Carg24026 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24026
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At5g14770, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_166 : 28685 .. 34066 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATGCCGGGAACCTCCCCTCTCTCCCTCCATTTCCGTTCAGTAGAGTTCTTAGTCCATCGCTGAACAACAACCAGCTTCTTCCACCGATTCTCGAGCTTCTTATTCTCGATGTTCAGATAAGAATTCATATGCAATATCAATGGCGAAGAGATCAGTAGCATTCCCGTTCTCGCGTCTTCTCCTCAGTCATGTCTTCAAGAACCCTATGGACGCCATATTCCATGGATTTCCCCCTTCCTCTCGAAACCCGAATCTCTCTCTTCTAGGCGCACTCTTCTGTTCCACTTCCTCGTCCAGAGACGTACGGAACCTTCTTGCCGAGTTGAAGATTGAGAAGCAGTTCATGGAATCGGTTGCAATTTTCCCCTCCAAGTATTTCAATTTCGTTTTTACTGTTCTGCTGCCTCACAAGCGTTCTGTTTCTTTTCTACTTTCTAGAATGGAAAATTTGATTCATTCTCGTCATAATTTGATCTTCTATCCATTTAGTTGCTCTGCTGTTTGATGCACATGTTATCCGTTTGGGGATTTACTGCAACAAAGTAGTCTAGTTCTTAATAATTTTCAAATTCCAGATGGTAATTGAATGTTGCTGGAGAAGAATCTGCCAAATTTTGGCCAATGTTGATTAATTGTGAACTAAGTTTAACAAGGGATATCTTGTGCAGTTCCAGTATTGTTTTGGGATTATTGTAGGGTAAAAAATTAATTCCTCAAAAAAAGTTTTATAATTACTTGAGGTATTATGATATACATGTCGTTGATATAGATCATAAATCCTTTTTCTTTTTTATGGAAAAAAATATGTTTCGTTTGTATGTTCGTGGATGCTTGAATATCTCAAGCTAAGCTTTGAATTTGTATTTCTTTCTGATGTTATAGTTTCCCCCTAAAAAATTATTTTCATAAAATAACCCAGATTTATAAACTAACTCAAAGTTGTTTCATAACATCGACAGGTTTCAGATGAGCAATCGATTGACGTGAATATAACAAGCAATGTTAGAGAGGTATCAAACACCCTTCTTCTAATTATTATACTTGGAGAAATGTTTACTGTTTATCAGAACTTTATGTAATATGTTGATCCTACTGTTAACAGAATGGGCTCGAAGAAGCACTTTCTTTGTATGAGGAAATGGTTGGAAGTGGAATCTTCCCTGATGTAGTTACTTATAGTTCCATTTTATATGGTCTTTGTAAGCATGGGAAGTTGTCTGAAGGAAAACTGCTTTTGAGGGAGATGGAAAAGATGGGCATGCATCCTAATGATATCTCATATTCTATCCTTCTCGACGCATTGTTTAAGGCTCGGAAAATTAAAGAAGCATTAATGACACTCGGTTGTATGATTGTGCGTGGGAATAGCTTTGATCTGATAGCATGTACTGTTTTGATTGATGGATTCTTTAAGAATGGAGGAATCAAAGAGGCCGAATATATATTCAACAACTTATATCAACTTAATCTAGTTCCGAACTCTATCACATATTCTGTTTTAATCGATGGACGTTGCAAGTTAGGAGACATAAATGGTGCTGAATCTTCTCTGCATGAGATGGAGGAGAAAGATTGTGTTCCTAATGTCATCACATATTCTTCTATGATCAATGGTTATGTGAAGAAAGGAATGCTTTGGAATGCATTTAATGTATTGAGAAAGATGGTACACAAAAATGTGATGCCAAATATATTTACTTATGCAATTCTACTTGATGGTTCTTTCAAAGCTGGTTGGCAAGATATTGCCCTTGATCTTTACAACAAAATGAAACAGAGAGGATTGAAGGATAATGTTCTTATACTGGATGCTTTTGTGAACAACTTGAAAAGAAGTGGAAGGATGGAAGAAGCTGAGGATTTAATTGCAAAAATGGAATCAGGAGGTTTAATACCCGACCTTGTGAACTACACAAATTTGATGGATGGGTTCTTGAAGTCTGGGAAAGAGTCATCTGCTCTTAACCTGGCTCAGGAATTGATATCCAAGAATGTAGTGTTTGATGTTGTTGCTTTTAATGTCCTAATTAATGGTTTGTTTAAGCTTGGGAAATGTGATACTGAATCAATTTATAAAGTAATGGGGGATTTGGGGTTATCTCCCGACTCAGCAACATACAACACCATGATAAATGGTAATTTTAAGAAGGGGAACTGGGAAACTGCCGTGCAATTGTGGAATGAGATGAAGAGCAGAAAGTTGGTACCAAGTGCAATCACATGTAACCTTATGATAAACGGACTTTGTGAAGCTGGGAGGATAGAAAATGCAATCAATATTGTGAAAGAAATGGTTGTGATGGGTTTGTACCCCACATTAATTACTTATAGAATTCTACTCAATGCATCCTCAAAGAGTAGAAGAGCTGACACTATTTTACAGGTCCATAAGTTGCTTGTGGATTTGCACCTTGAAGTCAATAAGGATATTTACAATATTCTCATAAGCAACTTGTGCAAACTAGGAATGACTAGGAAGGCAACTGCAGTGCTGAAAGACATGGAGAAAAGAGGAATTTTAGCTGACACAATAACATACAATGCCCTGATACAAGGATACTGCATTAGCAGCCATCTGAAGAGAGCTTTTATAACATTTTCTACTATGTTGTCTGAAGGAGTTTCTCCAAATATTGAAACTTACAATCTCCTTCTAGGTGGTCTTTCTAAAGCTGGGTTAATACGCGAGGCAGATGACCTACTCAATGAGATAAAGAAACGGGGCTTAGTTCCCAATGCTTGTACCTATGAAACTCTGATGTGTGGCCATTGCAAGGTTGGAAATACAAAGGAAGCTTTGAGATTCTACTGTGAGATGGTAATTAAGGGATTTATTCCAAGAGCGGGCGCCTATAACACGCTTATTGGTTATTTTTCCAAGATGGGAAAAATGAGCCAAGCCAAGGAGCTAATGAAAGAGATGCAGAGAAAAGGTGTATCCCCCACTTCTTCCACATATGACATACTGATTTGTGGATGGTGCAAACTGTCAAAAATGCCAGAACTGGACAGGACATCGAAAGTATCATACCGGGCTGAGGCAAAAAGATTACTCAATGAGATGAATGATCGAGGATTTGTTCCCTGTGAAAGTACTCTTTTTTGCATCGGCTCTACATTTGCTGCACCTGGGAAGAAGGCTGATGCTCGTATGCTATTGAAGAGCACATTCAGGAGAAAGCGTGAATGAGGTATGTTTATTTTAGGGGCTAAATTCCTTCAAATAGTCAGTATTGTCTTTACTCTTAGATTTATCTTATGATCTCTTAGTGCTATAGCATTGCTAGCAGCGTTAAAGGTTACATTGTCTTAATTGGATGAATTAATATTAAAACTATTAATAATTTCAATAATAACTCAGAAATGCCCATAATTTGATTCACATCCAGGTGAAGTTCAATGTCTTTTGCCTTTTCATCATCATCCAGGCAATGTTACTCATCAAGTCTCCATCTCATTTGTGCAACCCTCTCAATTATCTATGATCATCACCCATCATTATTGAGTATATCTTTCCTTCCCCCCCCCCCCCCTGTGGTAATGCCATTTTGAGGTGTCATCATTCTTGAGACTAACTTGGGTTTTGTTCTATTGTATCTCTCCATTTCTAATTCCAGGGCTTACTGGGGTGAGTTGAAGAAGTTGAAACTTCACATATAGACGAGAGCTACAGTTGCATGCGCTCGGGAATCTGCTGGTATACTCAGGACGTGTTAATATGTTGGTTCAGAAAGTTAAAGTTCTTGAAAGGTAGTTGGTCACAAAAATTTCATATGGTAATATTTCTTAAAAGTTGCATAGGAGTTTGCTGGATGTATATTTTTATTCATTCATTTTTACAGGAACTGTTTGAAAGTGGGAAAGATGAAAAACGGCGAAATAGAATTGTGCATTCAAAAAAGTGGCGAGAATACTTCTTGTATGGTCTTCTTTGCTTACAATGCATGAGATTCAAGGCGTTTCCAAAGCATTTCATGGGAGCTTCAAGGTGAGTAGTTTTGTTTCTCTTCATGCTTCTCTATTACATGCTCAACATCATTGAGTACACTCATCATTGGTAGCCTGAATTTCAACGTTTCTACATCTTTTTTTTTTTTTTCAAAAGAAAGACCGTGAAAAGAATATTATGTTTTGATTCTCATGTTATTCACCTGAAAGATAAGACTTCCTAAGTTTAACCTTTTTCGTCCTGACTCCATCTCAACTAAAACAAAACTTTGCACAGTTCTCCAGCATCTGCCCTCTAGAGTTGTGTTATTTTCAGTTGTCATATATTTGTTGCCCAAGACTTGGGCAGGCAGTCCATGCTTTTATTGTTGACATTAGCGGCATAAGGTTTAGTTACTCCATTAAGTCTCTTTTAATTTATCCTTTTCATAGTTTGCATTTTTCAATCTTAGTGATGGCATAAGGTTGAAATTAATACAAAGCTCTGTGTTGATTGTTGAGCTTATTTTTAGAGCACCCGGAAAGCGTTATCTTAAAATGTCTTAGAACCGAGGAAAAACGATATTTTCTTGTCAATTTTCAGGAAAAGGATGTCTGGAATTATAATGCTTTTGGGTTTAAGAACTATTTACTCTCACGGCCGAACTTCCTAATAATTCTTATTGAATGATCAACGAATGAGTTTATAGACATCACAAAGGAAACAACTTAAAGAATAAGACAACATAACAGAAATTACCAAGTGACCAAATAAACTAAAGTTGCATAATAGAAAGAATGATGTTGTCATCATTTGCTAATCATTAGCTCACAGAAGGTTCTAGAATTTCCAATGCTAGCTCACCCAGCCGGTCGAGCTGAATTTCTAAATGCCATGTGTTACGAACTTAACATATCTCTCTCATGCACACATTTTGAGATCTCTGGACATCGATCATTGTTTATTGACTTGCAGGGACAGTTTGCTTCGAGTTGGTTGGAGAAAGTCTGAATTCACTGGGCATAACAGATTTTCTGAAACTGTACAAGCTTAATGAGAGCATGTCATGGTGATGGAAGGAAGGATATGGATGAATAGTAAACAGAAAGTGAAACTCCAGGCAGATATTTGGAGTTTTCTGAATGTTGATGCAGAATTGTGGTTGCGTTGAAGTGGCAAAAATTGAGGTCTATGTTGATATAATTTAGAGCTCTCTTTCAAGTTGGCTACAAGAAAGGGAAAGGGATTTGTAATCTCTCTTATATTTGGGTACTTTCGACAAAACATTGGTTTGCTCCGCATCTTCTGACAAATTGGTTCAACATTTGTGAGATTTCACATCGGTTAGAGAGAGGAACAAAGTGTTTTTTGTACGAGTGTGGAAATCTCTCTCTAGCAGACGCTTTTTAAAACCGTGAAGTTGACAGTAATACGTAACAGGCCAAAACAAA

