Carg23484 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23484
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_196 : 398687 .. 401558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCGTAGTGAAAAACCCTTAATTTCTCGTCGGCTTCTTAGGAACTTCTTACAAAGGTGAACTGTATGTTAGCTTTATTTATCAGTCTTCTTTCATTCTCAATTTACAAATCCTCGTGCATCGTTCTTCAGCAAAAAGAAGCTACACTGTTCGAATCAAGTTGTGCTTCAATTTATTGTACTGCTATCTACAGAGTTTGATTTTGTTAGGTTGTGTTGTTTTCATATCAGCTGTTTGTTCTTATGTTTCTCTTATTGCTGCTGGAATTTAGGAAGTTTAGGTGGAAAATCTATTGGGTTTCTTTGAATGCCAAAAACCCTTTTGGAATTTGAAGTTATATTGTGAATTTTTATTTGAAACTTGGATGATATTGGGTAGAACTGAAATTTTTCATTGAGATATTGGTTGTTTAAGTTGTGAGATCCTACGTCGGTTGGGGAGGAGAATGAAACACTCTTTATAAGGGTGTGGGAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAGCCCATAAGGGAAAGCTCAAAGAAGACAATATCTGCTAGCGGTGGATTTCGGCCGTTATGAATGGTATCAGTGCTAGACACTAGGCGATGTGCTAGCAAAGAGGCTGAGCCGCAAGGGGTGGACATGAGGCGATGTGTCAGGAAGGACGTGAGCCTCGAAGGGGGTGGATTTGGTGGAGGTCCCACATCAGTTGGAGAAAGGAATGAGGGCCAGCGAGGATGCTGGGACCCAAAGGGAGTGGATTGTGAGATCCCACGTCAGTTGGAGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCAGCCCCAAAGGGGGGTGGATTATGAAATCTCACATCGGTTGGGGAAGAAAACGAAACACTTTTTATAAGGGTGTGGAAACCTCTCTAGCCCCGAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAGGGTGTGAAAACCTCTCCCTAGCATACGCGTTTCAAAAACCTTAAGGGGAAGTCTGAAAGGGAAAACCAAAGAAGACAATATCTGCTAGTGGTGTGTATTGTGAGATCTCACATCGGTTGAGGAGGAGAACGAAACACCCTTTACAAGGGCGTGGAAACCTCTCCTTAGCAGACGCGTTTCAAAAACCTTAAGGGGAAGCCTGAAAGTAAAAACCCAAAGAAAACAATATCTATTAGTGGTGTGTTTGGGTCATTACATGAGGATGTATTGTTAATAACTAATGTTTTCTCTTAGGAGCATATATGATTTGGTAAATTTGTTGTTAATTGAAATTTGATATCTCTCGTAGGAATGGCTTTTCTGGAGGTAAAACAGAAACTCTTACGCAAGGTCGAATCTTTAGGATTCTCGAGGGCCCGAGCAGCCCGAGCACTTCATGTTACTGGTGAGAATGATTGATGACATTCGTAGCTCGAACATAACAATCATATGCAATGATTTGTTATTTGACAAAATATTTGAGTTATGTTGATTACACTTCATGTCACAAGTTCTCAGATCAGTACTTTCTTTGTTCTTCAGGAAATGCCAGCTTTGAAGATGCGATCGATTGGATCGTTCATCACGAGAACGATCCGGATATTGATCAAGTGCCCCTGGTATAATTCTCTATTCATATAGACTTCTTCGGTTAGTTTTTAAGATAAATTGTAATTTAGATTACCTTGTTAATCAAATATCTCAAGGCAAAAACACTAGTTCGAGATTCGAATCACTCCACGAGCAAGATTGACCACATCAAGCTTGAATGATTCTACATAGAATTACAAAGAAACTTAGCCATTGGCTAAAACAAAGCACAAATGCCTCTTCTACTACATTTTCCAAGTCCCTCTCTACAAAGATAACATACATGACTTTATATAGCTTCAAAATGAAAACCTTTAACCGGCCTGAGGCATTCCAAGAGTTGTAACATTCGTACTTTTTTACCATAATTAGCCACTATGTAGATTACGTCTTAAAATACATTAAAGAAACACCATAACTCTAAATTACCATCCATAATACATTTGTAACCATCTAAGAATAAATGAAGCTCCACTTGAAGTACCTTGAAACATTTGTTGCATAAATGAAGCTTGATTCTTCTTAAGGTGACGTTAATATTGCATGATTAAGATGTCTGGTTCATATCAAATGTTATGCAGGTAGCAATAGAGATCGATATCGAATCTCCCGAACCATTTCATATCACAGAGGAAACGAAAAAGAAAGCTAATGAATTAAGGTATGATGCCAGAATTTGTTCATTGTGAACTGCCATCATAAACTTAGAACTGTTTAGTCTTCAGTTCCATCATATTAAATTCTTTGATAGTTCACTTAAATTCTTATTGATTTTTCTATGTTTAGGGATCAAATACTGAAAGAAAAGGAAAAGGAAGAAAAAGAGTTAGAAAAACGAAGGGAAAAGGTATCGCATTCGTTCGCGTTCGTTCGGGAAAGAACGAATTCTATCTTGATTTAGAATTTGATCTGTAAATTTGTATGCTCTCCAGTCTCCATGACAATATGTTTTGATTCTGTTTCCATGAAAATCAACTTTCATGATTTAGTGCTTTCGATATCTATAGGATCAAATTCGTTCGGGGAAAGAACTGCAAGAAGCGAAACGAATGGCAGAAGGAACTGAATGGAAACGGTGTGTTTTCTTGTTCAATCTTGTTTCTGACATCATTCTCTGACACATAAAATGTTGTAACTTTCTGTTTGGAGTGAAAGATTTGTTCTTATTTGCTCAGCTATAAAGATTCTAGACAAGCTGAGATAAAGGAGGAGAAAAAAGCAAAAGAAAAGGTTTTACAAGCACTAGAACAGAACAAG

