTTCCTTCAACGAAGCAGCCAACAACACACCAGGTGAGTAA

mRNA sequence

ATGGCTGCATTTTCTTCCAGCAAGAAGAGAGGGAATCAGACTGTGTCTCATGATTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGCTTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGTTTATGTTCCATCAAATTTTCCAGGAATGAGAAACCCTGAAATGTCTCCCTCTGCGCCTCATCAATTCCATCAACATTCACCTGACCAGAGATTCTATGCGCGAGGTTATAGTGGATCTGGTGGCCATGGTAGCCCAGCAATGCCCAGGCCTTTTCCTATGGATCAAAGAAGTCCTAATATGTGGGGTGGACCTAGAAGCCCATATGTCAACCACTTTCCCGGCCCTCCTCCAAGGGGGATGAACTCCCCCAGAGGCCCTTTTGTCAACCAATTCCCTAGCCAGCTACCAAGGGATATGAGCTCACCCAGCTTTGTCTCTGGACCAAGAGGTAATTCTTACCCCAATCAAACGCAAGACATGGTTAATCACCTCAGTCCAAGTCCTAGTCCTGGGTATCAAGGCAGTTCTAGTCCTGGTGGAGGCAGCCATGGTCATCGTGGCAATATGACTCCTAGTCCAAGATTTGGCTCGGGACGAGGTTTTGGTTCTCATGGTCATCGCTTTTCATCAGACGAATCATCTAGACCAGAACAGTTTTACAATCCATCCATGCTTGAAGATCCTTGGAAGGTTCTGCAACCTGGTATTTGGAGGCCAGTTGCTCCATTGAGAAGTTCTGCCAACTCTTCAGAATCTTGGATTTCGAAATTCAATTCGAAAAAAGCAAGAGTTTCAGATGCTTCTTCTGGCAGGTCAGGCTCTCAACCCAGCCTCGCCGAGTATCTCGCTGCTTCCTTCAACGAAGCAGCCAACAACACACCAGGTGAGTAA

Coding sequence (CDS)

ATGGCTGCATTTTCTTCCAGCAAGAAGAGAGGGAATCAGACTGTGTCTCATGATTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGCTTATGTTCCTTCCCACCTCAATAGTTCTCCAGATGTTTATGTTCCATCAAATTTTCCAGGAATGAGAAACCCTGAAATGTCTCCCTCTGCGCCTCATCAATTCCATCAACATTCACCTGACCAGAGATTCTATGCGCGAGGTTATAGTGGATCTGGTGGCCATGGTAGCCCAGCAATGCCCAGGCCTTTTCCTATGGATCAAAGAAGTCCTAATATGTGGGGTGGACCTAGAAGCCCATATGTCAACCACTTTCCCGGCCCTCCTCCAAGGGGGATGAACTCCCCCAGAGGCCCTTTTGTCAACCAATTCCCTAGCCAGCTACCAAGGGATATGAGCTCACCCAGCTTTGTCTCTGGACCAAGAGGTAATTCTTACCCCAATCAAACGCAAGACATGGTTAATCACCTCAGTCCAAGTCCTAGTCCTGGGTATCAAGGCAGTTCTAGTCCTGGTGGAGGCAGCCATGGTCATCGTGGCAATATGACTCCTAGTCCAAGATTTGGCTCGGGACGAGGTTTTGGTTCTCATGGTCATCGCTTTTCATCAGACGAATCATCTAGACCAGAACAGTTTTACAATCCATCCATGCTTGAAGATCCTTGGAAGGTTCTGCAACCTGGTATTTGGAGGCCAGTTGCTCCATTGAGAAGTTCTGCCAACTCTTCAGAATCTTGGATTTCGAAATTCAATTCGAAAAAAGCAAGAGTTTCAGATGCTTCTTCTGGCAGGTCAGGCTCTCAACCCAGCCTCGCCGAGTATCTCGCTGCTTCCTTCAACGAAGCAGCCAACAACACACCAGGTGAGTAA

Protein sequence

MAAFSSSKKRGNQTVSHDYVPSHLNSSPDAYVPSHLNSSPDVYVPSNFPGMRNPEMSPSAPHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGPPPRGMNSPRGPFVNQFPSQLPRDMSSPSFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSPGGGSHGHRGNMTPSPRFGSGRGFGSHGHRFSSDESSRPEQFYNPSMLEDPWKVLQPGIWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE

Homology

[Close]

BLAST of Carg24037 vs. NCBI nr
Match: XP_023533680.1 (protein SICKLE [Cucurbita pepo subsp. pepo] >XP_023533681.1 protein SICKLE [Cucurbita pepo subsp. pepo] >XP_023533682.1 protein SICKLE [Cucurbita pepo subsp. pepo] >XP_023533683.1 protein SICKLE [Cucurbita pepo subsp. pepo] >XP_023533684.1 protein SICKLE [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.9 bits (1117), Expect = 2.2e-118
Identity = 283/298 (94.97%), Postives = 285/298 (95.64%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 60
           MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA
Sbjct: 65  MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 124

Query: 61  PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 120
           PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX
Sbjct: 125 PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSP 180
           XXXXXXXXXXXXXXXXXXXXXXXX FVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSP
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXSFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSP 244

Query: 181 GGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPGIWR 240
           GGGSHGHRGNMT      XXXXXXXXXXX     SSRPEQFYNPSMLEDPWKVLQPGIWR
Sbjct: 245 GGGSHGHRGNMTPSPRFGXXXXXXXXXXXFSSDESSRPEQFYNPSMLEDPWKVLQPGIWR 304

Query: 241 PVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE 299
           PVAPLRSSAN+SESWISKFN+KKARVSDASSGRS SQPSLAEYLAASFNEAANNTPGE
Sbjct: 305 PVAPLRSSANTSESWISKFNTKKARVSDASSGRSSSQPSLAEYLAASFNEAANNTPGE 362

[Close]

BLAST of Carg24037 vs. NCBI nr
Match: XP_022947202.1 (protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947203.1 protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947205.1 protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947206.1 protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947207.1 protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947208.1 protein SICKLE isoform X1 [Cucurbita moschata])

HSP 1 Score: 434.5 bits (1116), Expect = 2.9e-118
Identity = 284/298 (95.30%), Postives = 285/298 (95.64%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 60
           MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA
Sbjct: 65  MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 124

Query: 61  PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 120
           PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX
Sbjct: 125 PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQT DMVNHLSPSPSPGYQGSSSP
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTHDMVNHLSPSPSPGYQGSSSP 244

Query: 181 GGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPGIWR 240
           GGGSHGHRGNMT      XXXXXXXXXXX     SSRPEQFYNPSMLEDPWKVLQPGIWR
Sbjct: 245 GGGSHGHRGNMTPSPRFGXXXXXXXXXXXFSSDESSRPEQFYNPSMLEDPWKVLQPGIWR 304

Query: 241 PVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE 299
           PVAPLRSSAN SESWISKFN+KKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE
Sbjct: 305 PVAPLRSSANPSESWISKFNTKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE 362

[Close]

BLAST of Carg24037 vs. NCBI nr
Match: XP_022947209.1 (protein SICKLE isoform X2 [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 5.5e-117
Identity = 264/298 (88.59%), Postives = 265/298 (88.93%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 60
           MAAFSSSKKRGNQTVSHDYVPSHLNSSPD                    GMRNPEMSPSA
Sbjct: 65  MAAFSSSKKRGNQTVSHDYVPSHLNSSPD------------AYVPSNFPGMRNPEMSPSA 124

Query: 61  PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 120
           PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX
Sbjct: 125 PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQT DMVNHLSPSPSPGYQGSSSP
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTHDMVNHLSPSPSPGYQGSSSP 244

Query: 181 GGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPGIWR 240
           GGGSHGHRGNMT      XXXXXXXXXXX     SSRPEQFYNPSMLEDPWKVLQPGIWR
Sbjct: 245 GGGSHGHRGNMTPSPRFGXXXXXXXXXXXFSSDESSRPEQFYNPSMLEDPWKVLQPGIWR 304

Query: 241 PVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE 299
           PVAPLRSSAN SESWISKFN+KKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE
Sbjct: 305 PVAPLRSSANPSESWISKFNTKKARVSDASSGRSGSQPSLAEYLAASFNEAANNTPGE 350

[Close]