mRNA sequence

GCAATGCCGGGAACCTCCCCTCTCTCCCTCCATTTCCGTTCAGTAGAGTTCTTAGTCCATCGCTGAACAACAACCAGCTTCTTCCACCGATTCTCGAGCTTCTTATTCTCGATGTTCAGATAAGAATTCATATGCAATATCAATGGCGAAGAGATCAGTAGCATTCCCGTTCTCGCGTCTTCTCCTCAGTCATGTCTTCAAGAACCCTATGGACGCCATATTCCATGGATTTCCCCCTTCCTCTCGAAACCCGAATCTCTCTCTTCTAGGCGCACTCTTCTGTTCCACTTCCTCGTCCAGAGACGTACGGAACCTTCTTGCCGAGTTGAAGATTGAGAAGCAGTTCATGGAATCGGTTTCAGATGAGCAATCGATTGACGTGAATATAACAAGCAATGTTAGAGAGAATGGGCTCGAAGAAGCACTTTCTTTGTATGAGGAAATGGTTGGAAGTGGAATCTTCCCTGATGTAGTTACTTATAGTTCCATTTTATATGGTCTTTGTAAGCATGGGAAGTTGTCTGAAGGAAAACTGCTTTTGAGGGAGATGGAAAAGATGGGCATGCATCCTAATGATATCTCATATTCTATCCTTCTCGACGCATTGTTTAAGGCTCGGAAAATTAAAGAAGCATTAATGACACTCGGTTGTATGATTGTGCGTGGGAATAGCTTTGATCTGATAGCATGTACTGTTTTGATTGATGGATTCTTTAAGAATGGAGGAATCAAAGAGGCCGAATATATATTCAACAACTTATATCAACTTAATCTAGTTCCGAACTCTATCACATATTCTGTTTTAATCGATGGACGTTGCAAGTTAGGAGACATAAATGGTGCTGAATCTTCTCTGCATGAGATGGAGGAGAAAGATTGTGTTCCTAATGTCATCACATATTCTTCTATGATCAATGGTTATGTGAAGAAAGGAATGCTTTGGAATGCATTTAATGTATTGAGAAAGATGGTACACAAAAATGTGATGCCAAATATATTTACTTATGCAATTCTACTTGATGGTTCTTTCAAAGCTGGTTGGCAAGATATTGCCCTTGATCTTTACAACAAAATGAAACAGAGAGGATTGAAGGATAATGTTCTTATACTGGATGCTTTTGTGAACAACTTGAAAAGAAGTGGAAGGATGGAAGAAGCTGAGGATTTAATTGCAAAAATGGAATCAGGAGGTTTAATACCCGACCTTGTGAACTACACAAATTTGATGGATGGGTTCTTGAAGTCTGGGAAAGAGTCATCTGCTCTTAACCTGGCTCAGGAATTGATATCCAAGAATGTAGTGTTTGATGTTGTTGCTTTTAATGTCCTAATTAATGGTTTGTTTAAGCTTGGGAAATGTGATACTGAATCAATTTATAAAGTAATGGGGGATTTGGGGTTATCTCCCGACTCAGCAACATACAACACCATGATAAATGGTAATTTTAAGAAGGGGAACTGGGAAACTGCCGTGCAATTGTGGAATGAGATGAAGAGCAGAAAGTTGGTACCAAGTGCAATCACATGTAACCTTATGATAAACGGACTTTGTGAAGCTGGGAGGATAGAAAATGCAATCAATATTGTGAAAGAAATGGTTGTGATGGGTTTGTACCCCACATTAATTACTTATAGAATTCTACTCAATGCATCCTCAAAGAGTAGAAGAGCTGACACTATTTTACAGGTCCATAAGTTGCTTGTGGATTTGCACCTTGAAGTCAATAAGGATATTTACAATATTCTCATAAGCAACTTGTGCAAACTAGGAATGACTAGGAAGGCAACTGCAGTGCTGAAAGACATGGAGAAAAGAGGAATTTTAGCTGACACAATAACATACAATGCCCTGATACAAGGATACTGCATTAGCAGCCATCTGAAGAGAGCTTTTATAACATTTTCTACTATGTTGTCTGAAGGAGTTTCTCCAAATATTGAAACTTACAATCTCCTTCTAGGTGGTCTTTCTAAAGCTGGGTTAATACGCGAGGCAGATGACCTACTCAATGAGATAAAGAAACGGGGCTTAGTTCCCAATGCTTGTACCTATGAAACTCTGATGTGTGGCCATTGCAAGGTTGGAAATACAAAGGAAGCTTTGAGATTCTACTGTGAGATGGTAATTAAGGGATTTATTCCAAGAGCGGGCGCCTATAACACGCTTATTGGTTATTTTTCCAAGATGGGAAAAATGAGCCAAGCCAAGGAGCTAATGAAAGAGATGCAGAGAAAAGGTGTATCCCCCACTTCTTCCACATATGACATACTGATTTGTGGATGGTGCAAACTGTCAAAAATGCCAGAACTGGACAGGACATCGAAAGTATCATACCGGGCTGAGGCAAAAAGATTACTCAATGAGATGAATGATCGAGGATTTGTTCCCTGTGAAAGAGAAAGCGTGAATGAGGAACTGTTTGAAAGTGGGAAAGATGAAAAACGGCGAAATAGAATTGTGCATTCAAAAAAGTGGCGAGAATACTTCTTGTATGGTCTTCTTTGCTTACAATGCATGAGATTCAAGGCGTTTCCAAAGCATTTCATGGGAGCTTCAAGGGACAGTTTGCTTCGAGTTGGTTGGAGAAAGTCTGAATTCACTGGGCATAACAGATTTTCTGAAACTGTACAAGCTTAATGAGAGCATGTCATGGTGATGGAAGGAAGGATATGGATGAATAGTAAACAGAAAGTGAAACTCCAGGCAGATATTTGGAGTTTTCTGAATGTTGATGCAGAATTGTGGTTGCGTTGAAGTGGCAAAAATTGAGGTCTATGTTGATATAATTTAGAGCTCTCTTTCAAGTTGGCTACAAGAAAGGGAAAGGGATTTGTAATCTCTCTTATATTTGGGTACTTTCGACAAAACATTGGTTTGCTCCGCATCTTCTGACAAATTGGTTCAACATTTGTGAGATTTCACATCGGTTAGAGAGAGGAACAAAGTGTTTTTTGTACGAGTGTGGAAATCTCTCTCTAGCAGACGCTTTTTAAAACCGTGAAGTTGACAGTAATACGTAACAGGCCAAAACAAA

Coding sequence (CDS)

