Carg23513 (gene) Silver-seed gourd

NameCarg23513
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein of unknown function (DUF1677)
LocationCucurbita_argyrosperma_scaffold_278 : 127972 .. 128533 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGAGCTTGTTGTCACGTGCGACTGCTGTGGCCTGAAAGAGGATTGCACCCAATGCTATATCAGTGAAGTTAAGGCCAAATTTGAAGGGAAATGGCTATGTGGGCTCTGTTCTGAAGCTGTGAGAGACGAAGCTAAGCGAAGCAAGAAGCCATTGGTGGGCTTGGAAGAAGCTGTCAATGCCCACATGTCGTTTTGCCGTAAGTTCAAGTCTAACCCTGCCGTTCGTGTTGCTGATGGCATGAGGCTCATGCTTAGGAGGAGGTCCAGCGACATGTCGGCTTCTTCTTCTTCTTCTTCCTCCTCTAAGAAGTATGGGAGATCGGCTAGCTCCTCGCAGGTGGGTTTCGACATGTCGTCTTTGTCGCTCTGCTGATTATATTTTTGGAGACTTTTTAATTAATTAATTAACCAATTAGGGCTTCCCATGCTTTTCTCTCCCTTTTTCTTTATTATTCGAATAATATATAATTTGAAGGCTCTTTCTTTGTACAGAAATCTATGCCCATTTTCTAATTTGCTTTGAAAATATTTTTTCTTTTTATTAGCTAAAAAAA

mRNA sequence

ATGGAGATTGAGCTTGTTGTCACGTGCGACTGCTGTGGCCTGAAAGAGGATTGCACCCAATGCTATATCAGTGAAGTTAAGGCCAAATTTGAAGGGAAATGGCTATGTGGGCTCTGTTCTGAAGCTGTGAGAGACGAAGCTAAGCGAAGCAAGAAGCCATTGGTGGGCTTGGAAGAAGCTGTCAATGCCCACATGTCGTTTTGCCGTAAGTTCAAGTCTAACCCTGCCGTTCGTGTTGCTGATGGCATGAGGCTCATGCTTAGGAGGAGGTCCAGCGACATGTGGGTTTCGACATGTCGTCTTTGTCGCTCTGCTGATTATATTTTTGGAGACTTTTTAATTAATTAATTAACCAATTAGGGCTTCCCATGCTTTTCTCTCCCTTTTTCTTTATTATTCGAATAATATATAATTTGAAGGCTCTTTCTTTGTACAGAAATCTATGCCCATTTTCTAATTTGCTTTGAAAATATTTTTTCTTTTTATTAGCTAAAAAAA

Coding sequence (CDS)

ATGGAGATTGAGCTTGTTGTCACGTGCGACTGCTGTGGCCTGAAAGAGGATTGCACCCAATGCTATATCAGTGAAGTTAAGGCCAAATTTGAAGGGAAATGGCTATGTGGGCTCTGTTCTGAAGCTGTGAGAGACGAAGCTAAGCGAAGCAAGAAGCCATTGGTGGGCTTGGAAGAAGCTGTCAATGCCCACATGTCGTTTTGCCGTAAGTTCAAGTCTAACCCTGCCGTTCGTGTTGCTGATGGCATGAGGCTCATGCTTAGGAGGAGGTCCAGCGACATGTGGGTTTCGACATGTCGTCTTTGTCGCTCTGCTGATTATATTTTTGGAGACTTTTTAATTAATTAA

Protein sequence

MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEAVNAHMSFCRKFKSNPAVRVADGMRLMLRRRSSDMWVSTCRLCRSADYIFGDFLIN
BLAST of Carg23513 vs. NCBI nr
Match: XP_022955973.1 (uncharacterized protein LOC111457807 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA
Sbjct: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLM 87
          VNAHMSFCRKFKSNPAVRVADGMRLM
Sbjct: 61 VNAHMSFCRKFKSNPAVRVADGMRLM 86

BLAST of Carg23513 vs. NCBI nr
Match: XP_022980009.1 (uncharacterized protein LOC111479543 [Cucurbita maxima] >XP_023527200.1 uncharacterized protein LOC111790510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA
Sbjct: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLM 87
          VNAHMSFCRKFKSNPAVRVADGMRLM
Sbjct: 61 VNAHMSFCRKFKSNPAVRVADGMRLM 86

BLAST of Carg23513 vs. NCBI nr
Match: XP_022974390.1 (uncharacterized protein LOC111473071 [Cucurbita maxima] >XP_022975121.1 uncharacterized protein LOC111474099 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0

Query: 1   MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
           MEIE+VVTC+CCGLKEDCTQ YISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA
Sbjct: 37  MEIEVVVTCECCGLKEDCTQFYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 96

Query: 61  VNAHMSFCRKFKSNPAVRVADGMRLMLRRR 91
           V+AHMSFCRKFK+NPA+RVADG+RLMLRRR
Sbjct: 97  VDAHMSFCRKFKANPAIRVADGIRLMLRRR 126

BLAST of Carg23513 vs. NCBI nr
Match: XP_023540731.1 (uncharacterized protein LOC111801010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0