mRNA sequence

ATGGCTTCTCGTAGTGAAAAACCCTTAATTTCTCGTCGGCTTCTTAGGAACTTCTTACAAAGGGATCAAATACTGAAAGAAAAGGAAAAGGAAGAAAAAGAGTTAGAAAAACGAAGGGAAAAGGATCAAATTCGTTCGGGGAAAGAACTGCAAGAAGCGAAACGAATGGCAGAAGGAACTGAATGGAAACGCTATAAAGATTCTAGACAAGCTGAGATAAAGGAGGAGAAAAAAGCAAAAGAAAAGGTTTTACAAGCACTAGAACAGAACAAG

Coding sequence (CDS)

ATGGCTTCTCGTAGTGAAAAACCCTTAATTTCTCGTCGGCTTCTTAGGAACTTCTTACAAAGGGATCAAATACTGAAAGAAAAGGAAAAGGAAGAAAAAGAGTTAGAAAAACGAAGGGAAAAGGATCAAATTCGTTCGGGGAAAGAACTGCAAGAAGCGAAACGAATGGCAGAAGGAACTGAATGGAAACGCTATAAAGATTCTAGACAAGCTGAGATAAAGGAGGAGAAAAAAGCAAAAGAAAAGGTTTTACAAGCACTAGAACAGAACAAG

Protein sequence

MASRSEKPLISRRLLRNFLQRDQILKEKEKEEKELEKRREKDQIRSGKELQEAKRMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQALEQNK

Homology

[Close]

BLAST of Carg23484 vs. NCBI nr
Match: XP_022938055.1 (UBX domain-containing protein 1-like isoform X2 [Cucurbita moschata] >XP_022938056.1 UBX domain-containing protein 1-like isoform X2 [Cucurbita moschata] >XP_022938058.1 UBX domain-containing protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 21  RDQILKEXXXXXXXXXXXXXXXXXXSGKELQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK 80
           RDQILK XXXXXXXXXXXXXXXXXX    LQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK
Sbjct: 84  RDQILKXXXXXXXXXXXXXXXXXXXXXXXLQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK 143

Query: 81  EKVLQALEQNK 92
           EKVLQALEQNK
Sbjct: 144 EKVLQALEQNK 154

[Close]

BLAST of Carg23484 vs. NCBI nr
Match: XP_022938054.1 (E3 ubiquitin-protein ligase BRE1A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 21  RDQILKEXXXXXXXXXXXXXXXXXXSGKELQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK 80
           RDQILK XXXXXXXXXXXXXXXXXX    LQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK
Sbjct: 116 RDQILKXXXXXXXXXXXXXXXXXXXXXXXLQEAKRMAEGTEWKRYKDSRQAEIKEEKKAK 175

Query: 81  EKVLQALEQNK 92
           EKVLQALEQNK
Sbjct: 176 EKVLQALEQNK 186

[Close]

BLAST of Carg23484 vs. NCBI nr
Match: XP_022965831.1 (UBX domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_022965833.1 UBX domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_022965834.1 UBX domain-containing protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 55  RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQALEQNK 92
           RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQ LEQNK
Sbjct: 118 RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQTLEQNK 154

[Close]

BLAST of Carg23484 vs. NCBI nr
Match: XP_022965830.1 (uncharacterized protein LOC111465598 isoform X1 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 55  RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQALEQNK 92
           RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQ LEQNK
Sbjct: 150 RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQTLEQNK 186

[Close]

BLAST of Carg23484 vs. NCBI nr
Match: XP_023536714.1 (UBX domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023536716.1 UBX domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 55  RMAEGTEWKRYKDSRQAEIKEEKKAKEKVLQALEQNK 92
           RMAEGTEWKRYKDSRQAEI+EEKKA+EKVLQ LEQNK
Sbjct: 118 RMAEGTEWKRYKDSRQAEIQEEKKAREKVLQTLEQNK 154

The following BLAST results are available for this feature:

BLAST of Carg23484 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938055.1	1.2e-11	92.96	UBX domain-containing protein 1-like isoform X2 [Cucurbita moschata] >XP_0229380...	[more]
XP_022938054.1	1.2e-11	92.96	E3 ubiquitin-protein ligase BRE1A-like isoform X1 [Cucurbita moschata]	[more]
XP_022965831.1	4.9e-08	97.30	UBX domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_022965833...	[more]
XP_022965830.1	4.9e-08	97.30	uncharacterized protein LOC111465598 isoform X1 [Cucurbita maxima]	[more]
XP_023536714.1	3.2e-07	91.89	UBX domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >XP_023536716....	[more]

BLAST of Carg23484 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23484 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23484 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23484-RA	Carg23484-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..45
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23484	CmaCh12G010010	Cucurbita maxima (Rimu)	carcmaB0670
Carg23484	CmoCh12G010110	Cucurbita moschata (Rifu)	carcmoB0652
Carg23484	Cp4.1LG07g08360	Cucurbita pepo (Zucchini)	carcpeB0676

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None