ATGGCGAAGAGATCAGTAGCATTCCCGTTCTCGCGTCTTCTCCTCAGTCATGTCTTCAAGAACCCTATGGACGCCATATTCCATGGATTTCCCCCTTCCTCTCGAAACCCGAATCTCTCTCTTCTAGGCGCACTCTTCTGTTCCACTTCCTCGTCCAGAGACGTACGGAACCTTCTTGCCGAGTTGAAGATTGAGAAGCAGTTCATGGAATCGGTTTCAGATGAGCAATCGATTGACGTGAATATAACAAGCAATGTTAGAGAGAATGGGCTCGAAGAAGCACTTTCTTTGTATGAGGAAATGGTTGGAAGTGGAATCTTCCCTGATGTAGTTACTTATAGTTCCATTTTATATGGTCTTTGTAAGCATGGGAAGTTGTCTGAAGGAAAACTGCTTTTGAGGGAGATGGAAAAGATGGGCATGCATCCTAATGATATCTCATATTCTATCCTTCTCGACGCATTGTTTAAGGCTCGGAAAATTAAAGAAGCATTAATGACACTCGGTTGTATGATTGTGCGTGGGAATAGCTTTGATCTGATAGCATGTACTGTTTTGATTGATGGATTCTTTAAGAATGGAGGAATCAAAGAGGCCGAATATATATTCAACAACTTATATCAACTTAATCTAGTTCCGAACTCTATCACATATTCTGTTTTAATCGATGGACGTTGCAAGTTAGGAGACATAAATGGTGCTGAATCTTCTCTGCATGAGATGGAGGAGAAAGATTGTGTTCCTAATGTCATCACATATTCTTCTATGATCAATGGTTATGTGAAGAAAGGAATGCTTTGGAATGCATTTAATGTATTGAGAAAGATGGTACACAAAAATGTGATGCCAAATATATTTACTTATGCAATTCTACTTGATGGTTCTTTCAAAGCTGGTTGGCAAGATATTGCCCTTGATCTTTACAACAAAATGAAACAGAGAGGATTGAAGGATAATGTTCTTATACTGGATGCTTTTGTGAACAACTTGAAAAGAAGTGGAAGGATGGAAGAAGCTGAGGATTTAATTGCAAAAATGGAATCAGGAGGTTTAATACCCGACCTTGTGAACTACACAAATTTGATGGATGGGTTCTTGAAGTCTGGGAAAGAGTCATCTGCTCTTAACCTGGCTCAGGAATTGATATCCAAGAATGTAGTGTTTGATGTTGTTGCTTTTAATGTCCTAATTAATGGTTTGTTTAAGCTTGGGAAATGTGATACTGAATCAATTTATAAAGTAATGGGGGATTTGGGGTTATCTCCCGACTCAGCAACATACAACACCATGATAAATGGTAATTTTAAGAAGGGGAACTGGGAAACTGCCGTGCAATTGTGGAATGAGATGAAGAGCAGAAAGTTGGTACCAAGTGCAATCACATGTAACCTTATGATAAACGGACTTTGTGAAGCTGGGAGGATAGAAAATGCAATCAATATTGTGAAAGAAATGGTTGTGATGGGTTTGTACCCCACATTAATTACTTATAGAATTCTACTCAATGCATCCTCAAAGAGTAGAAGAGCTGACACTATTTTACAGGTCCATAAGTTGCTTGTGGATTTGCACCTTGAAGTCAATAAGGATATTTACAATATTCTCATAAGCAACTTGTGCAAACTAGGAATGACTAGGAAGGCAACTGCAGTGCTGAAAGACATGGAGAAAAGAGGAATTTTAGCTGACACAATAACATACAATGCCCTGATACAAGGATACTGCATTAGCAGCCATCTGAAGAGAGCTTTTATAACATTTTCTACTATGTTGTCTGAAGGAGTTTCTCCAAATATTGAAACTTACAATCTCCTTCTAGGTGGTCTTTCTAAAGCTGGGTTAATACGCGAGGCAGATGACCTACTCAATGAGATAAAGAAACGGGGCTTAGTTCCCAATGCTTGTACCTATGAAACTCTGATGTGTGGCCATTGCAAGGTTGGAAATACAAAGGAAGCTTTGAGATTCTACTGTGAGATGGTAATTAAGGGATTTATTCCAAGAGCGGGCGCCTATAACACGCTTATTGGTTATTTTTCCAAGATGGGAAAAATGAGCCAAGCCAAGGAGCTAATGAAAGAGATGCAGAGAAAAGGTGTATCCCCCACTTCTTCCACATATGACATACTGATTTGTGGATGGTGCAAACTGTCAAAAATGCCAGAACTGGACAGGACATCGAAAGTATCATACCGGGCTGAGGCAAAAAGATTACTCAATGAGATGAATGATCGAGGATTTGTTCCCTGTGAAAGAGAAAGCGTGAATGAGGAACTGTTTGAAAGTGGGAAAGATGAAAAACGGCGAAATAGAATTGTGCATTCAAAAAAGTGGCGAGAATACTTCTTGTATGGTCTTCTTTGCTTACAATGCATGAGATTCAAGGCGTTTCCAAAGCATTTCATGGGAGCTTCAAGGGACAGTTTGCTTCGAGTTGGTTGGAGAAAGTCTGAATTCACTGGGCATAACAGATTTTCTGAAACTGTACAAGCTTAA

