Carg23908 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23908
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent DNA helicase 2 subunit KU80
Location	Cucurbita_argyrosperma_scaffold_252 : 183380 .. 187009 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATCGAGCAAGACCTAGCGTATCTAAAATTTTCCTTCAATTGAAGTCTATCGAGTGTATTATCTACCCGATAATTTTTTATGTATCAGAAGTTATTTAATTTTTATCCTCTTGTGATGCAGCTGATTTACAGCAAATATGATGAAGTGGGAATTGTTCTATTTGGAACCAAAGGTTTCTCCCTTTTCTTTTCTTATTTTATTTTCACAATAAAAAATTTTACGATGTCCTTCCGTCTTCGTTTGCTATGTTTCATAGTTTTTGTATTCTCGTAGAATTCATCGGCAGACATGGTTGAAATTTTCTGTATCTAGTTCGTGTATGGATTACTTAACTATGCAATGAAATTTGTAGAAACGAAAAATGAGCTAACAGAGGAAGTTGGTGGGTATCAACATGTGGTGGTTCTACAGAACATGAAGGTTGTTGATGGAGATCTTGTTGATGTTTTAAAACGACTCCCTCGAGGGACCGTTTCCGGTGATTGTATCCAAGATTTTGCAAGTTCTTTGTTCTTTTGTTTCATAGCTGCATCATTTTATAATAGATTATTGGAGGTTTCGTAAATTAAGTGTCCAAATTTTTCATACCTTTGGTTCCTTTACATGGTCGGTAGTTCTTGATGCCATAATTGTGGGAATGGATATGTTGATTAAGAAATTTGGAGAGACAGAAAAAGGAAAGAAACGCTTATGTCTTATTACAGATGCTCTATTCCCTATAAAAGAACCTTATGAAGGGACTAAAGAGGACCAAGTTTCGGCCATTGCGCAGCAGATGACAAAACACGGCATGAGAATGGATAGTGTCGTTGTGAGAAGGAGGTTCGGTCGGGATGCAGATGAGAAAATGATGGACGAGAACGACGTTCTCTTGAACATATTTTCAGAGAAAACGAATGCAAAAATGGTGTATGTGGAGAGCCCAACTTCGTTATTAGGTGCAATCCGGACTCGGAGTATATCGCCCGTGACAATTTATAGAGGCGATCTTGAAATAAGCTCCGTCATCAAGATTAAGGTAAAGTATTTAGTCTCTTACATAGCTTATTCCAAGCATTTTCAGTGACGTTCTTGAAAAATATCTGGCATATCGAGCGTTGGAACTTTTCGGTAGAAATCGAGGGTATCTTTTATCTTTTTTACACATGATTGATAGTCATCATTGATCAAAGTTCATGCTCTAATTCAATCAGGTATGGGTTTATAAGAAAACATCAGAAGAGAAGTTTCCAACTCTGAAAAGATATTCTGATAAGGCACCTTCAACTGACAAATTTGCCACACATGAAGTCAAAGTAGATTACGAGTACAAAAGCGCTGAAGACACTAGTAAGGTCGTGCCTCCAGAACATAGGATTAAAGGATATCGTTACGGACCTCAAGTGATTCCGATATCGACTGCTGAATGGGATGCAGTCAAGTTCAAACCAGAAAAGAGCGTGAAGCTTCTCGGATTTACGAATGCATCGAATATAATGCGGTAGATTCTAGCTGTTTTGAAAATTTTATACTCATAACTCGTGTTGTGAAATCTCCTGGTTTGCTTACATTTTTGTTTGAAGGCACTACTACATGAAAGACGTCAATGTCTTTATTGCTGAACCTGGCAATAAAAGAGCCATTGTTGCAGTTTCTGCACTAGCAAGAGCAATGAAGGAACTGGACAAGGTGGCGATAGTGCGATGCGTTTGGAGACAAGGACAGGGGAGCGTCGTGGTCGGTGTCTTGACACCCAACATATCGGAGAAGAATGGTATTGTATGTCTAAATACATTTTTCTGCGTACTTTCTTTTGTTATATATCGGAGAAGAATGGTATCGATGATTGTTTTTGATAGGCCGATTCATTATACTTCAATGTACTTCCCTTTGCGGAGGATGTTCGAGAATTCCAGTTTCCTTCTTTCAACAATTTTCCAGCATTGATGCAGCCGAGCGAAGAACAGCAAGAGGCAGCGGACGAATTCGTTAAGATGCTTGATCTTGCACCATCTGGACGAGAGGAAATTCTGCAACCGGATTTCACACCAAATCCTGTTCTTGAGGTATACCTTTATGTTTTTTTTGTTTTTTCGAATCATTCAGACACACAATTCACCGTGCATTCTAGTGAGAGACATTGCTCACAATTGCGTATGTGGGGGCGAGTGAGAAGGAAACGGCAACATGCTTTACTTGGTTGCGTGGAGTCCGAGCTGTAGTGAAAGACTCTCTCTCCAAAGACGCATTTAAAAACCTTGAGGGGAAAGCTCCGAAACGGGGACAAGTCCGAGATAAACCAGAAGTCGAGGACCACAACATAATCTAGAGATACTTATGCCTAGATATGAGCTCTTCGCAGATATGTAAAGCGACCATGGGTTCAAAATATTGCCTCTCATGTCTGCAGTATGTTAGATCGATGTGCCCGTGAAGATAGGAAACCAAGGCGATTCATTGTCGTCGATGTGAAGTGTGTGGGATGACAAGCGGCCTCCGTCGATTCTCGTCAATCGCATATCTCGATAGAGGATCCGACAGCGATTCCAAGCTATGCATGACCTCTCGCTCATCCAGTGATAACACAACTAGTGGAATTGCTCCATAACTGCCGTGCCAAGTGCAGAGGACAGATTACCGAGCCAGATCCCGACTTGTTGTCTCAAAACAAATCTGGTATTGGCACATTCAACAGAAGATTCGAACTCAAGGAGAATCCAAAGGTAGTTCATCATCGACTTTGTATTCAATAACTGATACATTCATGTTATCGAAATTTTGAACGTGATCCAAAATGCAGCTAAAGAAACCAAGAAGGCTATATTTACGCGAAAAACCATCCGGTTCGAGCGACAAAGAGGATAATGAAGAGATTTCTGCTCCAAAGTCAGGGTTCCTAAGATTCAGTCGTGCTCCGCTGCCAATACGTCGTAGTGAAGTCACAGGTAGTGAAAACAATCGAGATCAAACACCTCTCCAAGATATATTGAAAGGCTATAGATGTCTAGAGAGATAGATCCAGCGACCGTGGATCAAGTCTAAAGCAATCAACGGACCATGAAGGTTTAGATCGCGACAAGACAAATGGTATATACGACCTACGTCAAATGAGAAAACTCCTGTACGGACGTGTGATACGGTGATGGTTCTATCGCGAAGAAAAGCTACTTCGAGTGATCTACTAGCGCTACGCTAGCGTGCGCTTGCCGCATCTAACCCATTCACTCCAGGTTAGAACAAGTATGTTACTCTCTATCTGTCTCTTCTCTTTTTCACGACCTCAGACGCTCCGAGGAATAAAAACAACTTCCATGTTTATACAGGAACCGACGCAATTCAACGATTTCCTCCGCCATCTCTGTAAATTTTGCCTGGAAAAGAACCTCCATAGCTTCTGTGAGCTCCTTGCATTCGAACGACTTAGCTTGATCTCCAAGAAAGAAGCGGCCGACAGGTTTAATCTTCGTTTTTCTTGTTCAAACCGCCACGAAACTCCTCTTTACATTGTTGTTCTTCTGCAAAAGTTCTGAGTTTGTTTATCATATATTGAACAGTGAAGTAGCTGATGATGAAGCTAGAAGCTTTTTGGTTAAAATGGAGCCTAAATTTGAGCCTAAAATGGAACCCAAATTAGAGCAAATCTAG

