Carg24018 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24018
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	COP9 signalosome complex subunit 8
Location	Cucurbita_argyrosperma_scaffold_129 : 386295 .. 388064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAAGATCACAGCTTGAACGTTGTTTGCCTATACGTCCCTTTACGAGAGAAGAAGATTGAATATGCTTCAACTACAAAGATTGAATACGGGGCATTGGTAACCTAAGCCATTCTCGAAGTGGGCCTGATTGTCGGATCGAAAATTCCTCTTGATGCGATAGAACACGTCTAGCTGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAGCCGCTTTTATAAATATAATAATTACATTTATATTTCCATGTAATTATTATTCAAATTATGCTTAATCTCACTAATAATTTTTTAATTTTTTTTTGTTTGTTATTACATATGGTTTTTTTTTAAAAAAAGTATTAATAAGTAAATTATTAAATTAATAAAAAAAATTAATATTTTTGAAACGTTGTATTAATGATTTTGTTTCAAAATCAGAGTATTTATATATATATATATTTTTAAAGAGTAATTATTTTTATTTTTATTATTATTAATTTAAGAATTATATATTATGGAAGGAAGGAAGGAAGGAGCAGAGTATAGTTGGCAGCAGGAGACGAGAAAGGCGAGCAGAGTGGAAACATGGATTTTGCTCGTCTCACTGAGGCCTTGGATTCCGAATCTTACGAAAACATCGCTGATATCTGTGATGAACTCATGCTTCAGGCCAGATAATTTTCTTCTTTTTTTCACTTTAAGTTTCACTTTGTTTGTTCCTCGATTCTCCGAAACCCTGGCTTGATTTATCCACTGGGATTTGTTTAAATTAACAGGCTGCAGCTGAGGGCATTTCTTATCAGGATGAATGGCCTTACACAATCCATTTTCTTGGCTACTTTTACGTTGATGATATGTAAGATCATTTTCCATGTTTCCTATTCATTTCACTTCAAATCGTGAAGAAATTTTTAGAATACTTCTTGGTTGAATCTTTTGTGGATCTTGTATTTTGAAGCGCCATTTTAATTCTTGGGTTAGTTGATTTTACTCTCGTGAAGGAATTTTAAACTACATTTGAGAAGTTTTGTTTCTTTGGAACGAAATAAAGATTAGGGCACCAAACTAGAAAATTATGTAAGATAATGTTATCATTGATTGTTGGCTCATGAAAATTCTCAACCAATGCAGGAGTTACCCCAGAATTTCCTTGGGAGTGTTCTTGAGGAAATATGAATTATTTCTTGGCCCAGAATTTTTATTCTATTTGAAAAGAACAATATGGTTAAAGTTGTCCTGTCGATGTTCCTAAGAAACATACTTTAATTTCTTTATTTATCTTCATCTGTCAACCTTTTTAAACTTGCTGCCAGGGCTCTATAATGTTACTTCGGAGTTATTTGTTTCTAAATGCACTGGCTTGCATTTCGTGAGTTAAGTCCATATGTAAACTATTTATAGATTTTATCTTAGATTCACCGTTCAATTTTTGTTTCAGATATCTTTTGTTCTTTCATTAAATTTTGTGGTTGAATCTTTTCGTAACTAGGTTAATATCATAACACTTGGTTGAAGTTGAGTTTCCTTATGTGAATTTGTGGATTATTGGCTGACTGTTAACTGTTAAGTGGTTTCTTGCAGCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTGGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGATTCGGGACCATGGGGGTGTTTATGAGGCTATTGATGGATTTGATTGGTCTCAAGAGGTTCGAGGCCTATTAGCAGCATTTTCAGGCAAGTCGCTATAA

mRNA sequence

CGTAAAGATCACAGCTTGAACGTTGTTTGCCTATACGTCCCTTTACGAGAGAAGAAGATTGAATATGCTTCAACTACAAAGATTGAATACGGGGCATTGGCTGCAGCTGAGGGCATTTCTTATCAGGATGAATGGCCTTACACAATCCATTTTCTTGGCTACTTTTACGTTGATGATATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTGGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGATTCGGGACCATGGGGGTGTTTATGAGGCTATTGATGGATTTGATTGGTCTCAAGAGGTTCGAGGCCTATTAGCAGCATTTTCAGGCAAGTCGCTATAA