Protein sequence

MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLAELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGLCKHGKLSEGKLLLREMEKMGMHPNDISYSILLDALFKARKIKEALMTLGCMIVRGNSFDLIACTVLIDGFFKNGGIKEAEYIFNNLYQLNLVPNSITYSVLIDGRCKLGDINGAESSLHEMEEKDCVPNVITYSSMINGYVKKGMLWNAFNVLRKMVHKNVMPNIFTYAILLDGSFKAGWQDIALDLYNKMKQRGLKDNVLILDAFVNNLKRSGRMEEAEDLIAKMESGGLIPDLVNYTNLMDGFLKSGKESSALNLAQELISKNVVFDVVAFNVLINGLFKLGKCDTESIYKVMGDLGLSPDSATYNTMINGNFKKGNWETAVQLWNEMKSRKLVPSAITCNLMINGLCEAGRIENAINIVKEMVVMGLYPTLITYRILLNASSKSRRADTILQVHKLLVDLHLEVNKDIYNILISNLCKLGMTRKATAVLKDMEKRGILADTITYNALIQGYCISSHLKRAFITFSTMLSEGVSPNIETYNLLLGGLSKAGLIREADDLLNEIKKRGLVPNACTYETLMCGHCKVGNTKEALRFYCEMVIKGFIPRAGAYNTLIGYFSKMGKMSQAKELMKEMQRKGVSPTSSTYDILICGWCKLSKMPELDRTSKVSYRAEAKRLLNEMNDRGFVPCERESVNEELFESGKDEKRRNRIVHSKKWREYFLYGLLCLQCMRFKAFPKHFMGASRDSLLRVGWRKSEFTGHNRFSETVQA

Homology

[Close]

BLAST of Carg24026 vs. NCBI nr
Match: XP_022947610.1 (pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucurbita moschata] >XP_022947611.1 pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-59
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MA+RSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA
Sbjct: 1   MARRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60

Query: 61  ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120
           ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL
Sbjct: 61  ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120

Query: 121 CKH 124
           CKH
Sbjct: 121 CKH 123

[Close]

BLAST of Carg24026 vs. NCBI nr
Match: XP_023534270.1 (pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023534271.1 pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-59
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA
Sbjct: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60

Query: 61  ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120
           ELKIEKQFMESVSDEQSID++ITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL
Sbjct: 61  ELKIEKQFMESVSDEQSIDLSITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120

Query: 121 CKH 124
           CKH
Sbjct: 121 CKH 123

[Close]

BLAST of Carg24026 vs. NCBI nr
Match: XP_023007018.1 (pentatricopeptide repeat-containing protein At5g14770, mitochondrial isoform X1 [Cucurbita maxima] >XP_023007019.1 pentatricopeptide repeat-containing protein At5g14770, mitochondrial isoform X1 [Cucurbita maxima] >XP_023007020.1 pentatricopeptide repeat-containing protein At5g14770, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-57
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSVA P SRLLLSHVFKNPMDAIFHGFP SSRNPNLSLLGALFCSTSSSRDVRNLLA
Sbjct: 1   MAKRSVALPLSRLLLSHVFKNPMDAIFHGFPHSSRNPNLSLLGALFCSTSSSRDVRNLLA 60

Query: 61  ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120
           ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL
Sbjct: 61  ELKIEKQFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILYGL 120

Query: 121 CKH 124
           CKH
Sbjct: 121 CKH 123

[Close]

BLAST of Carg24026 vs. NCBI nr
Match: XP_008462795.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462797.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462798.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462800.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462801.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462802.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_008462803.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo] >XP_016902937.1 PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-38
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSV  PFSRLLL+   KNPM A +HGF PS+R PN SLLG  FCSTS+   VR+LLA
Sbjct: 1   MAKRSVGLPFSRLLLNRALKNPMGAAYHGFYPSARTPNPSLLGRPFCSTSTPTAVRHLLA 60

Query: 61  ELKIEK--QFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILY 120
           +L++EK  + MES SDE+ IDVN T N R+NGLEEAL+LYEEMVGSGIFPDVVTY SILY
Sbjct: 61  KLEMEKHLKLMESDSDEKLIDVNRTRNARQNGLEEALTLYEEMVGSGIFPDVVTYGSILY 120

