Carg23685 (gene) Silver-seed gourd

Overview
NameCarg23685
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsplicing factor U2af small subunit B-like
LocationCucurbita_argyrosperma_scaffold_142 : 87276 .. 89258 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCGAATCTTCTAGACCCCGAAGTTTTCCATGAACATTCTAGAGGAAGGGAGAAGCGGACCCCATTCTTCTCGCTAAATTCGGTTTTTTCCTCATCGAAACGCCACATTTCTTCCTCTCTCTCACTCATCCTCAACCCCCAGCCCTAACTTCTTGCGAGTTTGATTTTCCAAATTTGGGGGGATCTGCGATTTCTCTTTCGGTGTCTGAGGGAGACGGGGAAGAATTCGAACGAACAATCATTGGTGTTACTGAGATCCGTGAGGCGTAATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTCAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGTAGAGCTTGTTTTTAATTCCCGTGTTTCATAGTGCATATTTTTATCTTTTCAATCTTCTAACGTATTTGTTAATACGCATTTTTATCATGAATTATGAATATTTTTTGAGGTTGGATTGTTATTATCTGATTGTTTTATCATAATCTTGCTGTTATCTTAGAGATGGTTTAGTTTGGTTGATTTTCAAACGATCGCGCTATTTTCGATAGAGTAACATATTGTTTGTTGATTTTCTGTGTGTCCTATTTACTTCTTTATGCTCTTGGCGTGGTTTGTATATTCTGTTATTTTGAATAATCACGTTGGGTTGGTCGTTTCTTGTTGCGCCTAGAAGAATTGAAGTTAATTGTTGATCTGTGCATATTCCAGGAGTTCTATGAGGACCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTAATACTTTTATCTTAGCCCATTGTTTGAAGGAAACTGATTTTCCAATCAGCCTTTCATTGTAGAATAGCTAATGAGTAGTTATCTGATTCATTTAATTAGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGTTAGTTGGAGTTTCCTGCCCCTGCCCCCATTTCCTTTTATTTCTCTCTTTTGTCATTCTTGGTTTTATGTTTTTTGATTGTGTTAATACTATTTGTATTCAGCTTTTGAGTTTAAAATTGAATGTGTAACATAATGGGAAACTATTTCTTTCCAGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGGGGTGGATATTGCAATTTCATGCATTTGAAGAGGATCAGTCGGTATATTTTCGCCACCACCTCCATTTTTTCCCTCTAAGATGCAAGCTATGTGTAATTCATTTGATAGCCATGATCTTTTCCTGTCTTGCAGAGAGCTGAGGCACGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAAGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGCCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAAAAAATTATAATAATTCTAATTCTGATGGCCACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGA

mRNA sequence

CTCCGAATCTTCTAGACCCCGAAGTTTTCCATGAACATTCTAGAGGAAGGGAGAAGCGGACCCCATTCTTCTCGCTAAATTCGGTTTTTTCCTCATCGAAACGCCACATTTCTTCCTCTCTCTCACTCATCCTCAACCCCCAGCCCTAACTTCTTGCGAGTTTGATTTTCCAAATTTGGGGGGATCTGCGATTTCTCTTTCGGTGTCTGAGGGAGACGGGGAAGAATTCGAACGAACAATCATTGGTGTTACTGAGATCCGTGAGGCGTAATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTCAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGAGTTCTATGAGGACCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGGGGTGGATATTGCAATTTCATGCATTTGAAGAGGATCAGTCGAGAGCTGAGGCACGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAAGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGCCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAAAAAATTATAATAATTCTAATTCTGATGGCCACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGA

Coding sequence (CDS)

