Carg23620 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATCCTTATCTATTTTTTGTTCATCTTCTTCCTCACAATTGCTCTCGATTTCTGCAACAAGCGATGGAATCATCCCTTCTCCGTTCTGCTTCATCTCCTTTACTTCTCGAATCCACGGATCTTCTTCGCCGGATCGGATCCGTTTCCTCTCCGAGATTTCCTTCTACCGTTGTTCGTTGTTCTTCCAGAAGCCATGCTTCTATTCCGAAGCTCGAGCCGTTTAGTCGCACGAAGCTTGATCGCGCCATCAAAGATCCGCCTCTGGTTGAGAAGTCCGAGAACGAGCTTGCAGGTTTGGCTATTGATTTCAGAGGAAGTTGTTTTGACATGGAATCATTTTTGTGTTTCTGATCCTTTGCGATTTCTTGTTTTCTGTTTGGTCTGGTTTAGATTACTGCTCGACATTGGATGGAGACGATTCATATAGCTGTTGGAAAGCGTATTTCGAGCTCAAAGATCTTGAAGTGAGTTTCTAGGGATTCTCGATTGATTTTCGTTCCAGATTTTTCTGTTATTTCGCGTTTGGTTTCCCGTTTCCCCCAAATCCGATGAATTCTAGACCTAATTTTAAACGAGAGAGGAAACATGCGAATTAATTAATCAACGAACTAATTAATCGCTGTGTGTGTGTTTTCAGAAAGAGTCGCCTAAACAAGAAGTGGAGAAACTGATTCTTCAAGCAGGAGGCGTGAAATCGCTGATCGGACTCTTACACGGCATCGCGGGCATACACAAGAGGAAGGAAAGCGAAAACGAGGCGAAGAAGCCATTGAACCGCGTGGAAAGAAGAGTGAGAGATTGTCCAATACCAGATGGATTGCCGAAATCCGCAGAGGAAATTGAAGAAGAAGAAGGAGCGAGAATGCCGGATTCACCATTTACGAGATTGCTGAGGAGCAAAGGTACATTCCCTGCCTGGTACACCCCTGCACCCGATCACGAAACAGATTGAACAAAAATACATGATCTGTTCTATGAAAATCAGTAGTGGTTTTGGCAGATCGAATAGCATAGTAAAAATTTGTTATATAAAATTAGTGATTAGGAGACATCCTTCAGTATATGTGATTTGATGTGTGTTTTGTTCGATTGTATATTTTACCTAGAAATGTCTTAAGAATATGATTGAACAGAATGTTTGAATCTCATTCCTGAACATTTTTCTTCCATACATACCTAAATTTTGCTGATACATATAGGATAAATTAATAAAATTACTTCTACATTTTGTAATTTT CATCCTTATCTATTTTTTGTTCATCTTCTTCCTCACAATTGCTCTCGATTTCTGCAACAAGCGATGGAATCATCCCTTCTCCGTTCTGCTTCATCTCCTTTACTTCTCGAATCCACGGATCTTCTTCGCCGGATCGGATCCGTTTCCTCTCCGAGATTTCCTTCTACCGTTGTTCGTTGTTCTTCCAGAAGCCATGCTTCTATTCCGAAGCTCGAGCCGTTTAGTCGCACGAAGCTTGATCGCGCCATCAAAGATCCGCCTCTGGTTGAGAAGTCCGAGAACGAGCTTGCAGATTACTGCTCGACATTGGATGGAGACGATTCATATAGCTGTTGGAAAGCGTATTTCGAGCTCAAAGATCTTGAAAAAGAGTCGCCTAAACAAGAAGTGGAGAAACTGATTCTTCAAGCAGGAGGCGTGAAATCGCTGATCGGACTCTTACACGGCATCGCGGGCATACACAAGAGGAAGGAAAGCGAAAACGAGGCGAAGAAGCCATTGAACCGCGTGGAAAGAAGAGTGAGAGATTGTCCAATACCAGATGGATTGCCGAAATCCGCAGAGGAAATTGAAGAAGAAGAAGGAGCGAGAATGCCGGATTCACCATTTACGAGATTGCTGAGGAGCAAAGGTACATTCCCTGCCTGGTACACCCCTGCACCCGATCACGAAACAGATTGAACAAAAATACATGATCTGTTCTATGAAAATCAGTAGTGGTTTTGGCAGATCGAATAGCATAGTAAAAATTTGTTATATAAAATTAGTGATTAGGAGACATCCTTCAGTATATGTGATTTGATGTGTGTTTTGTTCGATTGTATATTTTACCTAGAAATGTCTTAAGAATATGATTGAACAGAATGTTTGAATCTCATTCCTGAACATTTTTCTTCCATACATACCTAAATTTTGCTGATACATATAGGATAAATTAATAAAATTACTTCTACATTTTGTAATTTT ATGGAATCATCCCTTCTCCGTTCTGCTTCATCTCCTTTACTTCTCGAATCCACGGATCTTCTTCGCCGGATCGGATCCGTTTCCTCTCCGAGATTTCCTTCTACCGTTGTTCGTTGTTCTTCCAGAAGCCATGCTTCTATTCCGAAGCTCGAGCCGTTTAGTCGCACGAAGCTTGATCGCGCCATCAAAGATCCGCCTCTGGTTGAGAAGTCCGAGAACGAGCTTGCAGATTACTGCTCGACATTGGATGGAGACGATTCATATAGCTGTTGGAAAGCGTATTTCGAGCTCAAAGATCTTGAAAAAGAGTCGCCTAAACAAGAAGTGGAGAAACTGATTCTTCAAGCAGGAGGCGTGAAATCGCTGATCGGACTCTTACACGGCATCGCGGGCATACACAAGAGGAAGGAAAGCGAAAACGAGGCGAAGAAGCCATTGAACCGCGTGGAAAGAAGAGTGAGAGATTGTCCAATACCAGATGGATTGCCGAAATCCGCAGAGGAAATTGAAGAAGAAGAAGGAGCGAGAATGCCGGATTCACCATTTACGAGATTGCTGAGGAGCAAAGGTACATTCCCTGCCTGGTACACCCCTGCACCCGATCACGAAACAGATTGA MESSLLRSASSPLLLESTDLLRRIGSVSSPRFPSTVVRCSSRSHASIPKLEPFSRTKLDRAIKDPPLVEKSENELADYCSTLDGDDSYSCWKAYFELKDLEKESPKQEVEKLILQAGGVKSLIGLLHGIAGIHKRKESENEAKKPLNRVERRVRDCPIPDGLPKSAEEIEEEEGARMPDSPFTRLLRSKGTFPAWYTPAPDHETD
