Carg23589 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23589
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_235 : 188797 .. 189171 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTTTTCTTTGGTTCTTCTTCGGTTCTTCTTCAATCGCATCAATCTTAGAATTCAGTCGAGAATATGGAGCTAGATAGAGTGTACTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCAATGTTGAAGTATAAGGTTATCCTTTTCTTTTTCTATCCATCTGGTAATATTCCGTTTGCAGTATCCAGAAAGTGCTGTTTTGATTCGTCGGTATTGGTTTGTGTTAATTTTCTTTGAATTGTATGATTTGTGGCTTACATCTGATGAACTGTTGGCGTTTTTCAGACAATGCATGGATATGAAGTCCGCCGTGTTTCAGCCGAGGGAGGAGGCGTTTTTAAGGGTTGCGGTAAGAGTGACGAACCAAGA

mRNA sequence

AGGTTTTTCTTTGGTTCTTCTTCGGTTCTTCTTCAATCGCATCAATCTTAGAATTCAGTCGAGAATATGGAGCTAGATAGAGTGTACTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCAATGTTGAAGTATAAGACAATGCATGGATATGAAGTCCGCCGTGTTTCAGCCGAGGGAGGAGGCGTTTTTAAGGGTTGCGGTAAGAGTGACGAACCAAGA

Coding sequence (CDS)

ATGGAGCTAGATAGAGTGTACTGGGATGATTCCATGATTGTCAAAGCCATGGATGAAGCAATGTTGAAGTATAAGACAATGCATGGATATGAAGTCCGCCGTGTTTCAGCCGAGGGAGGAGGCGTTTTTAAGGGTTGCGGTAAGAGTGACGAACCAAGA

Protein sequence

MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR

Homology

[Close]

BLAST of Carg23589 vs. NCBI nr
Match: XP_022923599.1 (uncharacterized protein LOC111431235 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 54
          MELDRV+WDDSMIV+AMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR
Sbjct: 1  MELDRVHWDDSMIVRAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 53

[Close]

BLAST of Carg23589 vs. NCBI nr
Match: XP_023551933.1 (uncharacterized protein LOC111809760 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 54
          MELDR+YWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVF GCGKSDEPR
Sbjct: 1  MELDRMYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFNGCGKSDEPR 53

[Close]

BLAST of Carg23589 vs. NCBI nr
Match: XP_023551935.1 (uncharacterized protein LOC111809760 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 54
          MELDR+YWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVF GCGKSDEPR
Sbjct: 1  MELDRMYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFNGCGKSDEPR 53

[Close]

BLAST of Carg23589 vs. NCBI nr
Match: XP_022965361.1 (uncharacterized protein LOC111465241 isoform X1 [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-21
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 54
          MELDR+YWDDSMIVKAMDEAMLKYKTMHGY++RRVSAEGGGVF GCGKSDEPR
Sbjct: 1  MELDRMYWDDSMIVKAMDEAMLKYKTMHGYDIRRVSAEGGGVFNGCGKSDEPR 53

[Close]

BLAST of Carg23589 vs. NCBI nr
Match: XP_022965362.1 (uncharacterized protein LOC111465241 isoform X2 [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-21
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDEPR 54
          MELDR+YWDDSMIVKAMDEAMLKYKTMHGY++RRVSAEGGGVF GCGKSDEPR
Sbjct: 1  MELDRMYWDDSMIVKAMDEAMLKYKTMHGYDIRRVSAEGGGVFNGCGKSDEPR 53

[Close]

BLAST of Carg23589 vs. TrEMBL
Match: tr|A0A0A0L6D7|A0A0A0L6D7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008290 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDE 52
          M LD++YWDDSMIVKAMDEAM KYK MHG+EV RVS+EGGGV  GCGKSDE
Sbjct: 1  MGLDKMYWDDSMIVKAMDEAMWKYKIMHGHEVPRVSSEGGGVVNGCGKSDE 51

[Close]