mRNA sequence

ATGCTGATTTACAGCAAATATGATGAAGTGGGAATTGTTCTATTTGGAACCAAAGAAACGAAAAATGAGCTAACAGAGGAAGTTGGTGGGTATCAACATGTGGTGGTTCTACAGAACATGAAGGTTGTTGATGGAGATCTTGTTGATGTTTTAAAACGACTCCCTCGAGGGACCGTTTCCGGTGATTGTATCCAAGATTTTGCAATTCTTGATGCCATAATTGTGGGAATGGATATGTTGATTAAGAAATTTGGAGAGACAGAAAAAGGAAAGAAACGCTTATGTCTTATTACAGATGCTCTATTCCCTATAAAAGAACCTTATGAAGGGACTAAAGAGGACCAAGTTTCGGCCATTGCGCAGCAGATGACAAAACACGGCATGAGAATGGATAGTGTCGTTGTGAGAAGGAGGTTCGGTCGGGATGCAGATGAGAAAATGATGGACGAGAACGACGTTCTCTTGAACATATTTTCAGAGAAAACGAATGCAAAAATGGTGTATGTGGAGAGCCCAACTTCGTTATTAGGTGCAATCCGGACTCGGAGTATATCGCCCGTGACAATTTATAGAGGCGATCTTGAAATAAGCTCCGTCATCAAGATTAAGGTATGGGTTTATAAGAAAACATCAGAAGAGAAGTTTCCAACTCTGAAAAGATATTCTGATAAGGCACCTTCAACTGACAAATTTGCCACACATGAAGTCAAAGTAGATTACGAGTACAAAAGCGCTGAAGACACTAGTAAGGTCGTGCCTCCAGAACATAGGATTAAAGGATATCGTTACGGACCTCAAGTGATTCCGATATCGACTGCTGAATGGGATGCAGTCAAGTTCAAACCAGAAAAGAGCGTGAAGCTTCTCGGATTTACGAATGCATCGAATATAATGCGGCACTACTACATGAAAGACGTCAATGTCTTTATTGCTGAACCTGGCAATAAAAGAGCCATTGTTGCAGTTTCTGCACTAGCAAGAGCAATGAAGGAACTGGACAAGGTGGCGATAGTGCGATGCGTTTGGAGACAAGGACAGGGGAGCGTCGTGGTCGGTGTCTTGACACCCAACATATCGGAGAAGAATGGTATTGCCGATTCATTATACTTCAATGTACTTCCCTTTGCGGAGGATGTTCGAGAATTCCAGTTTCCTTCTTTCAACAATTTTCCAGCATTGATGCAGCCGAGCGAAGAACAGCAAGAGGCAGCGGACGAATTCGTTAAGATGCTTGATCTTGCACCATCTGGACGAGAGGAAATTCTGCAACCGGATTTCACACCAAATCCTGTTCTTGAGGTATACCTTTATGTTTTTTTTGTTTTTTCGAATCATTCAGACACACAATTCACCGTGCATTCTAGTGAGAGACATTGCTCACAATTGCTGATAACACAACTAGTGGAATTGCTCCATAACTGCCGTGCCAAGTGCAGAGGACAGATTACCGAGCCAGATCCCGACTTGTTGTCTCAAAACAAATCTGGTATTGGCACATTCAACAGAAGATTCGAACTCAAGGAGAATCCAAAGGTTAGAACAAGTATGTTACTCTCTATCTGTCTCTTCTCTTTTTCACGACCTCAGACGCTCCGAGGAATAAAAACAACTTCCATGTTTATACAGGAACCGACGCAATTCAACGATTTCCTCCGCCATCTCTGTAAATTTTGCCTGGAAAAGAACCTCCATAGCTTCTGTGAGCTCCTTGCATTCGAACGACTTAGCTTGATCTCCAAGAAAGAAGCGGCCGACAGTTCTGAGTTTGTTTATCATATATTGAACAGTGAAGTAGCTGATGATGAAGCTAGAAGCTTTTTGGTTAAAATGGAGCCTAAATTTGAGCCTAAAATGGAACCCAAATTAGAGCAAATCTAG

Coding sequence (CDS)

ATGCTGATTTACAGCAAATATGATGAAGTGGGAATTGTTCTATTTGGAACCAAAGAAACGAAAAATGAGCTAACAGAGGAAGTTGGTGGGTATCAACATGTGGTGGTTCTACAGAACATGAAGGTTGTTGATGGAGATCTTGTTGATGTTTTAAAACGACTCCCTCGAGGGACCGTTTCCGGTGATTGTATCCAAGATTTTGCAATTCTTGATGCCATAATTGTGGGAATGGATATGTTGATTAAGAAATTTGGAGAGACAGAAAAAGGAAAGAAACGCTTATGTCTTATTACAGATGCTCTATTCCCTATAAAAGAACCTTATGAAGGGACTAAAGAGGACCAAGTTTCGGCCATTGCGCAGCAGATGACAAAACACGGCATGAGAATGGATAGTGTCGTTGTGAGAAGGAGGTTCGGTCGGGATGCAGATGAGAAAATGATGGACGAGAACGACGTTCTCTTGAACATATTTTCAGAGAAAACGAATGCAAAAATGGTGTATGTGGAGAGCCCAACTTCGTTATTAGGTGCAATCCGGACTCGGAGTATATCGCCCGTGACAATTTATAGAGGCGATCTTGAAATAAGCTCCGTCATCAAGATTAAGGTATGGGTTTATAAGAAAACATCAGAAGAGAAGTTTCCAACTCTGAAAAGATATTCTGATAAGGCACCTTCAACTGACAAATTTGCCACACATGAAGTCAAAGTAGATTACGAGTACAAAAGCGCTGAAGACACTAGTAAGGTCGTGCCTCCAGAACATAGGATTAAAGGATATCGTTACGGACCTCAAGTGATTCCGATATCGACTGCTGAATGGGATGCAGTCAAGTTCAAACCAGAAAAGAGCGTGAAGCTTCTCGGATTTACGAATGCATCGAATATAATGCGGCACTACTACATGAAAGACGTCAATGTCTTTATTGCTGAACCTGGCAATAAAAGAGCCATTGTTGCAGTTTCTGCACTAGCAAGAGCAATGAAGGAACTGGACAAGGTGGCGATAGTGCGATGCGTTTGGAGACAAGGACAGGGGAGCGTCGTGGTCGGTGTCTTGACACCCAACATATCGGAGAAGAATGGTATTGCCGATTCATTATACTTCAATGTACTTCCCTTTGCGGAGGATGTTCGAGAATTCCAGTTTCCTTCTTTCAACAATTTTCCAGCATTGATGCAGCCGAGCGAAGAACAGCAAGAGGCAGCGGACGAATTCGTTAAGATGCTTGATCTTGCACCATCTGGACGAGAGGAAATTCTGCAACCGGATTTCACACCAAATCCTGTTCTTGAGGTATACCTTTATGTTTTTTTTGTTTTTTCGAATCATTCAGACACACAATTCACCGTGCATTCTAGTGAGAGACATTGCTCACAATTGCTGATAACACAACTAGTGGAATTGCTCCATAACTGCCGTGCCAAGTGCAGAGGACAGATTACCGAGCCAGATCCCGACTTGTTGTCTCAAAACAAATCTGGTATTGGCACATTCAACAGAAGATTCGAACTCAAGGAGAATCCAAAGGTTAGAACAAGTATGTTACTCTCTATCTGTCTCTTCTCTTTTTCACGACCTCAGACGCTCCGAGGAATAAAAACAACTTCCATGTTTATACAGGAACCGACGCAATTCAACGATTTCCTCCGCCATCTCTGTAAATTTTGCCTGGAAAAGAACCTCCATAGCTTCTGTGAGCTCCTTGCATTCGAACGACTTAGCTTGATCTCCAAGAAAGAAGCGGCCGACAGTTCTGAGTTTGTTTATCATATATTGAACAGTGAAGTAGCTGATGATGAAGCTAGAAGCTTTTTGGTTAAAATGGAGCCTAAATTTGAGCCTAAAATGGAACCCAAATTAGAGCAAATCTAG

Protein sequence

MLIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSGDCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQQMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRTRSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYEYKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEKNGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEILQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSMLLSICLFSFSRPQTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAADSSEFVYHILNSEVADDEARSFLVKMEPKFEPKMEPKLEQI

Homology

[Close]

BLAST of Carg23908 vs. NCBI nr
Match: XP_022934682.1 (ATP-dependent DNA helicase 2 subunit KU80 [Cucurbita moschata])

HSP 1 Score: 949.5 bits (2453), Expect = 5.7e-273
Identity = 522/688 (75.87%), Postives = 539/688 (78.34%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG
Sbjct: 37  LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ
Sbjct: 97  D------FLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE
Sbjct: 217 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY
Sbjct: 277 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEPGNKRAIVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 YMKDVNVFIAEPGNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI
Sbjct: 397 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE        F  H + +    ++        +  L   L         +
Sbjct: 457 LQPDFTPNPVLE-------RFYRHLELKSKDPAA-------AVPPLDATLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVR---------------------------- 541
           ITEPDPDLLSQNKSGIGTF+RRFELKENPK++                            
Sbjct: 517 ITEPDPDLLSQNKSGIGTFDRRFELKENPKLKKPRRLYLREKPSGSSDKEDNEEISAQIV 576