Query: 121 GLCKH 124
           GLCKH
Sbjct: 121 GLCKH 125

[Close]

BLAST of Carg24026 vs. NCBI nr
Match: XP_022148572.1 (pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Momordica charantia] >XP_022148573.1 pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-34
Identity = 89/125 (71.20%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSVA  FS LL +    NPMDA F GFPPS R P LSLL   FCSTSSS  VR+LLA
Sbjct: 1   MAKRSVALKFSCLLHNRALNNPMDATFRGFPPSIRTPKLSLLCTPFCSTSSSTAVRHLLA 60

Query: 61  ELKIEKQF--MESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILY 120
           EL  E +   MES  DE+ IDVN T N R+NGLE+ALSLYEEMVGSGIFPDVVTYSSILY
Sbjct: 61  ELDKEWRLKSMESDLDERVIDVNRTCNDRQNGLEKALSLYEEMVGSGIFPDVVTYSSILY 120

Query: 121 GLCKH 124
           GLCKH
Sbjct: 121 GLCKH 125

[Close]

BLAST of Carg24026 vs. TrEMBL
Match: tr|A0A1S3CI98|A0A1S3CI98_CUCME (pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501086 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-38
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSV  PFSRLLL+   KNPM A +HGF PS+R PN SLLG  FCSTS+   VR+LLA
Sbjct: 1   MAKRSVGLPFSRLLLNRALKNPMGAAYHGFYPSARTPNPSLLGRPFCSTSTPTAVRHLLA 60

Query: 61  ELKIEK--QFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILY 120
           +L++EK  + MES SDE+ IDVN T N R+NGLEEAL+LYEEMVGSGIFPDVVTY SILY
Sbjct: 61  KLEMEKHLKLMESDSDEKLIDVNRTRNARQNGLEEALTLYEEMVGSGIFPDVVTYGSILY 120

Query: 121 GLCKH 124
           GLCKH
Sbjct: 121 GLCKH 125

[Close]

BLAST of Carg24026 vs. TrEMBL
Match: tr|A0A0A0LN67|A0A0A0LN67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431190 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-34
Identity = 83/125 (66.40%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MAKRSVAFPFSRLLLSHVFKNPMDAIFHGFPPSSRNPNLSLLGALFCSTSSSRDVRNLLA 60
           MAKRSV  PFSRLLL+   K PM A +H   PS+R  N SLLG  FCSTS+   VR+LLA
Sbjct: 1   MAKRSVGLPFSRLLLNQALKTPMGATYHELYPSARTSNPSLLGRPFCSTSTPTAVRHLLA 60

Query: 61  ELKIEK--QFMESVSDEQSIDVNITSNVRENGLEEALSLYEEMVGSGIFPDVVTYSSILY 120
           ++++EK  + MES SDE+ IDVN T N R+NGLEEAL+LYEEMVGSGIFPDVVT+ SILY
Sbjct: 61  KMEMEKHLKLMESGSDEKLIDVNRTRNARQNGLEEALTLYEEMVGSGIFPDVVTFGSILY 120

Query: 121 GLCKH 124
           GLCKH
Sbjct: 121 GLCKH 125

[Close]

BLAST of Carg24026 vs. TrEMBL
Match: tr|A0A0B2PQZ0|A0A0B2PQZ0_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja OX=3848 GN=glysoja_026922 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-04
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 58  LLAELKIEKQFMESVSDEQSIDVNITSNV----RENGLEEALSLYEEMVGSGIFPDVVTY 117
           LL E ++E +  + + D Q   V  T+ +    +  G++++ SLYE+M+ SGI PDVVT 
Sbjct: 117 LLNECRVETR--DGIRDLQPTVVTWTTLIAAYCKHRGIDDSFSLYEQMIMSGIMPDVVTC 176

Query: 118 SSILYGLCKH 124
           SSILYGLC+H
Sbjct: 177 SSILYGLCRH 184

The following BLAST results are available for this feature:

BLAST of Carg24026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947610.1	1.3e-59	99.19	pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Cucurbita ...	[more]
XP_023534270.1	5.0e-59	98.37	pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like [Cucur...	[more]
XP_023007018.1	1.6e-57	97.56	pentatricopeptide repeat-containing protein At5g14770, mitochondrial isoform X1 ...	[more]
XP_008462795.1	3.7e-38	71.20	PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial ...	[more]
XP_022148572.1	1.1e-34	71.20	pentatricopeptide repeat-containing protein At5g14770, mitochondrial [Momordica ...	[more]