BLAST of Carg23589 vs. TrEMBL
Match: tr|A0A1S4DXI5|A0A1S4DXI5_CUCME (uncharacterized protein LOC103490751 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDE 52
          M LD++YWD+SMIVKAMDEAMLKYK MHG+EV  VSAEGGGV   CGKSDE
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSDE 51

[Close]

BLAST of Carg23589 vs. TrEMBL
Match: tr|A0A1S3BL18|A0A1S3BL18_CUCME (uncharacterized protein LOC103490751 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDE 52
          M LD++YWD+SMIVKAMDEAMLKYK MHG+EV  VSAEGGGV   CGKSDE
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSDE 51

[Close]

BLAST of Carg23589 vs. TrEMBL
Match: tr|A0A1S4DXH8|A0A1S4DXH8_CUCME (uncharacterized protein LOC103490751 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490751 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MELDRVYWDDSMIVKAMDEAMLKYKTMHGYEVRRVSAEGGGVFKGCGKSDE 52
          M LD++YWD+SMIVKAMDEAMLKYK MHG+EV  VSAEGGGV   CGKSDE
Sbjct: 1  MGLDKMYWDNSMIVKAMDEAMLKYKIMHGHEVPCVSAEGGGVVNDCGKSDE 51

The following BLAST results are available for this feature:

BLAST of Carg23589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923599.1	1.7e-21	96.23	uncharacterized protein LOC111431235 [Cucurbita moschata]	[more]
XP_023551933.1	1.7e-21	96.23	uncharacterized protein LOC111809760 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023551935.1	1.7e-21	96.23	uncharacterized protein LOC111809760 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965361.1	5.0e-21	92.45	uncharacterized protein LOC111465241 isoform X1 [Cucurbita maxima]	[more]
XP_022965362.1	5.0e-21	92.45	uncharacterized protein LOC111465241 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg23589 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23589 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23589 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6D7\|A0A0A0L6D7_CUCSA	3.5e-15	80.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008290 PE=4 SV=1	[more]
tr\|A0A1S4DXI5\|A0A1S4DXI5_CUCME	6.7e-14	78.43	uncharacterized protein LOC103490751 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BL18\|A0A1S3BL18_CUCME	6.7e-14	78.43	uncharacterized protein LOC103490751 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DXH8\|A0A1S4DXH8_CUCME	6.7e-14	78.43	uncharacterized protein LOC103490751 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23589-RA	Carg23589-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23589	Lsi07G011650	Bottle gourd (USVL1VR-Ls)	carlsiB958
Carg23589	Bhi07G000821	Wax gourd	carwgoB1232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23589	Silver-seed gourd	carcarB613
Carg23589	Silver-seed gourd	carcarB651
Carg23589	Cucumber (Gy14) v2	carcgybB1033
Carg23589	Cucumber (Gy14) v1	carcgyB1164
Carg23589	Cucurbita maxima (Rimu)	carcmaB1453
Carg23589	Cucurbita maxima (Rimu)	carcmaB1454
Carg23589	Cucurbita moschata (Rifu)	carcmoB1407
Carg23589	Cucurbita moschata (Rifu)	carcmoB1408
Carg23589	Cucurbita moschata (Rifu)	carcmoB1409
Carg23589	Cucurbita pepo (Zucchini)	carcpeB1461
Carg23589	Cucurbita pepo (Zucchini)	carcpeB1462
Carg23589	Cucurbita pepo (Zucchini)	carcpeB1463
Carg23589	Wild cucumber (PI 183967)	carcpiB1085
Carg23589	Cucumber (Chinese Long) v2	carcuB1064
Carg23589	Cucumber (Chinese Long) v3	carcucB1097
Carg23589	Bottle gourd (USVL1VR-Ls)	carlsiB957
Carg23589	Melon (DHL92) v3.5.1	carmeB1017
Carg23589	Melon (DHL92) v3.6.1	carmedB1029
Carg23589	Watermelon (Charleston Gray)	carwcgB1021
Carg23589	Watermelon (97103) v1	carwmB1049
Carg23589	Watermelon (97103) v2	carwmbB1107
Carg23589	Wax gourd	carwgoB1231