Query: 542 ----TSMLLSICLFSFSRP----------------------------------------- 601
                + L+ +     S P                                         
Sbjct: 577 VSAANTRLVKVEKIGDSTPLQDFEAMMSRRDSPEWINKAINEMKNKIFDLVENSCDGDNY 636

Query: 602 ----QTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
               + L  ++   +  QEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA
Sbjct: 637 PKALEYLLALRKGCIIEQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 686

[Close]

BLAST of Carg23908 vs. NCBI nr
Match: XP_023540876.1 (ATP-dependent DNA helicase 2 subunit KU80 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 941.4 bits (2432), Expect = 1.5e-270
Identity = 520/688 (75.58%), Postives = 539/688 (78.34%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG
Sbjct: 37  LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQV+AIAQ
Sbjct: 97  D------FLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVTAIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE
Sbjct: 217 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY
Sbjct: 277 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           +MKDVNVFIAEPGNKRAIVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 FMKDVNVFIAEPGNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           NGIADSLYFNVLPFAEDVREFQFPSF+NFPALMQPSEEQQEAADEFVKMLDLAPSGREEI
Sbjct: 397 NGIADSLYFNVLPFAEDVREFQFPSFSNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE        F  H + +    ++        +  L   L         +
Sbjct: 457 LQPDFTPNPVLE-------RFYRHLELKSKDPAA-------AVPPLDATLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSMLL----------------------- 541
           ITEPDPDLLSQNKS IGTF+RRFELKENPK++    L                       
Sbjct: 517 ITEPDPDLLSQNKSAIGTFHRRFELKENPKLKKPRRLYLREKRSGSSDKEDNEEISAQIV 576

Query: 542 ----------------SICLFSF-----------------------------------SR 601
                           S  L  F                                   + 
Sbjct: 577 VSAANTSVVKVEKIGDSTPLQDFEAMMSRRDSPEWINKAINGMKNKIFDLVENSYDGDNY 636

Query: 602 PQTLR---GIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
           P+ L+    ++   +  QEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA
Sbjct: 637 PKALKYLLALRKGCIIEQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 686

[Close]

BLAST of Carg23908 vs. NCBI nr
Match: XP_023540878.1 (ATP-dependent DNA helicase 2 subunit KU80 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 941.4 bits (2432), Expect = 1.5e-270
Identity = 520/688 (75.58%), Postives = 539/688 (78.34%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG
Sbjct: 20  LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 79

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQV+AIAQ
Sbjct: 80  D------FLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVTAIAQ 139

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT
Sbjct: 140 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 199

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE
Sbjct: 200 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 259

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY
Sbjct: 260 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 319

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           +MKDVNVFIAEPGNKRAIVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 320 FMKDVNVFIAEPGNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 379

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           NGIADSLYFNVLPFAEDVREFQFPSF+NFPALMQPSEEQQEAADEFVKMLDLAPSGREEI
Sbjct: 380 NGIADSLYFNVLPFAEDVREFQFPSFSNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 439

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE        F  H + +    ++        +  L   L         +
Sbjct: 440 LQPDFTPNPVLE-------RFYRHLELKSKDPAA-------AVPPLDATLQ--------K 499

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSMLL----------------------- 541
           ITEPDPDLLSQNKS IGTF+RRFELKENPK++    L                       
Sbjct: 500 ITEPDPDLLSQNKSAIGTFHRRFELKENPKLKKPRRLYLREKRSGSSDKEDNEEISAQIV 559

Query: 542 ----------------SICLFSF-----------------------------------SR 601
                           S  L  F                                   + 
Sbjct: 560 VSAANTSVVKVEKIGDSTPLQDFEAMMSRRDSPEWINKAINGMKNKIFDLVENSYDGDNY 619

Query: 602 PQTLR---GIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
           P+ L+    ++   +  QEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA
Sbjct: 620 PKALKYLLALRKGCIIEQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 669

[Close]

BLAST of Carg23908 vs. NCBI nr
Match: XP_022974163.1 (ATP-dependent DNA helicase 2 subunit KU80 [Cucurbita maxima])

HSP 1 Score: 934.5 bits (2414), Expect = 1.9e-268
Identity = 512/688 (74.42%), Postives = 534/688 (77.62%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG
Sbjct: 37  LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ
Sbjct: 97  D------FLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHGMRMDSVVVRRRF RDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGMRMDSVVVRRRFSRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSISPVTIYRGDLEISSV+K+KVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE
Sbjct: 217 RSISPVTIYRGDLEISSVVKMKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKS EDTSKVVPPEHRIKGYRYGPQVIPIS AEWDAVKFKPEKSVKLLGFTNASNIMRHY
Sbjct: 277 YKSVEDTSKVVPPEHRIKGYRYGPQVIPISAAEWDAVKFKPEKSVKLLGFTNASNIMRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEPGNKRAIVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 YMKDVNVFIAEPGNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEA DEFVKMLDLAPSGREEI
Sbjct: 397 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAVDEFVKMLDLAPSGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE        F  H + +    ++        +  L   L         +
Sbjct: 457 LQPDFTPNPVLE-------RFYRHLELKSKDPAA-------AVPPLDTTLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVR---------------------------- 541
           IT+PDPDLLSQNKS IGTF+RRFELKENPK++                            
Sbjct: 517 ITKPDPDLLSQNKSAIGTFHRRFELKENPKLKKPRRLYLREKPSGSSDKEDNEEISAQIV 576

Query: 542 ----TSMLLSICLFSFSRP----------------------------------------- 601
                + ++ +     S P                                         
Sbjct: 577 VSAANTSVVKVEKIGDSTPLQDFEAMMSRRDNPEWINKAINGMKNKIFDLVENSCDGDNY 636

Query: 602 ----QTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
               + L  ++   +  QEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERL+LISKKEAA
Sbjct: 637 PKALEYLLALRKGCIIEQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLNLISKKEAA 686

[Close]

BLAST of Carg23908 vs. NCBI nr
Match: XP_022147110.1 (ATP-dependent DNA helicase 2 subunit KU80 [Momordica charantia])

HSP 1 Score: 872.5 bits (2253), Expect = 8.8e-250
Identity = 479/688 (69.62%), Postives = 517/688 (75.15%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIY+KYDEVGIVLFGT++TKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLK+LPRGTVSG
Sbjct: 37  LIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKQLPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIK+PYEGTKEDQV+ IAQ
Sbjct: 97  D------FLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKDPYEGTKEDQVTTIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHGMRMDSVVVR RFG DADEK+MDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGMRMDSVVVRGRFGHDADEKIMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSI+PVTI+RG LEISS+IKIKVWVYKKTSEEKFPTLKRYSDKAP TDKFATHEVKVDYE
Sbjct: 217 RSIAPVTIFRGVLEISSIIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAED SKVVPPEHRIKGYRYGPQV+PISTAEWDAVKFKPEKSVKLLGFTNASNI+RHY
Sbjct: 277 YKSAEDPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNILRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEP NKRAIVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 YMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +GIADSLYFNVLPFAEDVREFQF SF+NFPA MQPSEEQQEAAD+ VKMLDLAPSGREEI
Sbjct: 397 DGIADSLYFNVLPFAEDVREFQFSSFSNFPASMQPSEEQQEAADDLVKMLDLAPSGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE +     + S   D                +  L   L         +
Sbjct: 457 LQPDFTPNPVLERFYRHLELKSKDPDA--------------AVPPLDVTLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSM-------------------LLSICL 541
           ITEPDPDL SQ KS I TF+RRFELKENPK++ S                    + +  +
Sbjct: 517 ITEPDPDLFSQIKSIIDTFHRRFELKENPKLKKSRRRFLREKPSGSSEKEDNEDIPAQIV 576

Query: 542 FSFSRPQTLR-------------------------------------------------- 601
            S + P  ++                                                  
Sbjct: 577 DSAANPSAVKVEKIGDSTPLQDFEAMMSRRDSPEWISKAINGMKNKIFDLVENSCDGDNY 636

Query: 602 --------GIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
                    ++   +  QEP QFNDFL HLCKFCL+ NLHSFCE LA ++L+LISK EA 
Sbjct: 637 PKALEYLLALRKGCIIEQEPKQFNDFLHHLCKFCLKNNLHSFCEFLASKQLTLISKVEAV 686

[Close]

BLAST of Carg23908 vs. TAIR10
Match: AT1G48050.1 (Ku80 family protein)