Coding sequence (CDS)

CGTAAAGATCACAGCTTGAACGTTGTTTGCCTATACGTCCCTTTACGAGAGAAGAAGATTGAATATGCTTCAACTACAAAGATTGAATACGGGGCATTGGCTGCAGCTGAGGGCATTTCTTATCAGGATGAATGGCCTTACACAATCCATTTTCTTGGCTACTTTTACGTTGATGATATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATAAAAGAGAACCGACCAGAACTGGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGATTCGGGACCATGGGGGTGTTTATGAGGCTATTGATGGATTTGATTGGTCTCAAGAGGTTCGAGGCCTATTAGCAGCATTTTCAGGCAAGTCGCTATAA

Protein sequence

RKDHSLNVVCLYVPLREKKIEYASTTKIEYGALAAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL

Homology

[Close]

BLAST of Carg24018 vs. NCBI nr
Match: XP_022927899.1 (COP9 signalosome complex subunit 8-like [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RDHGGVYEAIDGFDWSQEVRGLLAAFS
Sbjct: 89  RDHGGVYEAIDGFDWSQEVRGLLAAFS 115

[Close]

BLAST of Carg24018 vs. NCBI nr
Match: XP_023531250.1 (COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+YQDEWPYTIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGIAYQDEWPYTIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RDHGGVYEAIDGFDW QEVRGLLAAFS
Sbjct: 89  RDHGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]

BLAST of Carg24018 vs. NCBI nr
Match: XP_022989724.1 (COP9 signalosome complex subunit 8-like [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 6.4e-43
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+YQDEWPYTIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGIAYQDEWPYTIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RD+GGVYEAIDGFDW QEVRGLLAAFS
Sbjct: 89  RDYGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]

BLAST of Carg24018 vs. NCBI nr
Match: KGN47916.1 (hypothetical protein Csa_6G411200 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKSIPSTIKENRPELVAIWKIGQKLWV 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL 125
           RDH GVYEAI   DW QEV+GLLAAFSGKSL
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFSGKSL 119

[Close]

BLAST of Carg24018 vs. NCBI nr
Match: XP_004140102.1 (PREDICTED: COP9 signalosome complex subunit 8 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 7.3e-39
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKSIPSTIKENRPELVAIWKIGQKLWV 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RDH GVYEAI   DW QEV+GLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]

BLAST of Carg24018 vs. TAIR10
Match: AT4G14110.1 (COP9 signalosome, subunit CSN8)

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-34
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 35  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIR 94
           A+EGI Y D+WPY IH LGYFYVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  
Sbjct: 30  ASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTH 89

Query: 95  DHGGVYEAIDGFDWSQEVRGLLAAFS 121
           D+ GVYEAI G+DWSQE + ++AAFS
Sbjct: 90  DYAGVYEAIRGYDWSQEAKDMVAAFS 115

[Close]

BLAST of Carg24018 vs. Swiss-Prot
Match: sp|P43255|CSN8_ARATH (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 35  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIR 94
           A+EGI Y D+WPY IH LGYFYVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  
Sbjct: 30  ASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTH 89

Query: 95  DHGGVYEAIDGFDWSQEVRGLLAAFS 121
           D+ GVYEAI G+DWSQE + ++AAFS
Sbjct: 90  DYAGVYEAIRGYDWSQEAKDMVAAFS 115

[Close]

BLAST of Carg24018 vs. Swiss-Prot
Match: sp|Q6GQA6|CSN8_XENLA (COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 54  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVR 113
           Y   +D+N+AR+LWK IPS IK +  EL  +W++GQK+W RD  G+Y +I  + WS+ ++
Sbjct: 46  YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQ 105