BLAST of Carg24037 vs. NCBI nr
Match: XP_023007497.1 (protein SICKLE isoform X1 [Cucurbita maxima] >XP_023007498.1 protein SICKLE isoform X1 [Cucurbita maxima] >XP_023007499.1 protein SICKLE isoform X1 [Cucurbita maxima])

HSP 1 Score: 353.6 bits (906), Expect = 6.6e-94
Identity = 246/306 (80.39%), Postives = 249/306 (81.37%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 60
           MAAFSSSKKRGNQTVSH YVPSHLNSSPD                    GMRNPEMSPSA
Sbjct: 70  MAAFSSSKKRGNQTVSHAYVPSHLNSSPD------------AYVPSNFPGMRNPEMSPSA 129

Query: 61  PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 120
           PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRS        XXXX
Sbjct: 130 PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSXXXXXXXXXXXX 189

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQG---- 180
           XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYP+QTQDMVNHLSPSPSPGYQG    
Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPSQTQDMVNHLSPSPSPGYQGXXXX 249

Query: 181 ----SSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWK 240
                    GG         XXXXXXXXXXXXXXXXXXX   SSRPEQFY+PSMLEDPWK
Sbjct: 250 XXXXXXXXXGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKSSRPEQFYDPSMLEDPWK 309

Query: 241 VLQPGIWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAA 299
           VLQPGIWRPVAPLRSSAN SESWISKFN+KKARV DASSGRSGSQPSLAEYLAASFNEAA
Sbjct: 310 VLQPGIWRPVAPLRSSANPSESWISKFNTKKARVLDASSGRSGSQPSLAEYLAASFNEAA 363

[Close]

BLAST of Carg24037 vs. NCBI nr
Match: XP_023007500.1 (protein SICKLE isoform X2 [Cucurbita maxima] >XP_023007501.1 protein SICKLE isoform X2 [Cucurbita maxima] >XP_023007502.1 protein SICKLE isoform X2 [Cucurbita maxima])

HSP 1 Score: 353.6 bits (906), Expect = 6.6e-94
Identity = 246/306 (80.39%), Postives = 249/306 (81.37%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSPSA 60
           MAAFSSSKKRGNQTVSH YVPSHLNSSPD                    GMRNPEMSPSA
Sbjct: 65  MAAFSSSKKRGNQTVSHAYVPSHLNSSPD------------AYVPSNFPGMRNPEMSPSA 124

Query: 61  PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGXXXX 120
           PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRS        XXXX
Sbjct: 125 PHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSXXXXXXXXXXXX 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQG---- 180
           XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYP+QTQDMVNHLSPSPSPGYQG    
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPSQTQDMVNHLSPSPSPGYQGXXXX 244

Query: 181 ----SSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWK 240
                    GG         XXXXXXXXXXXXXXXXXXX   SSRPEQFY+PSMLEDPWK
Sbjct: 245 XXXXXXXXXGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKSSRPEQFYDPSMLEDPWK 304

Query: 241 VLQPGIWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAA 299
           VLQPGIWRPVAPLRSSAN SESWISKFN+KKARV DASSGRSGSQPSLAEYLAASFNEAA
Sbjct: 305 VLQPGIWRPVAPLRSSANPSESWISKFNTKKARVLDASSGRSGSQPSLAEYLAASFNEAA 358

[Close]

BLAST of Carg24037 vs. TAIR10
Match: AT4G24500.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 83/328 (25.30%), Postives = 113/328 (34.45%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYV--PSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSP 60
           MAA+SS KK  N+T    Y+  PSH  SSP                         P+  P
Sbjct: 66  MAAYSSFKK--NKTPKQQYISSPSHQGSSPVP-----------------------PQFPP 125

Query: 61  SAP-----HQFHQHSPDQRFYARGYSGSG-GHGSPA------------------------ 120
           S P      ++   +    F+A  Y   G  H SP+                        
Sbjct: 126 SVPPGSLCSEYQAQTNHGGFHAAHYEPRGMAHLSPSHRGPPAGWNNNFRPPPVNHSGPPQ 185