HSP 1 Score: 594.7 bits (1532), Expect = 6.4e-170
Identity = 323/677 (47.71%), Postives = 429/677 (63.37%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIY+KYDEVGIV+FGT+ET NEL  E+GGY++V VL+N++VVD    + +K+LPRGTV+G
Sbjct: 37  LIYNKYDEVGIVVFGTEETGNELAREIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDA+IVGMDMLIK +G   KGKKR+CLIT+A  P K+P+EGTK+DQVS IA 
Sbjct: 97  D------FLDALIVGMDMLIKMYGNAHKGKKRMCLITNAACPTKDPFEGTKDDQVSTIAM 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           +M   G++M+S+V+R     DA E++++END LL +FS    AK V V+SP SLLG+++T
Sbjct: 157 KMAAEGIKMESIVMRSNLSGDAHERVIEENDHLLTLFSSNAIAKTVNVDSPLSLLGSLKT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           R ++PVT++RGDLEI+  +KIKVWVYKK +EE+ PTLK YSDKAP TDKFA HEVKVDY+
Sbjct: 217 RRVAPVTLFRGDLEINPTMKIKVWVYKKVAEERLPTLKMYSDKAPPTDKFAKHEVKVDYD 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YK   ++++V+ PE RIKG+RYGPQVIPIS  + + +KFK +K +KLLGFT ASNI+RHY
Sbjct: 277 YKVTAESTEVIAPEERIKGFRYGPQVIPISPDQIETLKFKTDKGMKLLGFTEASNILRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVN+ + +P  +++++AVSA+AR MKE +KVAIVRCVWR GQG+VVVGVLTPN+SE+
Sbjct: 337 YMKDVNIVVPDPSKEKSVLAVSAIAREMKETNKVAIVRCVWRNGQGNVVVGVLTPNVSER 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +   DS YFNVLPFAEDVREF FPSFN  P+  +P E+QQ  AD  VKMLDLAPS  EE+
Sbjct: 397 DDTPDSFYFNVLPFAEDVREFPFPSFNKLPSSWKPDEQQQAVADNLVKMLDLAPSAEEEV 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           L+PD TPNPVL+ + Y +    + S T  T+   +    +L+                  
Sbjct: 457 LKPDLTPNPVLQRF-YEYLELKSKS-TDATLPPMDGTFKRLM------------------ 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTS-------------------------- 541
             E DP+L S NKS + TF   FE+KENPK++ +                          
Sbjct: 517 --EQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNRMITYDAKE 576

Query: 542 ----------------------------------------MLLSICLFSFSRP-QTLRGI 601
                                                    L+  C     +  + +  +
Sbjct: 577 NKIDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLVENCTDEGDKALECVLAL 636

Query: 602 KTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAADSSEFVYHIL 612
           +   +  QEP QFN+FL HL K C E+NL    E    ++++LI K EAAD         
Sbjct: 637 RKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKKITLIPKSEAAD--------- 675

[Close]

BLAST of Carg23908 vs. Swiss-Prot
Match: sp|Q75IP6|KU80_ORYSJ (ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza sativa subsp. japonica OX=39947 GN=KU80 PE=1 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 6.8e-169
Identity = 332/690 (48.12%), Postives = 433/690 (62.75%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           L+Y++ DE+G+VLFGTKET NEL +E+GGY+HVVV +++KVVD +  + L+ LPRGT  G
Sbjct: 37  LVYNRSDEIGVVLFGTKETSNELAKELGGYKHVVVARDIKVVDEETTNALQNLPRGTSPG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAI+VG+DMLI+KFG   KGK+R+CL+TDA  P+++P +GTK+DQV  IA 
Sbjct: 97  D------FLDAIVVGLDMLIRKFGNI-KGKQRMCLVTDAQHPLRDPPQGTKKDQVDTIAD 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QM +H ++MD ++ R    R     +MDEND LL  F E++  K+V+V+SPTSLLGA+RT
Sbjct: 157 QMKRHEIKMDCIIFRESGVR--HNAVMDENDQLLYHFRERSVTKVVHVDSPTSLLGALRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           R++ PVT++RGDLE+SS  KIKVWVYKKTSEEKFPTLK+YSDKAP++DKFA+HEVKVDYE
Sbjct: 217 RNVLPVTVFRGDLEVSSSFKIKVWVYKKTSEEKFPTLKKYSDKAPASDKFASHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKS  +   VVPP+ RIKGY YGPQV+PIS+AEW+AVKFKPEK VKLLGFT+ S+I RHY
Sbjct: 277 YKSVLEPDTVVPPDQRIKGYLYGPQVVPISSAEWEAVKFKPEKGVKLLGFTDRSSISRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           +MKDV  F+ EPGN +A+ AVSALARAM E++KVAI+RCVWRQGQG+V +GVLTPNIS  
Sbjct: 337 FMKDVFSFVPEPGNTKAVAAVSALARAMSEMNKVAILRCVWRQGQGNVALGVLTPNISSA 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
             + DS YFN+LPFAED+REFQF SF++ P+  QP++EQQEAAD  VKMLDLAP GREEI
Sbjct: 397 KNVLDSFYFNILPFAEDIREFQFRSFSSLPSSSQPTKEQQEAADNLVKMLDLAPPGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           L+PDFTPNP+LE +     + S   D                             KC  +
Sbjct: 457 LKPDFTPNPMLERFYRYLDLKSKQPDANVPPLD----------------------KCLKK 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPK------------------------------ 541
           ITEPDPD++      I      FELKENPK                              
Sbjct: 517 ITEPDPDVIDYQAPLIKKLGNVFELKENPKKKKARTQDRLTYTGADDQAKLLEEPSAEKV 576

Query: 542 -------------------------------------VRTSM------LLSICLFSFSRP 601
                                                V+T++      + ++   S  R 
Sbjct: 577 GVSEALYPPKKKAGEIGDHNPVQDFEAMLTQRSSSTWVQTAIEEMQKYITALIQDSCDRD 636

Query: 602 ------QTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKE 613
                 + L  ++   +  QEP ++N F+  LC+         F +LL+ ++ SLISK+E
Sbjct: 637 NHQKALECLVALRKACIIEQEPNEYNGFVTKLCQKFRPAGDKIFLQLLSSKKASLISKEE 685

[Close]

BLAST of Carg23908 vs. Swiss-Prot
Match: sp|Q9FQ09|KU80_ARATH (ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana OX=3702 GN=KU80 PE=1 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 1.2e-168
Identity = 323/677 (47.71%), Postives = 429/677 (63.37%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIY+KYDEVGIV+FGT+ET NEL  E+GGY++V VL+N++VVD    + +K+LPRGTV+G
Sbjct: 37  LIYNKYDEVGIVVFGTEETGNELAREIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDA+IVGMDMLIK +G   KGKKR+CLIT+A  P K+P+EGTK+DQVS IA 
Sbjct: 97  D------FLDALIVGMDMLIKMYGNAHKGKKRMCLITNAACPTKDPFEGTKDDQVSTIAM 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           +M   G++M+S+V+R     DA E++++END LL +FS    AK V V+SP SLLG+++T
Sbjct: 157 KMAAEGIKMESIVMRSNLSGDAHERVIEENDHLLTLFSSNAIAKTVNVDSPLSLLGSLKT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           R ++PVT++RGDLEI+  +KIKVWVYKK +EE+ PTLK YSDKAP TDKFA HEVKVDY+
Sbjct: 217 RRVAPVTLFRGDLEINPTMKIKVWVYKKVAEERLPTLKMYSDKAPPTDKFAKHEVKVDYD 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YK   ++++V+ PE RIKG+RYGPQVIPIS  + + +KFK +K +KLLGFT ASNI+RHY
Sbjct: 277 YKVTAESTEVIAPEERIKGFRYGPQVIPISPDQIETLKFKTDKGMKLLGFTEASNILRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVN+ + +P  +++++AVSA+AR MKE +KVAIVRCVWR GQG+VVVGVLTPN+SE+
Sbjct: 337 YMKDVNIVVPDPSKEKSVLAVSAIAREMKETNKVAIVRCVWRNGQGNVVVGVLTPNVSER 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +   DS YFNVLPFAEDVREF FPSFN  P+  +P E+QQ  AD  VKMLDLAPS  EE+
Sbjct: 397 DDTPDSFYFNVLPFAEDVREFPFPSFNKLPSSWKPDEQQQAVADNLVKMLDLAPSAEEEV 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           L+PD TPNPVL+ + Y +    + S T  T+   +    +L+                  
Sbjct: 457 LKPDLTPNPVLQRF-YEYLELKSKS-TDATLPPMDGTFKRLM------------------ 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTS-------------------------- 541
             E DP+L S NKS + TF   FE+KENPK++ +                          
Sbjct: 517 --EQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNRMITYDAKE 576

Query: 542 ----------------------------------------MLLSICLFSFSRP-QTLRGI 601
                                                    L+  C     +  + +  +
Sbjct: 577 NKIDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLVENCTDEGDKALECVLAL 636

Query: 602 KTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAADSSEFVYHIL 612
           +   +  QEP QFN+FL HL K C E+NL    E    ++++LI K EAAD         
Sbjct: 637 RKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKKITLIPKSEAAD--------- 675

