Carg23990 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23990
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	Cucurbita_argyrosperma_scaffold_129 : 95335 .. 97258 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGTGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGAATCTCGGCATCGAATTGTCGACAAGATGTATGATTACTTTCTTCTTCCATGCCATTAATACCCTATTTGAGAAATTTGTTTGCGCTTTTGCAACTTTTTGATTCATAGTTCGCTGCTTAGATTAGTTACTATGGGATAGTTTTTTGAATTAAGCTATGAACAGCAAAACCTTATTCTACCTTTTCACTTGAGAGTCGTGATTCGCTAACATGGTATCAAAAGTCATGGTAGGTTAGCATTTTGTTAATAAGAATCTTAATTGTCGAACAAAGAAATTGTAAGGCCTTGAGTTGTGCTAATGAGAGGATGATCCAGAAATACTCCGTTTATTGGTACGGAGAGTTTTAACCCTGTGAAAGCCATGAGACATAAGACTGCTTACAAGTGGACAATATCATAGGATGTAGAGAGTCACGGCTACATAACCTCTGGGGAGGCTCTACGGTGTAGTAGGAAAAAGGATTGTTGGCGAGATTCATGATTCCTTACAACCTAGTTGTTAAAGCAATCCGTTCACTTTTCTATTTTCTGTTTGAAGATATGGTATAGGTTAGATTTTGTGAGGGCAGTCCTATTTGTTACTTCAGGTATTATGGTAGTTAGCTTTTGTGGTGGCGGTTCATATTTGTTTCTTCAAGTATTAACCCCGCCATTGCATAAGACGTACAATGGAGAAGGATGGTTGTGTTCGAGGGCTACATAGACCTCTGGGGAGGCTCTACGGTGTAGTAGGAAAAAGGATTGTTGGGAGATTCATGATTCCTTACAAACCTAGTTTGTTAAAGTTATCCCGTTCACTTTTCTATTTCTGGTTTGAAGATATGGTAGGTTAGATTTTGTGGAGGCAGTTCCTATTTGTTTCTTCAGGTATTATGGTAGGTTAGCTTTTGTGGTGGCGGTTCCTATTTGTTTCTTCAAGTATTAACCCTCCATTGAACATAAGACGTACAATGGAGAAGGATGGTTGTGTTCGAGGGCTACATAGACCTCTGGGGAGGCTCTACGGTACATTCCTTCAAAATGCTCCTATATTAGTCAGAGAGGGGAACAAAACATTCCTCTTAAGGGTGTGAAAACCTCTCCTTAATAGATGCGTTTTAGAACTGCGAGGCAGACGGCGATACGTAACAGGCTAAAGCGGACAATATTTGTTAGTAGCGAGCTTGGACTGTTACAAATGGTATCAAAGTCAGACATCGAGAGGTGTGCCAACGAAGACGCTAGGCCCTCAAAGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAACATTCTTCATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCGTGAGGCTGACAGTGATATGTAAGGGGCCAAAGCGGACAATATCTGCTAGCGGTGAGCTTAAGCTGTTACACTAATATTTTGAATCATGGACGTGGTTTACAGCTATAGTGTTTCGCTCCCAAACAGCTCCCCGTGCTTTTGCGTTTAATAAACTTGTCAGCCACAATCTTTTCCATTTTTATGTAGAATTGAGACATTGAAGAGGCACCTTCCTGTTTCGGGTCCTGAGGGGTTGAGTGAGGTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACACTGTCGCTACCAGTCAGGTACTTGCTGCTCTCACTTGTATAAAGCCCTGATCTATTATGCTATCCACTAAATACAACACTGAGTACTCACCAATTGTATTTTGAACCTCTAATTTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGCCTGGGACGACCCCTGCATTACCATCAATGTCTGGGCCTATGGCTTCCAATCAACCTTAG

mRNA sequence

ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGTGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGAATCTCGGCATCGAATTGTCGACAAGATAATTGAGACATTGAAGAGGCACCTTCCTGTTTCGGGTCCTGAGGGGTTGAGTGAGGTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACACTGTCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGCCTGGGACGACCCCTGCATTACCATCAATGTCTGGGCCTATGGCTTCCAATCAACCTTAG

Coding sequence (CDS)

ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGTGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGAATCTCGGCATCGAATTGTCGACAAGATAATTGAGACATTGAAGAGGCACCTTCCTGTTTCGGGTCCTGAGGGGTTGAGTGAGGTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACACTGTCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGCCTGGGACGACCCCTGCATTACCATCAATGTCTGGGCCTATGGCTTCCAATCAACCTTAG