Query: 121 -MPRPFPMDQRSPNMWG---GPRSPYVNHFPGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            +PRPFP  Q  PNM     G R  Y N  P                             
Sbjct: 186 WVPRPFPFSQEMPNMGNNRFGGRGSYNNTPPQFSNYGRQNANWG---------------- 245

Query: 181 XFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSPGGGSHGHRGNMTXXXXXXXXXXXX 240
                  GN+YPN  +        + S G  G   P                        
Sbjct: 246 -------GNTYPNSGRGRSRGRGMNTSFGRDGGRRP------------------------ 305

Query: 241 XXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPGIWRPVAPLRSSANSSESWISK-FNSKK 292
                         E+FY+ SM EDPWK L+P +W+  +   SS+++ ++W+ K    KK
Sbjct: 306 ---------MEPGAERFYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLPKSIAPKK 312

[Close]

BLAST of Carg24037 vs. Swiss-Prot
Match: sp|Q9SB47|SIC_ARATH (Protein SICKLE OS=Arabidopsis thaliana OX=3702 GN=SIC PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-07
Identity = 83/328 (25.30%), Postives = 113/328 (34.45%), Query Frame = 0


Query: 1   MAAFSSSKKRGNQTVSHDYV--PSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMSP 60
           MAA+SS KK  N+T    Y+  PSH  SSP                         P+  P
Sbjct: 66  MAAYSSFKK--NKTPKQQYISSPSHQGSSPVP-----------------------PQFPP 125

Query: 61  SAP-----HQFHQHSPDQRFYARGYSGSG-GHGSPA------------------------ 120
           S P      ++   +    F+A  Y   G  H SP+                        
Sbjct: 126 SVPPGSLCSEYQAQTNHGGFHAAHYEPRGMAHLSPSHRGPPAGWNNNFRPPPVNHSGPPQ 185

Query: 121 -MPRPFPMDQRSPNMWG---GPRSPYVNHFPGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            +PRPFP  Q  PNM     G R  Y N  P                             
Sbjct: 186 WVPRPFPFSQEMPNMGNNRFGGRGSYNNTPPQFSNYGRQNANWG---------------- 245

Query: 181 XFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGSSSPGGGSHGHRGNMTXXXXXXXXXXXX 240
                  GN+YPN  +        + S G  G   P                        
Sbjct: 246 -------GNTYPNSGRGRSRGRGMNTSFGRDGGRRP------------------------ 305

Query: 241 XXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPGIWRPVAPLRSSANSSESWISK-FNSKK 292
                         E+FY+ SM EDPWK L+P +W+  +   SS+++ ++W+ K    KK
Sbjct: 306 ---------MEPGAERFYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLPKSIAPKK 312

[Close]

BLAST of Carg24037 vs. TrEMBL
Match: tr|A0A1S3CA20|A0A1S3CA20_CUCME (uncharacterized protein LOC103498353 OS=Cucumis melo OX=3656 GN=LOC103498353 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 156/301 (51.83%), Postives = 177/301 (58.80%), Query Frame = 0


Query: 1   MAAFSSSKKRG---NQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMS 60
           MAAFS+SKK+G   NQ VS  +VP H N+S                      G+RNPEMS
Sbjct: 65  MAAFSTSKKKGKIENQPVSDTFVPYHHNTS------------STTYLPPTFPGLRNPEMS 124

Query: 61  PSAPHQFHQHSPDQR-FYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPG 120
           PS+ HQFHQ+SPDQR FYARG S +GGHGSP MPRP+ ++Q  P+MW GPR P+VN FP 
Sbjct: 125 PSSTHQFHQYSPDQRTFYARGDSEAGGHGSPGMPRPYAVNQGDPHMWRGPRRPFVNQFP- 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQG 180
                                         VSGPRGNSY N TQD   + S SP+PG+ G
Sbjct: 185 ------------------THPPREMNSSSHVSGPRGNSYTNPTQDRAKYRSSSPNPGFHG 244

Query: 181 SSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQP 240
           S SPG GSHGH GNMT                      S  PEQFYN SMLEDPWKVLQP
Sbjct: 245 SLSPGRGSHGHHGNMTPSPRFGYGRGTGFHGRHSLLDKSG-PEQFYNVSMLEDPWKVLQP 304