Query: 114 GLLAA 119
            ++ A
Sbjct: 106 QIMEA 110

[Close]

BLAST of Carg24018 vs. Swiss-Prot
Match: sp|Q7ZUZ0|CSN8_DANRE (COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 54  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVR 113
           Y   +D+N+AR+LWK IP  IK   PE+ A+W +GQ++W RD  G+Y AI  + WS+ + 
Sbjct: 42  YLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESIL 101

Query: 114 GLLAA 119
            ++ A
Sbjct: 102 PVMEA 106

[Close]

BLAST of Carg24018 vs. Swiss-Prot
Match: sp|Q8VBV7|CSN8_MOUSE (COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-12
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 54  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVR 113
           Y   +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ V+
Sbjct: 44  YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQ 103

Query: 114 GLLAA 119
            ++ A
Sbjct: 104 PIMEA 108

[Close]

BLAST of Carg24018 vs. Swiss-Prot
Match: sp|Q6P4Z9|CSN8_RAT (COP9 signalosome complex subunit 8 OS=Rattus norvegicus OX=10116 GN=Cops8 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-12
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 54  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVR 113
           Y   +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ V+
Sbjct: 44  YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQ 103

Query: 114 GLLAA 119
            ++ A
Sbjct: 104 PIMEA 108

[Close]

BLAST of Carg24018 vs. TrEMBL
Match: tr|A0A0A0KJG9|A0A0A0KJG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G411200 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-41
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKSIPSTIKENRPELVAIWKIGQKLWV 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL 125
           RDH GVYEAI   DW QEV+GLLAAFSGKSL
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFSGKSL 119

[Close]

BLAST of Carg24018 vs. TrEMBL
Match: tr|A0A1S3BMN0|A0A1S3BMN0_CUCME (COP9 signalosome complex subunit 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491316 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW 
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWT 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RDH GVYEAI   DW QEV+GLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]

BLAST of Carg24018 vs. TrEMBL
Match: tr|A0A1S3BMY1|A0A1S3BMY1_CUCME (COP9 signalosome complex subunit 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491316 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW 
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWT 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RDH GVYEAI   DW QEV+GLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]

BLAST of Carg24018 vs. TrEMBL
Match: tr|W9RV36|W9RV36_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024155 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.5e-37
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 35  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIR 94
           AAEG ++QDEWPYTIH LG+ Y DDINSARFLWK+IP  IK+++PELVA WKIGQKLWIR
Sbjct: 244 AAEGFAFQDEWPYTIHLLGHIYSDDINSARFLWKSIPLAIKDSQPELVAAWKIGQKLWIR 303

Query: 95  DHGGVYEAIDGFDWSQEVRGLLAAFSGKSL 125
           DHGGVYEAI GFDWSQ+V+GL+AAFSGK L
Sbjct: 304 DHGGVYEAIRGFDWSQQVQGLVAAFSGKCL 333

[Close]

BLAST of Carg24018 vs. TrEMBL
Match: tr|A0A2I4GE15|A0A2I4GE15_9ROSI (COP9 signalosome complex subunit 8 OS=Juglans regia OX=51240 GN=LOC109007059 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 68/87 (78.16%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93
           AAAEG++YQD+WPY IH LG+FYVDDINSARFLWK+IPS IKE++ EL A WKIGQKLW 
Sbjct: 29  AAAEGVAYQDQWPYVIHLLGHFYVDDINSARFLWKSIPSEIKESQLELAAAWKIGQKLWT 88

Query: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFS 121
           RD+GGV+EAI GFDWSQEV+GL+AAFS
Sbjct: 89  RDYGGVHEAIRGFDWSQEVQGLVAAFS 115

The following BLAST results are available for this feature:

BLAST of Carg24018 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927899.1	3.1e-45	100.00	COP9 signalosome complex subunit 8-like [Cucurbita moschata]	[more]
XP_023531250.1	1.3e-43	96.55	COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989724.1	6.4e-43	95.40	COP9 signalosome complex subunit 8-like [Cucurbita maxima]	[more]
KGN47916.1	4.6e-41	86.81	hypothetical protein Csa_6G411200 [Cucumis sativus]	[more]
XP_004140102.1	7.3e-39	86.21	PREDICTED: COP9 signalosome complex subunit 8 [Cucumis sativus]	[more]

BLAST of Carg24018 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14110.1	3.9e-34	68.60	COP9 signalosome, subunit CSN8	[more]

BLAST of Carg24018 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P43255\|CSN8_ARATH	7.0e-33	68.60	COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 ...	[more]
sp\|Q6GQA6\|CSN8_XENLA	1.2e-13	43.08	COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2	[more]
sp\|Q7ZUZ0\|CSN8_DANRE	2.8e-13	43.08	COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1	[more]
sp\|Q8VBV7\|CSN8_MOUSE	8.9e-12	41.54	COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1	[more]
sp\|Q6P4Z9\|CSN8_RAT	8.9e-12	41.54	COP9 signalosome complex subunit 8 OS=Rattus norvegicus OX=10116 GN=Cops8 PE=2 S...	[more]

BLAST of Carg24018 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJG9\|A0A0A0KJG9_CUCSA	3.0e-41	86.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G411200 PE=4 SV=1	[more]
tr\|A0A1S3BMN0\|A0A1S3BMN0_CUCME	4.8e-39	88.51	COP9 signalosome complex subunit 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S3BMY1\|A0A1S3BMY1_CUCME	4.8e-39	88.51	COP9 signalosome complex subunit 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|W9RV36\|W9RV36_9ROSA	4.5e-37	78.89	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024155 PE=4 SV=1	[more]
tr\|A0A2I4GE15\|A0A2I4GE15_9ROSI	5.5e-35	78.16	COP9 signalosome complex subunit 8 OS=Juglans regia OX=51240 GN=LOC109007059 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR033464	CSN8_PSD8_EIF3K

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24018-RA	Carg24018-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033464	CSN8/PSMD8/EIF3K	PFAM	PF10075	CSN8_PSD8_EIF3K	coord: 43..119 e-value: 1.7E-12 score: 47.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24018	Csa6G411200	Cucumber (Chinese Long) v2	carcuB0752
Carg24018	MELO3C014386	Melon (DHL92) v3.5.1	carmeB0730
Carg24018	ClCG09G014140	Watermelon (Charleston Gray)	carwcgB0713
Carg24018	CSPI06G22180	Wild cucumber (PI 183967)	carcpiB0768
Carg24018	Cucsa.184650	Cucumber (Gy14) v1	carcgyB0826
Carg24018	CmaCh19G003120	Cucurbita maxima (Rimu)	carcmaB1029
Carg24018	CmoCh19G003340	Cucurbita moschata (Rifu)	carcmoB1001
Carg24018	CmoCh11G015330	Cucurbita moschata (Rifu)	carcmoB1000
Carg24018	Lsi03G008780	Bottle gourd (USVL1VR-Ls)	carlsiB674
Carg24018	Cp4.1LG04g06670	Cucurbita pepo (Zucchini)	carcpeB1035
Carg24018	Cp4.1LG15g02780	Cucurbita pepo (Zucchini)	carcpeB1034
Carg24018	CsGy6G021460	Cucumber (Gy14) v2	carcgybB0730
Carg24018	MELO3C014386.2	Melon (DHL92) v3.6.1	carmedB0741
Carg24018	CsaV3_6G037290	Cucumber (Chinese Long) v3	carcucB0771
Carg24018	Cla97C09G176590	Watermelon (97103) v2	carwmbB0770
Carg24018	Bhi05G000556	Wax gourd	carwgoB0868

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24018	Cucurbita maxima (Rimu)	carcmaB1028
Carg24018	Watermelon (Charleston Gray)	carwcgB0712
Carg24018	Watermelon (97103) v2	carwmbB0769