ATGGCGGAGCATTTGGCTTCCATATTCGGGACGGAGAAGGATAGGGTCAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGACATGGTGATAGGTGTTCACGGTTGCATACGAAGCCTAGTATAAGCCCCACGCTTTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACCCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCAAGATCCAGGACCATTTTGAGGAGTTCTATGAGGACCTATTTCAGGAACTGAACAAGTACGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCATATGGTGGGCAATGTTTATGTTCAATTTCAAGAGGAGGAACAAGCTGCAAATGCTCTTCGGAATCTTAGTGGAAGATTCTATGCTGGACGTCCGATCATTGTTGATTTCTCTCCAGTTACAGACTTTAGAGAAGCTACATGTAGGCAATATGAAGAAAACATGTGTAATCGGGGTGGATATTGCAATTTCATGCATTTGAAGAGGATCAGTCGAGAGCTGAGGCACGAACTGTTTGCAAGTTATCATCGAAGGCGTAGTCACAGTAGGAGCAGAAGCCGCAGCCCCTATAGGCATCGGAGTTATGAAGAACGCCATTATGGTCGGCATGGTCATAGTCGGAGGTATGATGAGAGAGATGCTTATCATGATAGTCGAAATAGGAGGCATAGGAGTACAAGCCCTGGTCATAGAGGAAGCAGAAGCCGTAGCCCACGAGGAAGGAAGAATCGAAGTCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGAGAAAAAGAACAACAAAAAAATTATAATAATTCTAATTCTGATGGCCACGAAAATAGCCATGAAAAAAGTTACAATGGTGATGTACAGTATGAAAATCAGACCTGTGGCTATAAGCAGCAGCAGCAGCAGCAGCAGAAGCCTCCTGAGCAAGGCTATGGTTACTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISRELRHELFASYHRRRSHSRSRSRSPYRHRSYEERHYGRHGHSRRYDERDAYHDSRNRRHRSTSPGHRGSRSRSPRGRKNRSPVREGSEERRAKIEQWNREKEQQKNYNNSNSDGHENSHEKSYNGDVQYENQTCGYKQQQQQQQKPPEQGYGY
Homology
[Close]
BLAST of Carg23685 vs. NCBI nr
Match: XP_022964867.1 (splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964868.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964870.1 splicing factor U2af small subunit B-like [Cucurbita moschata])

HSP 1 Score: 426.4 bits (1095), Expect = 8.8e-116
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYGXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYGXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYGXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 300

Query: 301 NGDVQYENQTCGYKXXXXXXXXXXXQGYGY 331
           NGDVQYENQTCGYKXXXXXXXXXXXQGYGY
Sbjct: 301 NGDVQYENQTCGYKXXXXXXXXXXXQGYGY 330

[Close]
BLAST of Carg23685 vs. NCBI nr
Match: XP_022970323.1 (splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970326.1 splicing factor U2af small subunit B-like [Cucurbita maxima])

HSP 1 Score: 418.3 bits (1074), Expect = 2.4e-113
Identity = 293/330 (88.79%), Postives = 293/330 (88.79%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYGXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RHELFASYHRRR                EERHYG XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RHELFASYHRRRGHSRSRSRSPYRHRSYEERHYG-XXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 300
           XXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXXX  Y
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXVREESEERRAKIEQWNRXXXXXXXXXXXXXXXXXXXXKSY 300

Query: 301 NGDVQYENQTCGYKXXXXXXXXXXXQGYGY 331
           NGDVQYENQTCGYKXXXXXXXXXXX GYGY
Sbjct: 301 NGDVQYENQTCGYKXXXXXXXXXXXXGYGY 329

[Close]
BLAST of Carg23685 vs. NCBI nr
Match: XP_023519661.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519662.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023519664.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 6.5e-111
Identity = 321/330 (97.27%), Postives = 321/330 (97.27%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYGXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RHELFASYHRRRSXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   Y
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSY 300

Query: 301 NGDVQYENQTCGYKXXXXXXXXXXXQGYGY 331
           NGDVQYENQTCGYKXXXXXXXXXXXQGYGY
Sbjct: 301 NGDVQYENQTCGYKXXXXXXXXXXXQGYGY 330

[Close]
BLAST of Carg23685 vs. NCBI nr
Match: XP_008461981.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_008461988.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 6.8e-108
Identity = 205/214 (95.79%), Postives = 206/214 (96.26%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYG 215
           RHELFA Y R   XXXXXXXXXXXXXX EER YG
Sbjct: 181 RHELFAMYRRXXXXXXXXXXXXXXXXXYEERSYG 214

[Close]
BLAST of Carg23685 vs. NCBI nr
Match: XP_004139466.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >XP_011654262.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >XP_011654266.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >KGN64894.1 hypothetical protein Csa_1G145960 [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 2.6e-107
Identity = 203/214 (94.86%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYG 215
           RHELFA Y R   XXXXXXXXXXXXX  EER YG
Sbjct: 181 RHELFAMYRRXXXXXXXXXXXXXXXXSYEERSYG 214

[Close]
BLAST of Carg23685 vs. TAIR10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 332.0 bits (850), Expect = 4.1e-91
Identity = 152/190 (80.00%), Postives = 165/190 (86.84%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVD QG P+DP KIQDHF          LNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFXXXXXXXXXXLNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFASYHR 191
           R +LF  Y R
Sbjct: 181 RRKLFGRYRR 190

[Close]
BLAST of Carg23685 vs. TAIR10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative)