BLAST of Carg24026 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24026 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24026 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI98\|A0A1S3CI98_CUCME	2.5e-38	71.20	pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0LN67\|A0A0A0LN67_CUCSA	2.2e-34	66.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431190 PE=4 SV=1	[more]
tr\|A0A0B2PQZ0\|A0A0B2PQZ0_GLYSO	5.2e-04	44.29	Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja OX=38...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24026-RA	Carg24026-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 84..106 e-value: 0.14 score: 12.4 coord: 329..350 e-value: 0.33 score: 11.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 108..157 e-value: 1.5E-13 score: 50.6 coord: 179..227 e-value: 5.9E-10 score: 39.1 coord: 353..402 e-value: 1.3E-7 score: 31.6 coord: 248..294 e-value: 6.3E-14 score: 51.8 coord: 597..646 e-value: 2.4E-13 score: 49.9 coord: 422..470 e-value: 7.3E-17 score: 61.2 coord: 531..575 e-value: 3.6E-12 score: 46.2 coord: 671..716 e-value: 3.3E-15 score: 55.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 565..599 e-value: 2.0E-4 score: 19.3 coord: 531..563 e-value: 5.2E-8 score: 30.6 coord: 601..634 e-value: 7.0E-8 score: 30.2 coord: 182..214 e-value: 0.0022 score: 16.0 coord: 671..703 e-value: 1.0E-7 score: 29.7 coord: 426..458 e-value: 3.2E-9 score: 34.4 coord: 216..250 e-value: 5.5E-7 score: 27.4 coord: 635..667 e-value: 9.0E-8 score: 29.8 coord: 460..493 e-value: 7.7E-8 score: 30.1 coord: 251..284 e-value: 1.2E-4 score: 20.0 coord: 111..144 e-value: 6.2E-8 score: 30.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 423..457 score: 12.825
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 493..527 score: 6.862
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 528..562 score: 10.907
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 458..492 score: 11.948
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 179..213 score: 9.284
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 284..318 score: 10.095
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 74..108 score: 8.385
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 109..143 score: 12.891
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 598..632 score: 12.277
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 389..422 score: 7.739
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 214..248 score: 11.345
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 563..597 score: 11.608
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 354..388 score: 8.506
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 144..178 score: 7.98
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 249..283 score: 11.827
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 319..353 score: 9.536
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 668..702 score: 11.718
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 633..667 score: 11.751
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 664..769 e-value: 6.1E-16 score: 60.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 412..487 e-value: 2.0E-21 score: 78.3 coord: 280..346 e-value: 2.1E-11 score: 45.7 coord: 208..279 e-value: 1.3E-18 score: 69.2 coord: 488..589 e-value: 3.1E-17 score: 64.6 coord: 347..411 e-value: 6.8E-12 score: 47.2 coord: 33..134 e-value: 5.2E-14 score: 54.1 coord: 135..207 e-value: 3.6E-13 score: 51.4 coord: 590..663 e-value: 1.8E-19 score: 71.9
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 378..513 coord: 587..749 coord: 83..245
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 378..513
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 307..452
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 211..391
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 489..603
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 489..603
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 587..749 coord: 307..452 coord: 211..391 coord: 83..245

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24026	Cla006794	Watermelon (97103) v1	carwmB1055
Carg24026	Csa2G431190	Cucumber (Chinese Long) v2	carcuB1067
Carg24026	MELO3C024749	Melon (DHL92) v3.5.1	carmeB1022
Carg24026	ClCG02G007820	Watermelon (Charleston Gray)	carwcgB1026
Carg24026	CSPI02G27330	Wild cucumber (PI 183967)	carcpiB1089
Carg24026	Cucsa.017350	Cucumber (Gy14) v1	carcgyB1169
Carg24026	CmaCh02G004800	Cucurbita maxima (Rimu)	carcmaB1460
Carg24026	CmoCh02G004840	Cucurbita moschata (Rifu)	carcmoB1415
Carg24026	Lsi10G002150	Bottle gourd (USVL1VR-Ls)	carlsiB961
Carg24026	Cp4.1LG05g11880	Cucurbita pepo (Zucchini)	carcpeB1469
Carg24026	MELO3C024749.2	Melon (DHL92) v3.6.1	carmedB1034
Carg24026	CsaV3_2G035920	Cucumber (Chinese Long) v3	carcucB1100
Carg24026	Cla97C02G034460	Watermelon (97103) v2	carwmbB1111
Carg24026	Bhi10G001229	Wax gourd	carwgoB1237

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24026	Cucurbita moschata (Rifu)	carcmoB1414
Carg24026	Cucurbita pepo (Zucchini)	carcpeB1468
Carg24026	Silver-seed gourd	carcarB648
Carg24026	Cucumber (Gy14) v2	carcgybB1036
Carg24026	Cucurbita maxima (Rimu)	carcmaB1459