BLAST of Carg23620 vs. NCBI nr
Match: XP_022943281.1 (CCG-binding protein 1 [Cucurbita moschata]) HSP 1 Score: 406.8 bits (1044), Expect = 4.5e-110 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
BLAST of Carg23620 vs. NCBI nr
Match: XP_023512041.1 (CCG-binding protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 402.5 bits (1033), Expect = 8.5e-109 Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0
BLAST of Carg23620 vs. NCBI nr
Match: XP_022986608.1 (CCG-binding protein 1 [Cucurbita maxima]) HSP 1 Score: 396.7 bits (1018), Expect = 4.7e-107 Identity = 199/205 (97.07%), Postives = 201/205 (98.05%), Query Frame = 0
BLAST of Carg23620 vs. NCBI nr
Match: XP_022148538.1 (CCG-binding protein 1 [Momordica charantia]) HSP 1 Score: 329.3 bits (843), Expect = 9.1e-87 Identity = 170/205 (82.93%), Postives = 180/205 (87.80%), Query Frame = 0
BLAST of Carg23620 vs. NCBI nr
Match: XP_008459226.1 (PREDICTED: CCG-binding protein 1 [Cucumis melo]) HSP 1 Score: 313.2 bits (801), Expect = 6.8e-82 Identity = 169/209 (80.86%), Postives = 181/209 (86.60%), Query Frame = 0
BLAST of Carg23620 vs. TAIR10
Match: AT2G15890.1 (maternal effect embryo arrest 14) HSP 1 Score: 218.4 bits (555), Expect = 4.1e-57 Identity = 121/211 (57.35%), Postives = 149/211 (70.62%), Query Frame = 0
BLAST of Carg23620 vs. Swiss-Prot
Match: sp|Q9XIM0|MEE14_ARATH (CCG-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MEE14 PE=1 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 7.4e-56 Identity = 121/211 (57.35%), Postives = 149/211 (70.62%), Query Frame = 0
BLAST of Carg23620 vs. TrEMBL
Match: tr|A0A1S3C971|A0A1S3C971_CUCME (CCG-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103498415 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 4.5e-82 Identity = 169/209 (80.86%), Postives = 181/209 (86.60%), Query Frame = 0
BLAST of Carg23620 vs. TrEMBL
Match: tr|A0A0A0LIJ6|A0A0A0LIJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237150 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 3.2e-80 Identity = 164/209 (78.47%), Postives = 181/209 (86.60%), Query Frame = 0
BLAST of Carg23620 vs. TrEMBL
Match: tr|A0A2P5A9L3|A0A2P5A9L3_9ROSA (Maternal effect embryo arrest OS=Trema orientalis OX=63057 GN=TorRG33x02_355370 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 5.0e-73 Identity = 143/205 (69.76%), Postives = 166/205 (80.98%), Query Frame = 0
BLAST of Carg23620 vs. TrEMBL
Match: tr|A0A2N9EKT0|A0A2N9EKT0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7349 PE=4 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 8.5e-73 Identity = 144/206 (69.90%), Postives = 169/206 (82.04%), Query Frame = 0
BLAST of Carg23620 vs. TrEMBL
Match: tr|A0A2P5C7H4|A0A2P5C7H4_PARAD (Maternal effect embryo arrest OS=Parasponia andersonii OX=3476 GN=PanWU01x14_177170 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 4.6e-71 Identity = 144/205 (70.24%), Postives = 165/205 (80.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|