Query: 1   MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
           MEIE+VVTC+CCGLKEDCTQ YISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA
Sbjct: 37  MEIEVVVTCECCGLKEDCTQFYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 96

Query: 61  VNAHMSFCRKFKSNPAVRVADGMRLMLRRR 91
           V+AHMSFCRKFK+NPA+RVADG+RLMLRRR
Sbjct: 97  VDAHMSFCRKFKANPAIRVADGIRLMLRRR 126

BLAST of Carg23513 vs. NCBI nr
Match: XP_022934401.1 (uncharacterized protein LOC111441587 [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 82/90 (91.11%), Postives = 89/90 (98.89%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          ME+E+VVTC+CCGLKEDCTQ YISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA
Sbjct: 1  MEVEVVVTCECCGLKEDCTQFYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLMLRRR 91
          V+AHMSFCRKFK+NPA+RVADG+RLMLRRR
Sbjct: 61 VDAHMSFCRKFKANPAIRVADGIRLMLRRR 90

BLAST of Carg23513 vs. TAIR10
Match: AT4G14819.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-31
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIE  VTC+CCGL EDCTQ YIS+VKA F GKWLCGLCSEAV DE  RS K    +EEA
Sbjct: 1  MEIE-SVTCECCGLMEDCTQHYISKVKANFAGKWLCGLCSEAVSDEFSRSSKT---VEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLMLRRRSSDM 95
          VNAHMSFC KF +NPA  VADGMR MLRRRS ++
Sbjct: 61 VNAHMSFCGKFNANPAELVADGMRQMLRRRSGEL 90

BLAST of Carg23513 vs. TAIR10
Match: AT3G22540.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 126.7 bits (317), Expect = 9.1e-30
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIE  V C+CCGL EDCTQ YISEVK+ F+ KWLCGLCSEAVRDE  R K  +  ++EA
Sbjct: 1  MEIE-SVRCECCGLMEDCTQDYISEVKSNFDNKWLCGLCSEAVRDEVSRRK--MTTVDEA 60

Query: 61 VNAHMSFCRKF-KSNPAVRVADGMRLMLRRRSSDM 95
          V AH+SFC KF K NPAV VADGMR MLRRRS ++
Sbjct: 61 VKAHVSFCGKFKKDNPAVHVADGMRQMLRRRSGEL 92

BLAST of Carg23513 vs. TAIR10
Match: AT1G72510.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 7   VTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEAVNAHMS 66
           VTCDCCGL E+CTQ YI  V+ ++ GKW+CGLCSEAV+ E  R+K+ L+  EEA+  HM+
Sbjct: 37  VTCDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTKR-LLTTEEAMARHMN 96

Query: 67  FCRKFKS-----NPAVRVADGMRLMLRR 90
            C KFKS     NP   +   MR +LR+
Sbjct: 97  MCNKFKSSSPPPNPTGHLISAMRQILRK 123

BLAST of Carg23513 vs. TAIR10
Match: AT1G79770.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 90.9 bits (224), Expect = 5.6e-19
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 9   CDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEAVNAHMSFC 68
           C+CCG++E+CT  YI  V+ KF GKW+CGLCSEAV++E  R K+   GLE A+  HMS C
Sbjct: 57  CECCGMREECTMEYIERVREKFFGKWICGLCSEAVKEE--RDKREEEGLEGALKEHMSAC 116

Query: 69  RKF----KSNPAVRVADGMRLMLRR 90
            +F    +  PA+  AD MR MLRR
Sbjct: 117 LRFNKLGREYPALFQADAMRDMLRR 139

BLAST of Carg23513 vs. TAIR10
Match: AT5G20670.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-16
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 7  VTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEAVNAHMS 66
          VTCD CG  E+CT  YI+ VK + +G WLCGLC+EAV+DE  RS    + +EEA+  H +
Sbjct: 26 VTCDTCGFAEECTPAYINRVKERHKGHWLCGLCAEAVKDEVVRS-STRISVEEALRRHTT 85

Query: 67 FCRKFKS 74
          FC +F+S
Sbjct: 86 FCHRFRS 91

BLAST of Carg23513 vs. TrEMBL
Match: tr|A0A1S3AWX5|A0A1S3AWX5_CUCME (uncharacterized protein LOC103483701 OS=Cucumis melo OX=3656 GN=LOC103483701 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVG-LEE 60
          MEIELVVTCDCCGLKEDCTQ YISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVG LEE
Sbjct: 1  MEIELVVTCDCCGLKEDCTQFYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGNLEE 60

Query: 61 AVNAHMSFCRKFKSNPAVRVADGMRLM 87
          AVNAHMSFCRKFKSNPAVRVADGMRLM
Sbjct: 61 AVNAHMSFCRKFKSNPAVRVADGMRLM 87

BLAST of Carg23513 vs. TrEMBL
Match: tr|A0A0A0L4S3|A0A0A0L4S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146550 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVG-LEE 60
          MEIELVVTCDCCGLKEDCTQ YISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVG LEE
Sbjct: 1  MEIELVVTCDCCGLKEDCTQFYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGNLEE 60