HSP 1 Score: 331.6 bits (849), Expect = 5.4e-91
Identity = 151/188 (80.32%), Postives = 165/188 (87.77%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG P+DPRKIQ+HF            K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFXXXXXXXXXXXGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFASY 189
           R +LF  Y
Sbjct: 181 RRKLFGRY 188

[Close]
BLAST of Carg23685 vs. TAIR10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 142.5 bits (358), Expect = 4.6e-34
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 0 

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEEQAANALRN 128
               + +  +EEFYED+  E  KYGE+ +  VC N + H+ GNVYV ++  E A  A ++
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---MCNRGGYCNFMHLKR 176
           ++GR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  R
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFR 404

[Close]
BLAST of Carg23685 vs. TAIR10
Match: AT3G44785.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 109.0 bits (271), Expect = 5.7e-24
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 0 

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+TKPSISPTLLLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDAQGNPIDPRK 74
              Q    DP+K
Sbjct: 61 LDPVQSREKDPKK 73

[Close]
BLAST of Carg23685 vs. Swiss-Prot
Match: sp|Q9ZQW8|U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 3.2e-93
Identity = 154/185 (83.24%), Postives = 172/185 (92.97%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           G+DAQGNPIDP KIQ  FE+FYED+F+EL+KYGEIESL+VCDN ADHM+GNVYVQF+EE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K I R+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RHELF 186
           R  LF
Sbjct: 181 RKRLF 185

[Close]
BLAST of Carg23685 vs. Swiss-Prot
Match: sp|Q9FMY5|U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 7.4e-90
Identity = 152/190 (80.00%), Postives = 165/190 (86.84%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVD QG P+DP KIQDHF          LNK+GE+ESLNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFXXXXXXXXXXLNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RHELFASYHR 191
           R +LF  Y R
Sbjct: 181 RRKLFGRYRR 190

[Close]
BLAST of Carg23685 vs. Swiss-Prot
Match: sp|Q9S709|U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 9.7e-90
Identity = 151/188 (80.32%), Postives = 165/188 (87.77%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG P+DPRKIQ+HF            K+GEIESLN+CDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFXXXXXXXXXXXGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RHELFASY 189
           R +LF  Y
Sbjct: 181 RRKLFGRY 188

[Close]
BLAST of Carg23685 vs. Swiss-Prot
Match: sp|Q6AUG0|U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 9.4e-85
Identity = 141/191 (73.82%), Postives = 163/191 (85.34%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQG PIDP K+Q+H            +K+GE+E+LNVCDNLADHM+GNVYVQF+EEE
Sbjct: 61  GVDAQGQPIDPEKMQEHXXXXXXXXXXXXSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QA  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I REL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RHELFASYHRR 192
           R +L+    RR
Sbjct: 181 RRKLYGGRSRR 191

[Close]
BLAST of Carg23685 vs. Swiss-Prot
Match: sp|A1A4K8|U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.8e-65
Identity = 112/186 (60.22%), Postives = 143/186 (76.88%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQEL-NKYGEIESLNVCDNLADHMVGNVYVQFQEE 120
             D     +   ++Q+H++EF+E++F E+  KYGE+E +NVCDNL DH+VGNVYV+F+ E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 EQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISRE 180
           E A  A+ +L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRHELF 186
           LR EL+
Sbjct: 181 LRRELY 186

[Close]
BLAST of Carg23685 vs. TrEMBL
Match: tr|A0A1S3CFU2|A0A1S3CFU2_CUCME (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103500459 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 4.5e-108
Identity = 205/214 (95.79%), Postives = 206/214 (96.26%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYG 215
           RHELFA Y R   XXXXXXXXXXXXXX EER YG
Sbjct: 181 RHELFAMYRRXXXXXXXXXXXXXXXXXYEERSYG 214

[Close]
BLAST of Carg23685 vs. TrEMBL
Match: tr|A0A0A0LVA4|A0A0A0LVA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.7e-107
Identity = 203/214 (94.86%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDAQGNPIDPR IQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
           QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRI REL
Sbjct: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRIGREL 180

Query: 181 RHELFASYHRRRSXXXXXXXXXXXXXXXEERHYG 215
           RHELFA Y R   XXXXXXXXXXXXX  EER YG
Sbjct: 181 RHELFAMYRRXXXXXXXXXXXXXXXXSYEERSYG 214

[Close]
BLAST of Carg23685 vs. TrEMBL
Match: tr|A0A1S3TWR5|A0A1S3TWR5_VIGRR (splicing factor U2af small subunit B-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106759512 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 177/193 (91.71%), Postives = 187/193 (96.89%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDA G+PIDPRKIQDHFEEFYEDLF+EL+KYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AANA+RNL+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKRISR+L
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 180

