Carg23991 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTAGAAATTCATAAGAAAATAGTTCATGAACATTGAGGAGAGACCGAGGAACTTGGTCCCCAAGGTGTGAGGAGACGATCATTTATAAGGCTGTTCCCGATTCACTCTCTCCTTTTGCTTTGTTATTAGGGTTTTGACGCAATTTAGATTGTTTCGGAACTTTTGAATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATGTATGATTTCTTGCTTCTTTCATGCATGTTTGAGAAATCTGTTTGAGCTTTTGTAACTTTTTGTTTCATAGTTCGCTGCTTAGACTAGTTACTTTGGGATGATTTTGTGAATTAAGCTATGAACGGCAAAACTTTGGAAGTATAGAATCATCCTCGACCTTATTCTACCATTTCTTAGATTTGCGCGTATAACTGATCGATGCGAACTGATTCCAAAACGTAGTTCTATAATATTATCTCCTTCATTTTTCCATTTCTGGTTTGAAGATATGGTAGGTTAGGTTTTGTGGAGGCGGTTCCTATTTGTTACTTCAGGTATTAGCCCCTTCTTTGAACATAAGAAGTATTAAGTTATTTGATGCAGTATGGATCCTATCGAATTTTCCTCGACTGTTCTAGAGTCCATTCCTTCAAAATTAGGCTGCCTAATTGTGAGATCCCACGTCGGTTGAGGAGGGTGGAATGAAACATTCCTCCTTAAGGTGTGGAAAACTCTATCCAGTAGACGTGTTTTAAAACTGCGAGACTGACGATGATACGTAACAGGCCAAAGCAGACAATATCTATTAGCGGTGGGCTTGGGATGTTACAAATGGTATCAGAATCAAACACCGGGAGGTATGCCAACGAGGACGCTAGGCCCTCAAGGGGGGTGGATTGTGAGATCCCACAACATTCCTTATAAGGGTGTAGAAATATCTCCCTAGAAGACACGCTTTAAAACCGTGAGGCTAACGACAATATGTAACGGGTCAAAGCGGACAATATCTACTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGTCAAACACTGGGCGGTGTGCCAGCGAGGACTCTAGGCCCTCAAGGAGGGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCTTCCTAAGGGTGTGGAGACCTCTCCTTAGTAGACGTGTTTTAAAACCGTGAGGCTGATAGCGATAAGGGGCCAAAGCGAACAATATCTGTTAGTGGTGAGCTTCAATTGTTACAAATGGTATCAGAGTCAGACATCGGGCGGTGTGCCAGTGAGGACGCTAGGCCCTCAAGGGGGTGGGATGTTAGATCCCACATTAGCTTGAGGGGGGAACGAAACGTTCCTCATAAGGGTGTAGAAACCTCTCCCTAGTAGACGTGTTTTAAAATAGCAAAACATAACGGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTAGGCTGTTACACTAATATTTTGAATCATGAACGTGGATTACTGCGGTAGTTTTTCCTTCCTGAACAGCTTCCCATGCTTTTGTGTTTAATAAACTTGTCAGCCATCATCTTTTCCATTTTTATGTAGAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGGTACTTCCTGCTCACTTGTTATAGTTCTCAAGGGTTTTAAGAACATACATCATCTTATTTATGTTTAGCCCATTTGCTATAACAATAAGATCCCAATTTCATTGGGTTCCTAAGATTTAGTTCTGTACTGAAAGATACTTTTGTATAAGAACTTGTTCATAAAGCCCTGATTTATTATGCTATGTAGTGTTGCACTAAATAAAAATACCAATTATATTTTGAACCTCTGATTTCAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG TTCTTAGAAATTCATAAGAAAATAGTTCATGAACATTGAGGAGAGACCGAGGAACTTGGTCCCCAAGGTGTGAGGAGACGATCATTTATAAGGCTGTTCCCGATTCACTCTCTCCTTTTGCTTTGTTATTAGGGTTTTGACGCAATTTAGATTGTTTCGGAACTTTTGAATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP
BLAST of Carg23991 vs. NCBI nr
Match: XP_022927778.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg23991 vs. NCBI nr
Match: XP_023531822.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43 Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0
BLAST of Carg23991 vs. NCBI nr
Match: XP_023531819.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531820.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531821.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43 Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0
BLAST of Carg23991 vs. NCBI nr
Match: XP_022927780.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022927781.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata]) HSP 1 Score: 172.9 bits (437), Expect = 5.9e-40 Identity = 86/110 (78.18%), Postives = 98/110 (89.09%), Query Frame = 0
BLAST of Carg23991 vs. NCBI nr
Match: XP_022989023.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39 Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0
BLAST of Carg23991 vs. TAIR10
Match: AT1G15780.1 (unknown protein) HSP 1 Score: 111.3 bits (277), Expect = 3.8e-25 Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 0
BLAST of Carg23991 vs. TAIR10
Match: AT1G15790.1 (unknown protein) HSP 1 Score: 79.0 bits (193), Expect = 2.1e-15 Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Carg23991 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 6.9e-24 Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 0
BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A1S3C0H1|A0A1S3C0H1_CUCME (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 9.6e-31 Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0
BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A2P6QLK2|A0A2P6QLK2_ROSCH (Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075871 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27 Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 0
BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A251NKZ7|A0A251NKZ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0
BLAST of Carg23991 vs. TrEMBL
Match: tr|M5W7P2|M5W7P2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000277mg PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0
BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A251NJA2|A0A251NJA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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