Query: 61 AVNAHMSFCRKFKSNPAVRVADGMRLM 87
          AVNAHMSFCRKFKSNPAVRVADGMRLM
Sbjct: 61 AVNAHMSFCRKFKSNPAVRVADGMRLM 87

BLAST of Carg23513 vs. TrEMBL
Match: tr|D7T702|D7T702_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g03650 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.9e-35
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIEL V C+CCGLKEDCTQ YISEVKAKF+GKWLCGLCSEAVRDE  R KKP   LE+A
Sbjct: 1  MEIEL-VKCECCGLKEDCTQEYISEVKAKFDGKWLCGLCSEAVRDEVNRGKKPYC-LEDA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLMLRRRSSDM 95
          V AHMSFCRKFKSNPAVRVADGMR MLRRRS DM
Sbjct: 61 VIAHMSFCRKFKSNPAVRVADGMRQMLRRRSGDM 92

BLAST of Carg23513 vs. TrEMBL
Match: tr|A0A1U7ZVA7|A0A1U7ZVA7_NELNU (uncharacterized protein LOC104596560 OS=Nelumbo nucifera OX=4432 GN=LOC104596560 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.7e-35
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          MEIEL V C+CCGLKEDCTQ YISEVKA F GKWLCGLCSEAVRDE  R KKP  G+EEA
Sbjct: 1  MEIEL-VKCECCGLKEDCTQDYISEVKANFNGKWLCGLCSEAVRDEVNRGKKPF-GMEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLMLRRRSSDM 95
          + AHMSFCRKFKSNPAVRVADGMR +LRRRS D+
Sbjct: 61 MKAHMSFCRKFKSNPAVRVADGMRQLLRRRSGDL 92

BLAST of Carg23513 vs. TrEMBL
Match: tr|A0A2P5FWL1|A0A2P5FWL1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_019310 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 0

Query: 1  MEIELVVTCDCCGLKEDCTQCYISEVKAKFEGKWLCGLCSEAVRDEAKRSKKPLVGLEEA 60
          M+IEL V C+CCGLKEDCTQ YI++VKAKF+GKWLCGLCSEAVRDE  + K P  G+EEA
Sbjct: 1  MDIEL-VKCECCGLKEDCTQDYITDVKAKFDGKWLCGLCSEAVRDEVSKGKSPF-GMEEA 60

Query: 61 VNAHMSFCRKFKSNPAVRVADGMRLMLRRRSSDM 95
          V AHMSFCRKFKSNPAVRVADGMR MLRRRS D+
Sbjct: 61 VKAHMSFCRKFKSNPAVRVADGMRQMLRRRSGDL 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022955973.11.0e-42100.00uncharacterized protein LOC111457807 [Cucurbita moschata][more]
XP_022980009.11.0e-42100.00uncharacterized protein LOC111479543 [Cucurbita maxima] >XP_023527200.1 uncharac... [more]
XP_022974390.13.2e-4192.22uncharacterized protein LOC111473071 [Cucurbita maxima] >XP_022975121.1 uncharac... [more]
XP_023540731.13.2e-4192.22uncharacterized protein LOC111801010 [Cucurbita pepo subsp. pepo][more]
XP_022934401.14.2e-4191.11uncharacterized protein LOC111441587 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT4G14819.11.3e-3172.34Protein of unknown function (DUF1677)[more]
AT3G22540.19.1e-3068.42Protein of unknown function (DUF1677)[more]
AT1G72510.12.9e-2052.27Protein of unknown function (DUF1677)[more]
AT1G79770.15.6e-1952.94Protein of unknown function (DUF1677)[more]
AT5G20670.13.4e-1652.24Protein of unknown function (DUF1677)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AWX5|A0A1S3AWX5_CUCME3.1e-4097.70uncharacterized protein LOC103483701 OS=Cucumis melo OX=3656 GN=LOC103483701 PE=... [more]
tr|A0A0A0L4S3|A0A0A0L4S3_CUCSA3.1e-4097.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146550 PE=4 SV=1[more]
tr|D7T702|D7T702_VITVI3.9e-3584.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g03650 PE=4 SV=... [more]
tr|A0A1U7ZVA7|A0A1U7ZVA7_NELNU8.7e-3580.85uncharacterized protein LOC104596560 OS=Nelumbo nucifera OX=4432 GN=LOC104596560... [more]
tr|A0A2P5FWL1|A0A2P5FWL1_9ROSA2.5e-3478.72Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_019310 PE=4 S... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012876DUF1677_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23513-RACarg23513-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012876Protein of unknown function DUF1677, plantPFAMPF07911DUF1677coord: 7..89
e-value: 1.6E-33
score: 114.8
IPR012876Protein of unknown function DUF1677, plantPANTHERPTHR33108FAMILY NOT NAMEDcoord: 1..95
NoneNo IPR availablePANTHERPTHR33108:SF2SUBFAMILY NOT NAMEDcoord: 1..95

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg23513Carg15900Silver-seed gourdcarcarB348
Carg23513Carg17427Silver-seed gourdcarcarB545