Query: 241 GIWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGS-QPSLAEYLAASFNEAANNT 297
            IW  +    +SA  SESWISKF +KKARVSD+SSGRS S QPSLAEYLAASF EA  + 
Sbjct: 305 CIWTTIDSSSNSAKPSESWISKFGTKKARVSDSSSGRSSSQQPSLAEYLAASFKEAIEDA 333

[Close]

BLAST of Carg24037 vs. TrEMBL
Match: tr|Q6E437|Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo OX=3656 GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 156/301 (51.83%), Postives = 177/301 (58.80%), Query Frame = 0


Query: 1   MAAFSSSKKRG---NQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMS 60
           MAAFS+SKK+G   NQ VS  +VP H N+S                      G+RNPEMS
Sbjct: 298 MAAFSTSKKKGKIENQPVSDTFVPYHHNTS------------STTYLPPTFPGLRNPEMS 357

Query: 61  PSAPHQFHQHSPDQR-FYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPG 120
           PS+ HQFHQ+SPDQR FYARG S +GGHGSP MPRP+ ++Q  P+MW GPR P+VN FP 
Sbjct: 358 PSSTHQFHQYSPDQRTFYARGDSEAGGHGSPGMPRPYAVNQGDPHMWRGPRRPFVNQFP- 417

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQG 180
                                         VSGPRGNSY N TQD   + S SP+PG+ G
Sbjct: 418 ------------------THPPREMNSSSHVSGPRGNSYTNPTQDRAKYRSSSPNPGFHG 477

Query: 181 SSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQP 240
           S SPG GSHGH GNMT                      S  PEQFYN SMLEDPWKVLQP
Sbjct: 478 SLSPGRGSHGHHGNMTPSPRFGYGRGTGFHGRHSLLDKSG-PEQFYNVSMLEDPWKVLQP 537

Query: 241 GIWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGS-QPSLAEYLAASFNEAANNT 297
            IW  +    +SA  SESWISKF +KKARVSD+SSGRS S QPSLAEYLAASF EA  + 
Sbjct: 538 CIWTTIDSSSNSAKPSESWISKFGTKKARVSDSSSGRSSSQQPSLAEYLAASFKEAIEDA 566

[Close]

BLAST of Carg24037 vs. TrEMBL
Match: tr|A0A1S3B5C6|A0A1S3B5C6_CUCME (uncharacterized protein LOC103486001 OS=Cucumis melo OX=3656 GN=LOC103486001 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 168/301 (55.81%), Postives = 192/301 (63.79%), Query Frame = 0


Query: 1   MAAFSSSKKRG---NQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMS 60
           MAAFS+SKK+G   NQ VS ++VP H N+S                      G+RNPEMS
Sbjct: 65  MAAFSTSKKKGKIENQLVSDNFVPYHHNTS-----------------SPTFPGLRNPEMS 124

Query: 61  PSAPHQFHQHSPDQR-FYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPG 120
            ++ HQFHQ SPD+R FYARG S +GGHGSP MPRP+ +DQ  P+MW G + P+VN +P 
Sbjct: 125 SASTHQFHQCSPDRRMFYARGDSEAGGHGSPGMPRPYAVDQGDPHMWRGSKRPFVNQYP- 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQG 180
                                         VS PRGNSY N TQD  N+ S SP+PG+ G
Sbjct: 185 ------------------THPPREMNSPSHVSRPRGNSYTNPTQDRANYRSSSPNPGFLG 244

Query: 181 SSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQP 240
           S SPG GSHGH GNMT     XXXXXXXXXXXXXXXXX   PEQFYN SMLEDPWKVLQP
Sbjct: 245 SFSPGRGSHGHHGNMTPSPRFXXXXXXXXXXXXXXXXXXXGPEQFYNVSMLEDPWKVLQP 304

Query: 241 GIWRPVAPLRSSANSSESWIS-KFNSKKARVSDASSGRSGSQPSLAEYLAASFNEAANNT 297
            IW  +AP  +S   SESWIS KF +KKARVSD+SSGRS SQPSLAEYLAASF EA  + 
Sbjct: 305 CIWTTIAPSSNSTEPSESWISTKFGTKKARVSDSSSGRSNSQPSLAEYLAASFKEAIEDV 329

[Close]