Protein sequence

MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP

Homology

[Close]

BLAST of Carg23990 vs. NCBI nr
Match: XP_022927780.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022927781.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA
Sbjct: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 111
           VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP
Sbjct: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Carg23990 vs. NCBI nr
Match: XP_023530803.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023530804.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530805.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530806.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MDSNHLGPAQGGES VDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA
Sbjct: 1   MDSNHLGPAQGGESEVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 111
           VRFEEKV+TVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP
Sbjct: 61  VRFEEKVHTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Carg23990 vs. NCBI nr
Match: XP_022989024.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita maxima] >XP_022989025.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 205.7 bits (522), Expect = 8.2e-50
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRHLPVS PEG SEVRKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHLPVSSPEGSSEVRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 111
           VRFEEKVYTVATSQSDYLRKISLRML+METK GTTPALPSMSGPMASNQP
Sbjct: 61  VRFEEKVYTVATSQSDYLRKISLRMLSMETKSGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Carg23990 vs. NCBI nr
Match: XP_022989023.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MDSNHLGP QGGESGVDAGDWRSQLQPESRHRIV+KIIETLKRH+PVSGPEGLSE+RKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 111
           VRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPSMSGP++SNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Carg23990 vs. NCBI nr
Match: XP_022989020.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989021.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989022.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 96/110 (87.27%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MDSNHLGPAQGGE  VDAGDWRSQL P+SRHRIV+ IIETLKRH+PVSGPEGLSE+RKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGDWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 111
           VRFEEKVY  ATSQSDYLRKISLRMLTMETK GTT ALPSMSGP++SNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Carg23990 vs. TAIR10
Match: AT1G15780.1 (unknown protein)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 60/105 (57.14%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKI 60
           MD+N+  P+   GE  +D GDWR+QL P+SR +IV+KI+ETLK+HLP SGPEG++E+R+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTTPALPS 101
           A RFEEK+++ A +Q+DYLRKIS++MLTMETK     G++ A+P+
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105

[Close]

BLAST of Carg23990 vs. TAIR10
Match: AT1G15790.1 (unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 7.7e-18
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 19  GDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQSDYL 78
           GDWR+Q    SR RIV+KI+ET  + LP   PEG +E+RKIAVRFEEK++  A++Q++YL
Sbjct: 5   GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79  RKISLRMLTMETK-----------PGTTPALPSMSGPMASNQP 111
           R+I ++ML METK             T P +P  S P  +N+P
Sbjct: 65  RQICMKMLNMETKSQNAAGSSSADDNTPPLVPEPSVP--NNEP 105

[Close]

BLAST of Carg23990 vs. TAIR10
Match: AT2G10440.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 20/56 (35.71%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 20 DWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIAVRFEEKVYTVATSQS 76
          DWRSQ +PE R +++ KI+E  K            ++  IA +FEE  Y++AT ++
Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEE---YKINDIASKFEENFYSIATDKT 76

[Close]

BLAST of Carg23990 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-27
Identity = 60/105 (57.14%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKI 60
           MD+N+  P+   GE  +D GDWR+QL P+SR +IV+KI+ETLK+HLP SGPEG++E+R+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYTVATSQSDYLRKISLRMLTMETK----PGTTPALPS 101
           A RFEEK+++ A +Q+DYLRKIS++MLTMETK     G++ A+P+
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPA 105

[Close]

BLAST of Carg23990 vs. TrEMBL
Match: tr|A0A1S3C0H1|A0A1S3C0H1_CUCME (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MD+N+  P QGGE G++AGDWRSQLQP+SRHRIV+KI+ETLKRHLPVSG EGLSE+RKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMA-SNQP 111
           VRFEEK++T ATSQSDYLRKISL+MLTMETK   T   P  S PM  SN+P
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNKP 111

[Close]

BLAST of Carg23990 vs. TrEMBL
Match: tr|A0A2P6QLK2|A0A2P6QLK2_ROSCH (Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075871 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.6e-31
Identity = 75/112 (66.96%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MD+N+  P QGGE  +DAGDWRSQLQ +SR RIV+KI++TLKRHLP SG EGL E++KIA
Sbjct: 1   MDTNNWRPPQGGEPAMDAGDWRSQLQQDSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTT--PALPSMSGPMASNQP 111
           VRFEEK+YT ATSQSDYLRKISL+MLTMETK   T   +LPS S   ++  P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIGTSLPSNSAGNSNRPP 112

[Close]

BLAST of Carg23990 vs. TrEMBL
Match: tr|A0A251NKZ7|A0A251NKZ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MD+N+  P Q GE+ +DAGDWRSQLQP+SR RIV+KI++TLKRHLP SG EGL E++KIA
Sbjct: 1   MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMA-SNQP 111
           VRFEEK+YT ATSQSDYLRKISL+MLTMETK   T A    S     SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRP 111

[Close]

BLAST of Carg23990 vs. TrEMBL
Match: tr|M5W7P2|M5W7P2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000277mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MD+N+  P Q GE+ +DAGDWRSQLQP+SR RIV+KI++TLKRHLP SG EGL E++KIA
Sbjct: 1   MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMA-SNQP 111
           VRFEEK+YT ATSQSDYLRKISL+MLTMETK   T A    S     SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRP 111

[Close]

BLAST of Carg23990 vs. TrEMBL
Match: tr|A0A251NJA2|A0A251NJA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPAQGGESGVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60
           MD+N+  P Q GE+ +DAGDWRSQLQP+SR RIV+KI++TLKRHLP SG EGL E++KIA
Sbjct: 1   MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61  VRFEEKVYTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMA-SNQP 111
           VRFEEK+YT ATSQSDYLRKISL+MLTMETK   T A    S     SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRP 111

The following BLAST results are available for this feature:

BLAST of Carg23990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927780.1	1.2e-53	100.00	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata...	[more]
XP_023530803.1	3.9e-52	98.18	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_022989024.1	8.2e-50	94.55	mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbi...	[more]
XP_022989023.1	2.6e-48	90.91	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
XP_022989020.1	1.2e-45	87.27	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of Carg23990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15780.1	1.6e-28	57.14	unknown protein	[more]
AT1G15790.1	7.7e-18	47.57	unknown protein	[more]
AT2G10440.1	2.8e-04	35.71	unknown protein	[more]

BLAST of Carg23990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I171\|MD15A_ARATH	3.0e-27	57.14	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Carg23990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0H1\|A0A1S3C0H1_CUCME	7.6e-36	73.87	mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A2P6QLK2\|A0A2P6QLK2_ROSCH	5.6e-31	66.96	Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=746...	[more]
tr\|A0A251NKZ7\|A0A251NKZ7_PRUPE	2.1e-30	67.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1	[more]
tr\|M5W7P2\|M5W7P2_PRUPE	2.1e-30	67.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa000277mg PE=4 SV=1	[more]
tr\|A0A251NJA2\|A0A251NJA2_PRUPE	2.1e-30	67.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G027500 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR036529	KIX_dom_sf
IPR036546	MED15_KIX

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23990-RA	Carg23990-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 19..92 e-value: 4.6E-36 score: 122.6
None	No IPR available	GENE3D	G3DSA:1.10.246.20		coord: 20..96 e-value: 7.5E-20 score: 72.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR33137:SF4	F7H2.13 PROTEIN-RELATED	coord: 17..101
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 17..101
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	SSF47040	Kix domain of CBP (creb binding protein)	coord: 19..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23990	CSPI07G05180	Wild cucumber (PI 183967)	carcpiB0769
Carg23990	CsGy7G004750	Cucumber (Gy14) v2	carcgybB0731
Carg23990	CsaV3_7G006140	Cucumber (Chinese Long) v3	carcucB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23990	Silver-seed gourd	carcarB566
Carg23990	Cucumber (Gy14) v1	carcgyB0827
Carg23990	Cucurbita maxima (Rimu)	carcmaB1028
Carg23990	Cucurbita maxima (Rimu)	carcmaB1029
Carg23990	Cucurbita moschata (Rifu)	carcmoB1000
Carg23990	Cucurbita moschata (Rifu)	carcmoB1001
Carg23990	Cucurbita pepo (Zucchini)	carcpeB1034
Carg23990	Cucurbita pepo (Zucchini)	carcpeB1035
Carg23990	Cucumber (Chinese Long) v2	carcuB0753
Carg23990	Bottle gourd (USVL1VR-Ls)	carlsiB674
Carg23990	Melon (DHL92) v3.5.1	carmeB0729
Carg23990	Melon (DHL92) v3.6.1	carmedB0740
Carg23990	Watermelon (Charleston Gray)	carwcgB0712
Carg23990	Watermelon (97103) v2	carwmbB0769
Carg23990	Wax gourd	carwgoB0868