Query: 181 RHELFASYHRRRS 194
           RH+LF  +HRR S
Sbjct: 181 RHQLFGKHHRRHS 193

[Close]
BLAST of Carg23685 vs. TrEMBL
Match: tr|A0A0L9UMZ4|A0A0L9UMZ4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g172300 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 177/193 (91.71%), Postives = 187/193 (96.89%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDA G+PIDPRKIQDHFEEFYEDLF+EL+KYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AANA+RNL+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKRISR+L
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 180

Query: 181 RHELFASYHRRRS 194
           RH+LF  +HRR S
Sbjct: 181 RHQLFGKHHRRHS 193

[Close]
BLAST of Carg23685 vs. TrEMBL
Match: tr|A0A0S3SGV7|A0A0S3SGV7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G069800 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 177/193 (91.71%), Postives = 187/193 (96.89%), Query Frame = 0 

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGNPIDPRKIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVGNVYVQFQEEE 120
           GVDA G+PIDPRKIQDHFEEFYEDLF+EL+KYGEIESLNVCDNLADHMVGNVYVQF+EEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFEELSKYGEIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNFMHLKRISREL 180
            AANA+RNL+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKRISR+L
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 180

Query: 181 RHELFASYHRRRS 194
           RH+LF  +HRR S
Sbjct: 181 RHQLFGKHHRRHS 193

The following BLAST results are available for this feature:
BLAST of Carg23685 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964867.18.8e-116100.00splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022964868.1 s... [more]
XP_022970323.12.4e-11388.79splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022970325.1 spl... [more]
XP_023519661.16.5e-11197.27splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02351... [more]
XP_008461981.16.8e-10895.79PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_00846198... [more]
XP_004139466.12.6e-10794.86PREDICTED: splicing factor U2af small subunit B-like [Cucumis sativus] >XP_01165... [more]
BLAST of Carg23685 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42820.24.1e-9180.00Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G27650.15.4e-9180.32U2 snRNP auxiliary factor small subunit, putative[more]
AT1G10320.14.6e-3441.76Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT3G44785.15.7e-2469.86Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of Carg23685 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZQW8|U2AFA_ORYSJ3.2e-9383.24Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|Q9FMY5|U2AFB_ARATH7.4e-9080.00Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ... [more]
sp|Q9S709|U2AFA_ARATH9.7e-9080.32Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ... [more]
sp|Q6AUG0|U2AFB_ORYSJ9.4e-8573.82Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
sp|A1A4K8|U2AF1_BOVIN4.8e-6560.22Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1[more]
BLAST of Carg23685 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CFU2|A0A1S3CFU2_CUCME4.5e-10895.79splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10350045... [more]
tr|A0A0A0LVA4|A0A0A0LVA4_CUCSA1.7e-10794.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G145960 PE=4 SV=1[more]
tr|A0A1S3TWR5|A0A1S3TWR5_VIGRR1.1e-10391.71splicing factor U2af small subunit B-like OS=Vigna radiata var. radiata OX=3916 ... [more]
tr|A0A0L9UMZ4|A0A0L9UMZ4_PHAAN1.1e-10391.71Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g172300 PE... [more]
tr|A0A0S3SGV7|A0A0S3SGV7_PHAAN1.1e-10391.71Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR003954RRM_dom_euk
IPR000571Znf_CCCH
IPR000504RRM_dom
IPR009145U2AF_small
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0089701 U2AF
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23685-RACarg23685-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 165..177
score: 66.78
coord: 37..57
score: 57.14
coord: 18..37
score: 85.68
coord: 103..125
score: 64.43
coord: 130..154
score: 62.0
coord: 75..90
score: 50.57
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..316
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 45..142
e-value: 7.5E-4
score: 28.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..139
e-value: 3.4E-7
score: 29.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 44..146
score: 11.861
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 148..174
e-value: 0.21
score: 20.6
coord: 13..39
e-value: 0.0065
score: 25.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 14..37
e-value: 5.0E-7
score: 29.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 148..175
score: 10.775
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 13.112
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 73..142
e-value: 3.3E-6
score: 36.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 43..145
e-value: 5.3E-32
score: 112.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 301..330
NoneNo IPR availablePANTHERPTHR12620:SF17SUBFAMILY NOT NAMEDcoord: 1..316
NoneNo IPR availableCDDcd12539RRM_U2AF35Bcoord: 44..145
e-value: 4.57125E-63
score: 196.816
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 32..154