BLAST of Carg24037 vs. TrEMBL
Match: tr|A0A0A0LQW8|A0A0A0LQW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435470 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 132/300 (44.00%), Postives = 154/300 (51.33%), Query Frame = 0


Query: 1   MAAFSSSKKRG---NQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMS 60
           MAAFS+SKK+G   NQ VS ++VP H N+S                              
Sbjct: 65  MAAFSTSKKKGKIENQPVSDNFVPYHHNTS------------------------STTYFP 124

Query: 61  PSAPHQFHQHSPDQRFYARGYSGSGGHGSPAMPRPFPMDQRSPNMWGGPRSPYVNHFPGX 120
           P+ P               G S +GGHG P MPRP+ ++Q   +MW GPR P+VN FP  
Sbjct: 125 PTFP---------------GDSEAGGHGRPGMPRPYAVNQGDLHMWRGPRGPFVNQFP-- 184

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPGYQGS 180
                                        VSGPRGN Y N TQ+  N+ S SP+PG++GS
Sbjct: 185 -----------------TQPPREMNSPSHVSGPRGNPYTNPTQNRANYRSSSPNPGFRGS 244

Query: 181 SSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKVLQPG 240
            SPG GS+GH GNMT                      S  PEQFYN SMLEDPWKVLQP 
Sbjct: 245 FSPGRGSYGHHGNMTPSPRFGYGRATGSHGRHSSSDKSG-PEQFYNISMLEDPWKVLQPC 304

Query: 241 IWRPVAPLRSSANSSESWISKFNSKKARVSDASSGRSGS-QPSLAEYLAASFNEAANNTP 297
           IW  +APL +SA  SE WISKF +KKARVSD+SS RS S QPSLAEYLAASF EA    P
Sbjct: 305 IWTTIAPLSNSAKPSEYWISKFGTKKARVSDSSSSRSSSQQPSLAEYLAASFKEAIEEAP 305

[Close]

BLAST of Carg24037 vs. TrEMBL
Match: tr|A0A2N9GDL0|A0A2N9GDL0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15694 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-20
Identity = 123/305 (40.33%), Postives = 148/305 (48.52%), Query Frame = 0


Query: 1   MAAFSSSKKR---GNQTVSHDYVPSHLNSSPDXXXXXXXXXXXXXXXXXXXXGMRNPEMS 60
           M+AFS SKKR   GN     D+   +   SP                     G RNP M+
Sbjct: 63  MSAFSDSKKRSKAGNPIRQDDFTSPNNYGSP------------MAQFSPSLPGPRNPGMT 122

Query: 61  PSAPHQF-HQHSPDQRFY-ARG-YSGSGGHGSP-AMPRPFPMDQRSPNMWGGPRSPYVNH 120
           P   HQ  H  SP+Q  Y A+G Y  SG H SP  M  PF +  + P +W  P SP    
Sbjct: 123 PPPAHQINHSSSPNQIMYRAQGPYYSSGPHRSPIGMAGPFSVQPQIPEVWNRPMSPTGYR 182

Query: 121 FPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSGPRGNSYPNQTQDMVNHLSPSPSPG 180
           FP                                 GPRG+ + N  Q   + +S      
Sbjct: 183 FPSNPSRGGYLPSPGF-------------------GPRGSPHLNTWQGRGHRVS------ 242

Query: 181 YQGSSSPGGGSHGHRGNMTXXXXXXXXXXXXXXXXXXXXXXSSRPEQFYNPSMLEDPWKV 240
               S              XXXXXXXXXXXXXXXXXXX    S PEQFYN SM EDPWK 
Sbjct: 243 ---HSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRLSAPEQFYNESMFEDPWKF 302

Query: 241 LQPGIWRPVAPLRSSAN---SSESWISKF-NSKKARVSDASSGRSGSQPSLAEYLAASFN 295
           L+P +WR V+   +S N   SS+SWI+K  N+KKA+VS+ S+ +S SQPSLAEYLAASFN
Sbjct: 303 LKPVVWRSVSAFVNSLNTPDSSKSWITKSPNTKKAKVSEPSN-KSSSQPSLAEYLAASFN 326

The following BLAST results are available for this feature:

BLAST of Carg24037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533680.1	2.2e-118	94.97	protein SICKLE [Cucurbita pepo subsp. pepo] >XP_023533681.1 protein SICKLE [Cucu...	[more]
XP_022947202.1	2.9e-118	95.30	protein SICKLE isoform X1 [Cucurbita moschata] >XP_022947203.1 protein SICKLE is...	[more]
XP_022947209.1	5.5e-117	88.59	protein SICKLE isoform X2 [Cucurbita moschata]	[more]
XP_023007497.1	6.6e-94	80.39	protein SICKLE isoform X1 [Cucurbita maxima] >XP_023007498.1 protein SICKLE isof...	[more]
XP_023007500.1	6.6e-94	80.39	protein SICKLE isoform X2 [Cucurbita maxima] >XP_023007501.1 protein SICKLE isof...	[more]

BLAST of Carg24037 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24500.1	2.3e-08	25.30	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Carg24037 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SB47\|SIC_ARATH	4.2e-07	25.30	Protein SICKLE OS=Arabidopsis thaliana OX=3702 GN=SIC PE=1 SV=1	[more]

BLAST of Carg24037 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA20\|A0A1S3CA20_CUCME	4.2e-65	51.83	uncharacterized protein LOC103498353 OS=Cucumis melo OX=3656 GN=LOC103498353 PE=...	[more]
tr\|Q6E437\|Q6E437_CUCME	4.2e-65	51.83	ACT11D09.5 OS=Cucumis melo OX=3656 GN=ACT11D0.5 PE=4 SV=1	[more]
tr\|A0A1S3B5C6\|A0A1S3B5C6_CUCME	3.0e-63	55.81	uncharacterized protein LOC103486001 OS=Cucumis melo OX=3656 GN=LOC103486001 PE=...	[more]
tr\|A0A0A0LQW8\|A0A0A0LQW8_CUCSA	2.3e-47	44.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435470 PE=4 SV=1	[more]
tr\|A0A2N9GDL0\|A0A2N9GDL0_FAGSY	7.1e-20	40.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15694 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:1903730	regulation of phosphatidate phosphatase activity
GO:0035196	production of miRNAs involved in gene silencing by miRNA
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR039292	SICKLE
IPR028265	TTDN1/SICKLE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:1903730	regulation of phosphatidate phosphatase activity
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24037-RA	Carg24037-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028265	TTDN1/Protein SICKLE	PFAM	PF15502	MPLKIP	coord: 201..237 e-value: 2.0E-7 score: 31.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..278
IPR039292	Protein SICKLE	PANTHER	PTHR36054	FAMILY NOT NAMED	coord: 166..295 coord: 1..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24037	Cla012981	Watermelon (97103) v1	carwmB1054
Carg24037	Csa2G435470	Cucumber (Chinese Long) v2	carcuB1067
Carg24037	MELO3C021835	Melon (DHL92) v3.5.1	carmeB1022
Carg24037	ClCG09G016810	Watermelon (Charleston Gray)	carwcgB1025
Carg24037	CSPI02G27580	Wild cucumber (PI 183967)	carcpiB1089
Carg24037	Cucsa.318870	Cucumber (Gy14) v1	carcgyB1170
Carg24037	CmaCh02G004650	Cucurbita maxima (Rimu)	carcmaB1460
Carg24037	CmoCh02G004720	Cucurbita moschata (Rifu)	carcmoB1415
Carg24037	Lsi10G002440	Bottle gourd (USVL1VR-Ls)	carlsiB961
Carg24037	Cp4.1LG05g12050	Cucurbita pepo (Zucchini)	carcpeB1469
Carg24037	CsGy2G027030	Cucumber (Gy14) v2	carcgybB1036
Carg24037	MELO3C021835.2	Melon (DHL92) v3.6.1	carmedB1034
Carg24037	CsaV3_2G036230	Cucumber (Chinese Long) v3	carcucB1100
Carg24037	Cla97C09G178400	Watermelon (97103) v2	carwmbB1112
Carg24037	Bhi10G001289	Wax gourd	carwgoB1238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24037	Cucurbita maxima (Rimu)	carcmaB1459
Carg24037	Cucurbita moschata (Rifu)	carcmoB1414
Carg24037	Cucurbita pepo (Zucchini)	carcpeB1468