[Close]

BLAST of Carg23908 vs. Swiss-Prot
Match: sp|Q54LY5|XRCC5_DICDI (X-ray repair cross-complementing protein 5 OS=Dictyostelium discoideum OX=44689 GN=ku80 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.2e-52
Identity = 143/487 (29.36%), Postives = 244/487 (50.10%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIY K D++G+VL GTK TKN L ++  GYQH+ V+ +++    + +  L+ L  G   G
Sbjct: 51  LIYGKKDQLGLVLIGTKGTKNNLQDD--GYQHITVVSDIEEPSIETLKYLENLAPGESKG 110

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D      ++D++IV MDMLI+K  E +K +KR+ L+T+A  PI         DQ   I  
Sbjct: 111 D------VIDSLIVAMDMLIRK-TENKKYQKRIFLVTNARDPINTEDLSIVRDQFKKIDV 170

Query: 122 QMTKHGMRMDSVVVRRRF---GRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGA 181
           ++   G+     +          + ++ + ++N++ L  F+E  +  +V V+    ++  
Sbjct: 171 KLNIIGVDFLEEIEENNMDTSNNNKNKSLKEKNEIFLREFAESVDGVLVPVKQALEMMSF 230

Query: 182 IRTRSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKF------- 241
            R++S+   T +RG LEI+  +KI VW Y K  ++  P+LK+                  
Sbjct: 231 FRSQSVMTRTSFRGALEITPELKIPVWGYLKMKQQLLPSLKKIXXXXXXXXXXXXXXXXX 290

Query: 242 -------------------ATHEVKVDYEYKSAEDTSKVVPPEHRIKGYRYGPQVIPIST 301
                               T +V  +  Y S  D    +     +KGY+YG  +IP S 
Sbjct: 291 XXXXXXXXXXXXXXXXXPNITLDVNQEVSYYSITDPDNEILKPDLLKGYKYGKSLIPFSK 350

Query: 302 AEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPGNKRAIVAVSALARAMKEL 361
            + D +K+   K +K++GFT+  +I  +Y M +  VF+++PG+K++  A+S+   A+ E 
Sbjct: 351 IDEDQLKYSSSKCLKVVGFTDRKSIPIYYNMGNTEVFVSQPGDKQSEEALSSFIHALVET 410

Query: 362 DKVAIVRCVWRQGQGSVVVGVLTPNISEKNGIADSLYFNVLPFAEDVREFQFPSFNNFPA 421
           D+V +VR V +   GS  +G + P++         LY+N LP A+D+R++QFP  +    
Sbjct: 411 DQVMVVRYV-KTMNGSPYLGYMIPHVKSD---YVCLYYNHLPLADDIRQYQFPPISPKNP 470

Query: 422 LMQ----PSEEQQEAADEFVKMLDLAPSGREE------ILQPDFTPNPVLEVYLYVFFVF 450
           L +    P+ EQ EA  + +  +DL  S  +E      +L+P FT NP+L+ +       
Sbjct: 471 LTRKSNIPNAEQLEATQQLIDSMDLMKSEFDEDGDPIQMLKPRFTYNPLLQHFYQCLHHR 524

[Close]

BLAST of Carg23908 vs. Swiss-Prot
Match: sp|P27641|XRCC5_MOUSE (X-ray repair cross-complementing protein 5 OS=Mus musculus OX=10090 GN=Xrcc5 PE=1 SV=4)

HSP 1 Score: 117.5 bits (293), Expect = 5.4e-25
Identity = 118/450 (26.22%), Postives = 205/450 (45.56%), Query Frame = 0


Query: 8   DEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSGDCIQDF 67
           DE+ +VL+GT  T N L  +   YQ++ V +++ + D DL++ +     G       Q  
Sbjct: 52  DEIALVLYGTDGTDNALAGK-DQYQNITVCRHLMLPDFDLLEDI-----GNKIQPSSQQA 111

Query: 68  AILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQQMTKHG 127
             LDA+IV MD++ ++    + GKK + + TD   P         +DQ+  I   + K G
Sbjct: 112 DFLDALIVCMDLIQRETIGKKFGKKHIEVFTDLSSPF-------SQDQLDVIICNLKKSG 171

Query: 128 MRMDSVV--VRRRFGRDADEKMMDEN-DVLLNIFSEK--TNAKMVYVESPTSLLGAIR-- 187
           + +   +     + G   +   +D   D L   F +K  T  +   +   T ++ ++   
Sbjct: 172 ISLQFFLPFPIDKNGEPGERGDLDSGLDHLKPSFPQKGLTEQQKEGIRMVTRVMLSLEGE 231

Query: 188 ---------TRSISPVTIYRG----------DLEISSVIKIKVWVYKKTSEEKFPTLKRY 247
                    + S+  + +++            L I   + IK+  YK   +EKF    + 
Sbjct: 232 DGLDEIYSFSESLRQLCVFKKIERRSMPWPCQLTIGPNLSIKIVAYKSIVQEKF----KK 291

Query: 248 SDKAPSTDKFATHEVKVDYEYKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFK 307
           S            +++ +  Y   +D    V  E  I+GYRYG  +IP S  + + +K+K
Sbjct: 292 SWVVVDARTLKKEDIQKETVYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVDEEQMKYK 351

Query: 308 PE-KSVKLLGFTNASNIMRHYYM--KDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIV 367
            E K   +LGF  +S + R ++M  + + VF A+  ++ A VA+S+L  A+ EL+ VAIV
Sbjct: 352 SEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFAAK-DDEAAAVALSSLVHALDELNMVAIV 411

Query: 368 RCVWRQGQGSVVVGVLTPNISEKNGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSE 427
           R  + + + +  VGV  P I +     + L +  LPF ED+R++ F S  N      P+E
Sbjct: 412 RYAYDK-RSNPQVGVAFPYIKD---AYECLVYVQLPFMEDLRQYMFSSLKN-NKKCTPTE 471

Query: 428 EQQEAADEFVKMLDLAPSGREEILQPDFTP 429
            Q  A D+ +  + L     EE +  D  P
Sbjct: 472 AQLSAIDDLIDSMSLVKKNEEEDIVEDLFP 478

[Close]

BLAST of Carg23908 vs. Swiss-Prot
Match: sp|Q2H6C5|KU80_CHAGB (ATP-dependent DNA helicase II subunit 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=KU80 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-21
Identity = 120/472 (25.42%), Postives = 206/472 (43.64%), Query Frame = 0


Query: 10  VGIVLFGTKETKN-ELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSGDCIQDFA 69
           +G+V   T+ET N + +E + GY+H+ VLQ++    G +     R  R ++         
Sbjct: 53  LGVVGLNTEETNNAQDSEGLEGYEHISVLQDI----GPMTMTQLRELRSSIQTSHTYGGD 112

Query: 70  ILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQQMTKHGM 129
            +  I+V + M I+ F +  K  +R+ L+T+   PI +    + ED    +A ++    +
Sbjct: 113 AISGIVVALAM-IELFTKKLKYNRRIILVTNGESPIDDE---SSED----VANRLNYSNI 172

Query: 130 RMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMV---------YVESPTSLLGAI 189
            +  +V+   F  DAD    +E+       +EKT  K+V          ++     L   
Sbjct: 173 EL--IVIGVDFD-DADYGFKEEDKSKGKARNEKTLRKLVEQCNNGVFGTMQQAVEELAIP 232

Query: 190 RTRSISPVTIYRGDLEI------SSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFAT 249
           R + + P   Y G L +       S + I V  Y KT     P        +       +
Sbjct: 233 RIKPVRPFKAYDGALTLGDPEKYKSALSIHVERYFKTKRAPAPPASTVVVNSEPGGASQS 292

Query: 250 HEVKVDYEYKSAE-------DTSKVVPP-----------EHRIKGYRYGPQVIPISTAEW 309
             +  D E   AE        T +V  P           E   KGY+YG  V+P S +++
Sbjct: 293 ETLNEDTEMGDAEFSGVKHMRTYRVNDPDAPGGKRDVEFEDLAKGYQYGRTVVPFSESDF 352

Query: 310 DAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPGNKRAIVAVSALARAMKELDKV 369
              K + +KS  +LGF   S+      + +  + +A+  N+ A + +SAL  A+ EL+  
Sbjct: 353 SITKLETKKSFTILGFIPFSSYNPFLNLGETGIVVAQKHNEEAELGLSALIHALHELESY 412

