Carg23991 (gene) Silver-seed gourd

NameCarg23991
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmediator of RNA polymerase II transcription subunit 15a
LocationCucurbita_argyrosperma_scaffold_129 : 100059 .. 102143 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTAGAAATTCATAAGAAAATAGTTCATGAACATTGAGGAGAGACCGAGGAACTTGGTCCCCAAGGTGTGAGGAGACGATCATTTATAAGGCTGTTCCCGATTCACTCTCTCCTTTTGCTTTGTTATTAGGGTTTTGACGCAATTTAGATTGTTTCGGAACTTTTGAATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATGTATGATTTCTTGCTTCTTTCATGCATGTTTGAGAAATCTGTTTGAGCTTTTGTAACTTTTTGTTTCATAGTTCGCTGCTTAGACTAGTTACTTTGGGATGATTTTGTGAATTAAGCTATGAACGGCAAAACTTTGGAAGTATAGAATCATCCTCGACCTTATTCTACCATTTCTTAGATTTGCGCGTATAACTGATCGATGCGAACTGATTCCAAAACGTAGTTCTATAATATTATCTCCTTCATTTTTCCATTTCTGGTTTGAAGATATGGTAGGTTAGGTTTTGTGGAGGCGGTTCCTATTTGTTACTTCAGGTATTAGCCCCTTCTTTGAACATAAGAAGTATTAAGTTATTTGATGCAGTATGGATCCTATCGAATTTTCCTCGACTGTTCTAGAGTCCATTCCTTCAAAATTAGGCTGCCTAATTGTGAGATCCCACGTCGGTTGAGGAGGGTGGAATGAAACATTCCTCCTTAAGGTGTGGAAAACTCTATCCAGTAGACGTGTTTTAAAACTGCGAGACTGACGATGATACGTAACAGGCCAAAGCAGACAATATCTATTAGCGGTGGGCTTGGGATGTTACAAATGGTATCAGAATCAAACACCGGGAGGTATGCCAACGAGGACGCTAGGCCCTCAAGGGGGGTGGATTGTGAGATCCCACAACATTCCTTATAAGGGTGTAGAAATATCTCCCTAGAAGACACGCTTTAAAACCGTGAGGCTAACGACAATATGTAACGGGTCAAAGCGGACAATATCTACTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGTCAAACACTGGGCGGTGTGCCAGCGAGGACTCTAGGCCCTCAAGGAGGGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCTTCCTAAGGGTGTGGAGACCTCTCCTTAGTAGACGTGTTTTAAAACCGTGAGGCTGATAGCGATAAGGGGCCAAAGCGAACAATATCTGTTAGTGGTGAGCTTCAATTGTTACAAATGGTATCAGAGTCAGACATCGGGCGGTGTGCCAGTGAGGACGCTAGGCCCTCAAGGGGGTGGGATGTTAGATCCCACATTAGCTTGAGGGGGGAACGAAACGTTCCTCATAAGGGTGTAGAAACCTCTCCCTAGTAGACGTGTTTTAAAATAGCAAAACATAACGGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTAGGCTGTTACACTAATATTTTGAATCATGAACGTGGATTACTGCGGTAGTTTTTCCTTCCTGAACAGCTTCCCATGCTTTTGTGTTTAATAAACTTGTCAGCCATCATCTTTTCCATTTTTATGTAGAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGGTACTTCCTGCTCACTTGTTATAGTTCTCAAGGGTTTTAAGAACATACATCATCTTATTTATGTTTAGCCCATTTGCTATAACAATAAGATCCCAATTTCATTGGGTTCCTAAGATTTAGTTCTGTACTGAAAGATACTTTTGTATAAGAACTTGTTCATAAAGCCCTGATTTATTATGCTATGTAGTGTTGCACTAAATAAAAATACCAATTATATTTTGAACCTCTGATTTCAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG

mRNA sequence

TTCTTAGAAATTCATAAGAAAATAGTTCATGAACATTGAGGAGAGACCGAGGAACTTGGTCCCCAAGGTGTGAGGAGACGATCATTTATAAGGCTGTTCCCGATTCACTCTCTCCTTTTGCTTTGTTATTAGGGTTTTGACGCAATTTAGATTGTTTCGGAACTTTTGAATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG

Coding sequence (CDS)

ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG

Protein sequence

MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP
BLAST of Carg23991 vs. NCBI nr
Match: XP_022927778.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA
Sbjct: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP 111
           VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP
Sbjct: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP 110

BLAST of Carg23991 vs. NCBI nr
Match: XP_023531822.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MDSNHLGPAQGGES VDAGDWRSQLQPDSRHQIVDRIMETLKR+LPVSGPEGLSE+RKIA
Sbjct: 1   MDSNHLGPAQGGESEVDAGDWRSQLQPDSRHQIVDRIMETLKRLLPVSGPEGLSEMRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVP 105
           VRFEEKIYTA+TSE EYRRKI VKMLT+EPNSETTTALP    P
Sbjct: 61  VRFEEKIYTAATSESEYRRKITVKMLTMEPNSETTTALPPKSAP 104

BLAST of Carg23991 vs. NCBI nr
Match: XP_023531819.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531820.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531821.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MDSNHLGPAQGGES VDAGDWRSQLQPDSRHQIVDRIMETLKR+LPVSGPEGLSE+RKIA
Sbjct: 1   MDSNHLGPAQGGESEVDAGDWRSQLQPDSRHQIVDRIMETLKRLLPVSGPEGLSEMRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVP 105
           VRFEEKIYTA+TSE EYRRKI VKMLT+EPNSETTTALP    P
Sbjct: 61  VRFEEKIYTAATSESEYRRKITVKMLTMEPNSETTTALPPKSAP 104

BLAST of Carg23991 vs. NCBI nr
Match: XP_022927780.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022927781.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 5.9e-40
Identity = 86/110 (78.18%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MDSNHLGPAQGGESGVDAGDWRSQLQP+SRH+IVD+I+ETLKR LPVSGPEGLSE+RKIA
Sbjct: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP 111
           VRFEEK+YT +TS+ +Y RKI ++MLT+E    TT ALPSM  PMASNQP
Sbjct: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

BLAST of Carg23991 vs. NCBI nr
Match: XP_022989023.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MDSNHLGP QGGESGVDAGDWRSQLQP+SRH+IV++I+ETLKR +PVSGPEGLSELRKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP 111
           VRFEEK+Y A+TS+ +Y RKI ++MLT+E  S TTTALPSM  P++SNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

BLAST of Carg23991 vs. TAIR10
Match: AT1G15780.1 (unknown protein)

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-25
Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKI 60
           MD+N+  P+   GE  +D GDWR+QL PDSR +IV++IMETLK+ LP SGPEG++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASN 109
           A RFEEKI++ + ++ +Y RKI +KMLT+E  S+   A  S  +P A+N
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQ-NAAGSSAAIPAANN 108

BLAST of Carg23991 vs. TAIR10
Match: AT1G15790.1 (unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-15
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 19  GDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYR 78
           GDWR+Q    SR +IV++IMET  + LP   PEG +ELRKIAVRFEEK++  ++++ EY 
Sbjct: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79  RKIHVKMLTLEPNSETTTALPS 101
           R+I +KML +E  S+      S
Sbjct: 65  RQICMKMLNMETKSQNAAGSSS 86

BLAST of Carg23991 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.9e-24
Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKI 60
           MD+N+  P+   GE  +D GDWR+QL PDSR +IV++IMETLK+ LP SGPEG++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASN 109
           A RFEEKI++ + ++ +Y RKI +KMLT+E  S+   A  S  +P A+N
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQ-NAAGSSAAIPAANN 108

BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A1S3C0H1|A0A1S3C0H1_CUCME (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.6e-31
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MD+N+  P QGGE G++AGDWRSQLQPDSRH+IV++IMETLKR LPVSG EGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETT--TALPSMPVPMASNQP 111
           VRFEEKI+TA+TS+ +Y RKI +KMLT+E  ++ T    LPS P+ + SN+P
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPM-VPSNKP 111

BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A2P6QLK2|A0A2P6QLK2_ROSCH (Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075871 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
           MD+N+  P QGGE  +DAGDWRSQLQ DSR +IV++IM+TLKR LP SG EGL EL+KIA
Sbjct: 1   MDTNNWRPPQGGEPAMDAGDWRSQLQQDSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETT--TALPSMPVPMASNQP 111
           VRFEEKIYTA+TS+ +Y RKI +KMLT+E  S+ T  T+LPS     ++  P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIGTSLPSNSAGNSNRPP 112

BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A251NKZ7|A0A251NKZ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0

Query: 1  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
          MD+N+  P Q GE+ +DAGDWRSQLQPDSR +IV++IM+TLKR LP SG EGL EL+KIA
Sbjct: 1  MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61 VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTA 98
          VRFEEKIYTA+TS+ +Y RKI +KMLT+E  S+ T A
Sbjct: 61 VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMA 97

BLAST of Carg23991 vs. TrEMBL
Match: tr|M5W7P2|M5W7P2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000277mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0

Query: 1  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
          MD+N+  P Q GE+ +DAGDWRSQLQPDSR +IV++IM+TLKR LP SG EGL EL+KIA
Sbjct: 1  MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61 VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTA 98
          VRFEEKIYTA+TS+ +Y RKI +KMLT+E  S+ T A
Sbjct: 61 VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMA 97

BLAST of Carg23991 vs. TrEMBL
Match: tr|A0A251NJA2|A0A251NJA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 0

Query: 1  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIA 60
          MD+N+  P Q GE+ +DAGDWRSQLQPDSR +IV++IM+TLKR LP SG EGL EL+KIA
Sbjct: 1  MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61 VRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTA 98
          VRFEEKIYTA+TS+ +Y RKI +KMLT+E  S+ T A
Sbjct: 61 VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMA 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927778.11.2e-53100.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_023531822.11.5e-4389.42mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbi... [more]
XP_023531819.11.5e-4389.42mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_022927780.15.9e-4078.18mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata... [more]
XP_022989023.12.2e-3976.36mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi... [more]
Match NameE-valueIdentityDescription
AT1G15780.13.8e-2553.21unknown protein[more]
AT1G15790.12.1e-1548.78unknown protein[more]
Match NameE-valueIdentityDescription
sp|F4I171|MD15A_ARATH6.9e-2453.21Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C0H1|A0A1S3C0H1_CUCME9.6e-3166.96mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ... [more]
tr|A0A2P6QLK2|A0A2P6QLK2_ROSCH4.9e-2761.61Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=746... [more]
tr|A0A251NKZ7|A0A251NKZ7_PRUPE6.4e-2767.01Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1[more]
tr|M5W7P2|M5W7P2_PRUPE6.4e-2767.01Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000277mg PE=4 SV=1[more]
tr|A0A251NJA2|A0A251NJA2_PRUPE6.4e-2767.01Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036529KIX_dom_sf
IPR036546MED15_KIX
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003712 transcription cofactor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23991-RACarg23991-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.246.20coord: 20..98
e-value: 3.0E-18
score: 67.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..110
NoneNo IPR availablePANTHERPTHR33137:SF4F7H2.13 PROTEIN-RELATEDcoord: 17..104
NoneNo IPR availablePANTHERPTHR33137FAMILY NOT NAMEDcoord: 17..104
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 19..95
e-value: 8.4E-31
score: 105.7
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILYSSF47040Kix domain of CBP (creb binding protein)coord: 19..88