Query: 370 AIVRCVWRQGQGSVVVGVLTPNISEKNGIADSLYFNVLPFAEDVREFQFPSFNNFPAL-- 429
           A+ R V + G    +V +L PN + ++   + LY   LPFAED+R +QFP  +    +  
Sbjct: 413 AVARYVQKDGAQPQLV-LLKPNPAIEDDF-ECLYDVPLPFAEDLRSYQFPPLDKVLTVTG 472

Query: 430 -------MQPSEEQQEAADEFVKMLDLAPSGREEILQP------DFTPNPVL 433
                  + PSE+ ++A  +FV  +DL+    +E  +P      D T NP +
Sbjct: 473 NIIKEHRLLPSEDLKQAMSDFVDAMDLSGFDVDEDGKPTEYAPIDETYNPTI 507

[Close]

BLAST of Carg23908 vs. TrEMBL
Match: tr|A0A1S4DSG5|A0A1S4DSG5_CUCME (ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis melo OX=3656 GN=LOC103483351 PE=3 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 7.1e-248
Identity = 471/688 (68.46%), Postives = 518/688 (75.29%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           L+Y+KYDEVGIVLFGT++TKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLK++PRGTVSG
Sbjct: 20  LLYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKQIPRGTVSG 79

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAII+GMDMLIKKFGETE+GKKRLCL+TDALFPIKEPYEGTKEDQV+ IAQ
Sbjct: 80  D------FLDAIIIGMDMLIKKFGETERGKKRLCLVTDALFPIKEPYEGTKEDQVTTIAQ 139

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHG++MDSVVVR RFG+DA+EK M+END+LLNIFS+KTNAKMVYVESPTSLLGAIRT
Sbjct: 140 QMTKHGIKMDSVVVRGRFGQDANEKTMNENDLLLNIFSQKTNAKMVYVESPTSLLGAIRT 199

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSI+PVTI+RGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAP TDKFATHEVKVDYE
Sbjct: 200 RSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPLTDKFATHEVKVDYE 259

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAE+ SKVVPPEHRIKGYRYGPQV+PISTAEWDAVKFK EKSVKLLGFTNASNIMRHY
Sbjct: 260 YKSAEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKTEKSVKLLGFTNASNIMRHY 319

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEPGNKR+IVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 320 YMKDVNVFIAEPGNKRSIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 379

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +GIADSL+FNVLPFAEDVREFQFPSF+N PA MQPSEEQQEAAD+FVKMLDLAP GREEI
Sbjct: 380 DGIADSLFFNVLPFAEDVREFQFPSFSNLPAFMQPSEEQQEAADDFVKMLDLAPDGREEI 439

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE +     + S   D                +  L   L         +
Sbjct: 440 LQPDFTPNPVLERFYRHLELKSKDPDA--------------AVPPLDGTLQ--------K 499

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSM------------------------- 541
           ITEPDPDL SQNK+ I TF+RRFELKENPK++ S                          
Sbjct: 500 ITEPDPDLFSQNKAVINTFHRRFELKENPKLKKSRRHYLREKASGSSDKEDNEEISAQIV 559

Query: 542 -------LLSICLFSFSRP----------------------------------------- 601
                  ++ +     S P                                         
Sbjct: 560 ESVANMPIVKVEKVGDSTPLEDFEAMMSRRDSPEWISKAINGMKSKIFDLIENSSDGDSY 619

Query: 602 ----QTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
               + LR ++   +  QEP QFNDFLRHL  FC EKNLH+FCE LA +++SLISK+EAA
Sbjct: 620 TKAIEYLRALRKGCIIEQEPKQFNDFLRHLRNFCPEKNLHTFCEFLASQQISLISKEEAA 669

[Close]

BLAST of Carg23908 vs. TrEMBL
Match: tr|A0A1S3AWC4|A0A1S3AWC4_CUCME (ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis melo OX=3656 GN=LOC103483351 PE=3 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 7.1e-248
Identity = 471/688 (68.46%), Postives = 518/688 (75.29%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           L+Y+KYDEVGIVLFGT++TKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLK++PRGTVSG
Sbjct: 37  LLYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKQIPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAII+GMDMLIKKFGETE+GKKRLCL+TDALFPIKEPYEGTKEDQV+ IAQ
Sbjct: 97  D------FLDAIIIGMDMLIKKFGETERGKKRLCLVTDALFPIKEPYEGTKEDQVTTIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHG++MDSVVVR RFG+DA+EK M+END+LLNIFS+KTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGIKMDSVVVRGRFGQDANEKTMNENDLLLNIFSQKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSI+PVTI+RGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAP TDKFATHEVKVDYE
Sbjct: 217 RSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPLTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAE+ SKVVPPEHRIKGYRYGPQV+PISTAEWDAVKFK EKSVKLLGFTNASNIMRHY
Sbjct: 277 YKSAEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKTEKSVKLLGFTNASNIMRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEPGNKR+IVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 YMKDVNVFIAEPGNKRSIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +GIADSL+FNVLPFAEDVREFQFPSF+N PA MQPSEEQQEAAD+FVKMLDLAP GREEI
Sbjct: 397 DGIADSLFFNVLPFAEDVREFQFPSFSNLPAFMQPSEEQQEAADDFVKMLDLAPDGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE +     + S   D                +  L   L         +
Sbjct: 457 LQPDFTPNPVLERFYRHLELKSKDPDA--------------AVPPLDGTLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSM------------------------- 541
           ITEPDPDL SQNK+ I TF+RRFELKENPK++ S                          
Sbjct: 517 ITEPDPDLFSQNKAVINTFHRRFELKENPKLKKSRRHYLREKASGSSDKEDNEEISAQIV 576

Query: 542 -------LLSICLFSFSRP----------------------------------------- 601
                  ++ +     S P                                         
Sbjct: 577 ESVANMPIVKVEKVGDSTPLEDFEAMMSRRDSPEWISKAINGMKSKIFDLIENSSDGDSY 636

Query: 602 ----QTLRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
               + LR ++   +  QEP QFNDFLRHL  FC EKNLH+FCE LA +++SLISK+EAA
Sbjct: 637 TKAIEYLRALRKGCIIEQEPKQFNDFLRHLRNFCPEKNLHTFCEFLASQQISLISKEEAA 686

[Close]

BLAST of Carg23908 vs. TrEMBL
Match: tr|A0A0A0L4D8|A0A0A0L4D8_CUCSA (ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis sativus OX=3659 GN=Csa_3G126130 PE=3 SV=1)

HSP 1 Score: 847.8 bits (2189), Expect = 1.5e-242
Identity = 468/688 (68.02%), Postives = 513/688 (74.56%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           L+Y+KYDEVGIVLFGT++TKNELTEEVGGYQHVVVLQ MKVVDGDLVDVLK +PRGTVSG
Sbjct: 37  LLYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQKMKVVDGDLVDVLKHIPRGTVSG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMDMLIKKFGETE+GKKRLCL+TDALFPIKEPYEGTKEDQV+ IAQ
Sbjct: 97  D------FLDAIIVGMDMLIKKFGETERGKKRLCLVTDALFPIKEPYEGTKEDQVTTIAQ 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QMTKHG+RMDSVVVR RFG+DA EK M+END+LLNIFS KTNAKMVYVESPTSLLGAIRT
Sbjct: 157 QMTKHGIRMDSVVVRGRFGQDAIEKTMNENDLLLNIFSRKTNAKMVYVESPTSLLGAIRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           RSI+PVTI+RGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAP TDKFATHEVKVDYE
Sbjct: 217 RSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPLTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKSAE+ SKVVPPE RIKGYRYGPQV+PISTAEWDAVKFK EKSVKLLGFTNA +IMRHY
Sbjct: 277 YKSAEEPSKVVPPELRIKGYRYGPQVVPISTAEWDAVKFKTEKSVKLLGFTNAFHIMRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIAEPGNKR+IVAVSALARAMKE+DKVAIVRCVWRQGQGSVVVGVLTPNISEK
Sbjct: 337 YMKDVNVFIAEPGNKRSIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISEK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +GIADSL+FNVLPFAEDVREFQFPSF+N PALMQPSEEQQEAAD+FVKMLDLAP GREEI
Sbjct: 397 DGIADSLFFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQEAADDFVKMLDLAPDGREEI 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQPDFTPNPVLE +     V S   D                +  L   L         +
Sbjct: 457 LQPDFTPNPVLERFYRHLEVKSKDPDA--------------AVPPLDGTLQ--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTS------------------------ML 541
           ITEPDPDL SQN+S I TF++RFELKENPK++ S                        ++
Sbjct: 517 ITEPDPDLFSQNQSVINTFHKRFELKENPKLKKSRRHYLREKASGSSDKEDNEEISAQIV 576

Query: 542 LSIC------------------------------------------LFSFSRPQT----- 601
            S+                                           +F   +  +     
Sbjct: 577 ESVANMPTVKVEKIGDTTPLEDFEAMMSRRDSPEWISKAISGMMSKIFDLIKNSSDGHSY 636

Query: 602 ------LRGIKTTSMFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 613
                 LR ++   +  QEP QFNDFLRHL  F  EKNLH+FCE LA +++SLISK+EAA
Sbjct: 637 TKAIEYLRALRKGCIIEQEPKQFNDFLRHLRNFYPEKNLHTFCEFLASQQISLISKEEAA 686

[Close]

BLAST of Carg23908 vs. TrEMBL
Match: tr|A0A2P4LKH2|A0A2P4LKH2_QUESU (ATP-dependent DNA helicase 2 subunit KU80 OS=Quercus suber OX=58331 GN=CFP56_43523 PE=3 SV=1)

HSP 1 Score: 769.2 bits (1985), Expect = 7.0e-219
Identity = 422/691 (61.07%), Postives = 486/691 (70.33%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           LIYSKYDEVG++LFGT++TKNELT+EVGGYQHVVVL++ KVVDGDLV+ L++LPRGT  G
Sbjct: 37  LIYSKYDEVGVILFGTEDTKNELTKEVGGYQHVVVLRDTKVVDGDLVEALQQLPRGTHDG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMD+LIKKFGET+K KKR+CLIT+AL PIKE +EGTKEDQV  IA+
Sbjct: 97  D------FLDAIIVGMDILIKKFGETDKKKKRICLITNALCPIKESFEGTKEDQVITIAE 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           QM KHGM M+S+VVR R   DA++++M+ENDVLLNIFS+KT AK+VYVESP SL GA+RT
Sbjct: 157 QMAKHGMGMESIVVRGRLAGDANKRIMEENDVLLNIFSQKTCAKLVYVESPISLFGALRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           R+ISPVTI+RGDLE+SS +KIKVWVYKKTSEEKFPTLK+YSDKAP TDKFATHEVKVDYE
Sbjct: 217 RNISPVTIFRGDLELSSKMKIKVWVYKKTSEEKFPTLKKYSDKAPPTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           Y+S EDTSKVVPPE RIKGYRYGPQV+PI+ +EWDAVKFKPEKSVKLLGFT+A NI+RHY
Sbjct: 277 YRSVEDTSKVVPPEGRIKGYRYGPQVVPIAPSEWDAVKFKPEKSVKLLGFTDAKNILRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKDVNVFIA+PGNKRAI+AVSALARAMKE +KVAIVRCVWR GQGSVVVGVLTPN+S+K
Sbjct: 337 YMKDVNVFIADPGNKRAILAVSALARAMKEKNKVAIVRCVWRNGQGSVVVGVLTPNVSDK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
           +   DS YFNVLPFAEDVREFQFPSFNNFP   QP+E+QQEAAD  VKMLDLAPSG+EE 
Sbjct: 397 DNTPDSFYFNVLPFAEDVREFQFPSFNNFPLSWQPNEQQQEAADNLVKMLDLAPSGKEEA 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQP+FTPNPVLE +     + S H D                +  L E L         +
Sbjct: 457 LQPNFTPNPVLERFYRYLELKSKHPDA--------------AVPPLDETLK--------K 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSMLLSICLFSFSRP------------- 541
           +TEPDP++LSQNKS I TF R FELKENPK++ S       F   +P             
Sbjct: 517 MTEPDPEVLSQNKSVIDTFRRNFELKENPKLKKSTR----RFLLEKPSGSKEGEGCGNIA 576

Query: 542 -QTLRGIKTTS------------------------------------------------- 601
            Q++  IK TS                                                 
Sbjct: 577 AQSVDSIKDTSVIKVENIGNLTPVQDFENMMSRRDGPEWIGKAIKDMKKRIFDLVEDSFE 636

Query: 602 ------------------MFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISK 612
                             +  QEP  FNDFL HLCKFC + NL+ FCE LA + L+LISK
Sbjct: 637 GDNYPKALECLVALRKGCILEQEPKHFNDFLHHLCKFCQKNNLNCFCEFLASKELTLISK 685

[Close]

BLAST of Carg23908 vs. TrEMBL
Match: tr|A0A2I4GAJ4|A0A2I4GAJ4_9ROSI (ATP-dependent DNA helicase 2 subunit KU80 OS=Juglans regia OX=51240 GN=LOC109006155 PE=3 SV=1)

HSP 1 Score: 750.7 bits (1937), Expect = 2.6e-213
Identity = 408/687 (59.39%), Postives = 482/687 (70.16%), Query Frame = 0


Query: 2   LIYSKYDEVGIVLFGTKETKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKRLPRGTVSG 61
           L+Y K D+VGI+LFGT++TKNELT EVGGY+HVVVLQ+ KVVDGDLV+ L++LP GT +G
Sbjct: 37  LVYHKSDQVGIILFGTEDTKNELTREVGGYEHVVVLQDTKVVDGDLVEALQQLPLGTFNG 96

Query: 62  DCIQDFAILDAIIVGMDMLIKKFGETEKGKKRLCLITDALFPIKEPYEGTKEDQVSAIAQ 121
           D       LDAIIVGMD+LIKKFGET+K KKRLCLIT+AL P+K+P+EGTKE QV  IA+
Sbjct: 97  D------FLDAIIVGMDILIKKFGETDKKKKRLCLITNALSPVKDPFEGTKEGQVITIAE 156

Query: 122 QMTKHGMRMDSVVVRRRFGRDADEKMMDENDVLLNIFSEKTNAKMVYVESPTSLLGAIRT 181
           Q+ +HGM M+S+VVR      A +++MDEND LLNIF++KT+AK+VYVESPTSLLGA+RT
Sbjct: 157 QLVRHGMGMESIVVREGLNGSATKRIMDENDHLLNIFAKKTSAKLVYVESPTSLLGALRT 216

Query: 182 RSISPVTIYRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPSTDKFATHEVKVDYE 241
           R+ISPVTI+RGDLE+SS +KIKVWVYKKTSEEKFPTLK+YSDKAP TDKFATHEVKVDYE
Sbjct: 217 RNISPVTIFRGDLELSSKMKIKVWVYKKTSEEKFPTLKKYSDKAPPTDKFATHEVKVDYE 276

Query: 242 YKSAEDTSKVVPPEHRIKGYRYGPQVIPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHY 301
           YKS ED S+VVPPE RIKGYRYGPQV+PI+ +EWDAVKFKPEKSVKLLGFTNASNI+RHY
Sbjct: 277 YKSVEDPSRVVPPEERIKGYRYGPQVVPIAPSEWDAVKFKPEKSVKLLGFTNASNILRHY 336

Query: 302 YMKDVNVFIAEPGNKRAIVAVSALARAMKELDKVAIVRCVWRQGQGSVVVGVLTPNISEK 361
           YMKD NVFIA+PGN RAI+AVSALARAMKE +KVAIVRCVWRQGQG+V+VGVLTPN+S+K
Sbjct: 337 YMKDANVFIADPGNTRAILAVSALARAMKEENKVAIVRCVWRQGQGNVIVGVLTPNVSDK 396

Query: 362 NGIADSLYFNVLPFAEDVREFQFPSFNNFPALMQPSEEQQEAADEFVKMLDLAPSGREEI 421
             I DS  FNVLPF EDVREFQFPSFNNFPA  QP+E+QQEAAD+ VK+LDLAPSG+EE 
Sbjct: 397 ENIPDSFNFNVLPFVEDVREFQFPSFNNFPASWQPNEQQQEAADDLVKLLDLAPSGKEEA 456

Query: 422 LQPDFTPNPVLEVYLYVFFVFSNHSDTQFTVHSSERHCSQLLITQLVELLHNCRAKCRGQ 481
           LQP+FTPNPVL+ + +   + S H D                I  L E L         +
Sbjct: 457 LQPEFTPNPVLQRFYHHLDLKSKHPDA--------------AIPPLDETLK--------R 516

Query: 482 ITEPDPDLLSQNKSGIGTFNRRFELKENPKVRTSMLLSICL----------FSFSRPQTL 541
           ITEP+P+L S NKS I  F R FELK+NPK++ S    +            ++    Q+L
Sbjct: 517 ITEPNPELFSLNKSAIDAFRRSFELKDNPKLKKSTRRILREKTSGSNMGKGYADISVQSL 576

Query: 542 RGIKTTS----------------------------------------------------- 601
             I+ TS                                                     
Sbjct: 577 NSIENTSAVKIEKIGDLNPVQDFETMMSRRDGPEWIGKAIKDMKNKIFDLVEDSYEGDNY 636

Query: 602 --------------MFIQEPTQFNDFLRHLCKFCLEKNLHSFCELLAFERLSLISKKEAA 612
                         +  QEP QFNDFL HLCKFC EKNL+SFCE L  + L+LISK EA 
Sbjct: 637 PKALECLVALRKGCILEQEPKQFNDFLHHLCKFCREKNLNSFCEFLTSKELALISKTEAI 685

The following BLAST results are available for this feature:

BLAST of Carg23908 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934682.1	5.7e-273	75.87	ATP-dependent DNA helicase 2 subunit KU80 [Cucurbita moschata]	[more]
XP_023540876.1	1.5e-270	75.58	ATP-dependent DNA helicase 2 subunit KU80 isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_023540878.1	1.5e-270	75.58	ATP-dependent DNA helicase 2 subunit KU80 isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_022974163.1	1.9e-268	74.42	ATP-dependent DNA helicase 2 subunit KU80 [Cucurbita maxima]	[more]
XP_022147110.1	8.8e-250	69.62	ATP-dependent DNA helicase 2 subunit KU80 [Momordica charantia]	[more]

BLAST of Carg23908 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48050.1	6.4e-170	47.71	Ku80 family protein	[more]

BLAST of Carg23908 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q75IP6\|KU80_ORYSJ	6.8e-169	48.12	ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9FQ09\|KU80_ARATH	1.2e-168	47.71	ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana OX=3702 GN=KU8...	[more]
sp\|Q54LY5\|XRCC5_DICDI	5.2e-52	29.36	X-ray repair cross-complementing protein 5 OS=Dictyostelium discoideum OX=44689 ...	[more]
sp\|P27641\|XRCC5_MOUSE	5.4e-25	26.22	X-ray repair cross-complementing protein 5 OS=Mus musculus OX=10090 GN=Xrcc5 PE=...	[more]
sp\|Q2H6C5\|KU80_CHAGB	1.6e-21	25.42	ATP-dependent DNA helicase II subunit 2 OS=Chaetomium globosum (strain ATCC 6205...	[more]

BLAST of Carg23908 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSG5\|A0A1S4DSG5_CUCME	7.1e-248	68.46	ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis melo OX=3656 GN=LOC10348335...	[more]
tr\|A0A1S3AWC4\|A0A1S3AWC4_CUCME	7.1e-248	68.46	ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis melo OX=3656 GN=LOC10348335...	[more]
tr\|A0A0A0L4D8\|A0A0A0L4D8_CUCSA	1.5e-242	68.02	ATP-dependent DNA helicase 2 subunit KU80 OS=Cucumis sativus OX=3659 GN=Csa_3G12...	[more]
tr\|A0A2P4LKH2\|A0A2P4LKH2_QUESU	7.0e-219	61.07	ATP-dependent DNA helicase 2 subunit KU80 OS=Quercus suber OX=58331 GN=CFP56_435...	[more]
tr\|A0A2I4GAJ4\|A0A2I4GAJ4_9ROSI	2.6e-213	59.39	ATP-dependent DNA helicase 2 subunit KU80 OS=Juglans regia OX=51240 GN=LOC109006...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016817	hydrolase activity, acting on acid anhydrides
GO:0003684	damaged DNA binding
GO:0042162	telomeric DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006310	DNA recombination
GO:0000723	telomere maintenance
GO:0006303	double-strand break repair via nonhomologous end joining

Vocabulary: **Cellular Component**
Term	Definition
GO:0043564	Ku70:Ku80 complex
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR005161	Ku_N
IPR036465	vWFA_dom_sf
IPR014893	Ku_PK_bind
IPR036494	Ku_C_sf
IPR024193	Ku80
IPR016194	SPOC-like_C_dom_sf
IPR006164	Ku70/Ku80_beta-barrel_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0016817	hydrolase activity, acting on acid anhydrides
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23908-RA	Carg23908-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006164	Ku70/Ku80 beta-barrel domain	SMART	SM00559	ku_4	coord: 249..390 e-value: 2.5E-36 score: 136.7
IPR006164	Ku70/Ku80 beta-barrel domain	PFAM	PF02735	Ku	coord: 198..402 e-value: 2.6E-44 score: 151.3
IPR016194	SPOC-like, C-terminal domain superfamily	GENE3D	G3DSA:2.40.290.10		coord: 187..390 e-value: 2.4E-58 score: 199.0
IPR016194	SPOC-like, C-terminal domain superfamily	SUPERFAMILY	SSF100939	SPOC domain-like	coord: 186..447
IPR024193	Ku80	PIRSF	PIRSF016570	Ku80	coord: 1..448 e-value: 7.8E-137 score: 455.3 coord: 528..608 e-value: 3.5E-8 score: 30.1 coord: 461..517 e-value: 0.77 score: 5.8
IPR024193	Ku80	PANTHER	PTHR12604:SF4	X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5	coord: 2..512
IPR024193	Ku80	PANTHER	PTHR12604:SF4	X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5	coord: 542..615
IPR036494	Ku, C-terminal domain superfamily	GENE3D	G3DSA:1.25.40.240		coord: 529..611 e-value: 2.4E-10 score: 42.1
IPR036494	Ku, C-terminal domain superfamily	SUPERFAMILY	SSF101420	C-terminal domain of Ku80	coord: 531..611
IPR014893	Ku, C-terminal	PFAM	PF08785	Ku_PK_bind	coord: 531..607 e-value: 6.9E-10 score: 39.0
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	G3DSA:3.40.50.410		coord: 1..172 e-value: 5.2E-32 score: 113.0
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	SSF53300	vWA-like	coord: 2..202
IPR005161	Ku70/Ku80, N-terminal alpha/beta	PFAM	PF03731	Ku_N	coord: 5..128 e-value: 3.9E-9 score: 36.5
None	No IPR available	PANTHER	PTHR12604	KU AUTOANTIGEN DNA HELICASE	coord: 542..615
None	No IPR available	PANTHER	PTHR12604	KU AUTOANTIGEN DNA HELICASE	coord: 2..512
None	No IPR available	CDD	cd00873	KU80	coord: 187..433 e-value: 7.24838E-88 score: 277.249

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23908	Csa3G126130	Cucumber (Chinese Long) v2	carcuB0518
Carg23908	MELO3C006188	Melon (DHL92) v3.5.1	carmeB0494
Carg23908	ClCG05G002220	Watermelon (Charleston Gray)	carwcgB0472
Carg23908	CSPI03G09550	Wild cucumber (PI 183967)	carcpiB0525
Carg23908	Cucsa.257660	Cucumber (Gy14) v1	carcgyB0559
Carg23908	CmaCh06G011340	Cucurbita maxima (Rimu)	carcmaB0679
Carg23908	CmoCh06G011600	Cucurbita moschata (Rifu)	carcmoB0661
Carg23908	Lsi05G019600	Bottle gourd (USVL1VR-Ls)	carlsiB442
Carg23908	CsGy3G009630	Cucumber (Gy14) v2	carcgybB0495
Carg23908	MELO3C006188.2	Melon (DHL92) v3.6.1	carmedB0500
Carg23908	CsaV3_3G009680	Cucumber (Chinese Long) v3	carcucB0524
Carg23908	Cla97C05G082740	Watermelon (97103) v2	carwmbB0511
Carg23908	Bhi01G000187	Wax gourd	carwgoB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23908	Cucurbita maxima (Rimu)	carcmaB0678
Carg23908	Cucurbita moschata (Rifu)	carcmoB0659
Carg23908	Cucurbita moschata (Rifu)	carcmoB0660
Carg23908	Cucurbita pepo (Zucchini)	carcpeB0684
Carg23908	Cucurbita pepo (Zucchini)	carcpeB0685
Carg23908	Cucurbita pepo (Zucchini)	carcpeB0686
Carg23908	Cucurbita pepo (Zucchini)	carcpeB0687
Carg23908	Wild cucumber (PI 183967)	carcpiB0526
Carg23908	Cucumber (Chinese Long) v2	carcuB0519
Carg23908	Cucumber (Chinese Long) v3	carcucB0525
Carg23908	Bottle gourd (USVL1VR-Ls)	carlsiB441
Carg23908	Melon (DHL92) v3.5.1	carmeB0493
Carg23908	Melon (DHL92) v3.6.1	carmedB0499
Carg23908	Watermelon (Charleston Gray)	carwcgB0471
Carg23908	Watermelon (97103) v1	carwmB0483
Carg23908	Watermelon (97103) v1	carwmB0484
Carg23908	Watermelon (97103) v2	carwmbB0510
Carg23908	Wax gourd	carwgoB0590
Carg23908	Silver-seed gourd	carcarB474
Carg23908	Silver-seed gourd	carcarB475
Carg23908	Silver-seed gourd	carcarB476
Carg23908	Cucumber (Gy14) v2	carcgybB0496
Carg23908	Cucumber (Gy14) v1	carcgyB0560