Carg23389 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23389
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein 34
Location	Cucurbita_argyrosperma_scaffold_184 : 102523 .. 105939 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATTTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAGGAGTAGGAAGAAGAACAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAACGATGATGAAGAAAGAGGTTTCCAATCCCGTGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGATAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATGTAAGCATTGTTTTCTATTTGTTCATTATCTTGAATTTCGAGTTCGTGGGGTTTTGTTTTTCTCAATTTATCGATCTTCAAACTTGAGAATTTTGTACTTTTTCTCTGATCAGAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGGTAATGCTTTTATATCATAATGTGACGTAATTGAATTTGATAAATGTCGCTTAATTGTATCGATATTGAATCGTTGTTCACTTGGAATCAAAATTAGAGAGAGGGGTCGTGGTTTTAGGATGATCTTACTTGATTAGGGTTATACTATATGGTCGTCACTTCAGTCCCCTTTACTCTTAGCGTGCACAGTTTGCTTGCATGCCGCTTTGACTCCTAGAGTTCTTTTAAGAGATCATGATTTTAGGAAAGGTCCTTAGGAGAGAATTACTGGATATGATTGCTTATTCTTATTAAGACATTATATACCGTTTTTAGTGATGAAAATGAATGATTTGCAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGACCCATAACATGGCTGTGGTATAGTTCTTACTCTCTTTTCTTCTTCTTCTTAGCTTTTCGAAGTCGAAACTTGTAGCTTTGGCTATTTCCATTCATGATCTTTATATATGTGAATTTAGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGTAACCTTTTTCTTCCCTCTTCCCTTCCTTTATGCTAAGTTATGTAAAGTTGGTTTATGGTTGTTTTATACATCTACATTTTCAGGATGAAGAATTGTATCAACTATTTTGCGGAATGGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGTACGATCGGCTTTTTTGATATTAATGTTCATTCATTTAGATAGATCTGTAAGCTCATTGGTTTTCTCTCATTTTCTTCACTTTTTACTAATATATGGTTTAAATTACATGTTTGCGCACACACGAGTATGCTGTATAGGTGTATCGATATCGTGTGTGCGCACTTTTCTGTCTGTCTCGATCTAGTAGACGAGGTTGTAAATTCCGTTCGTTTGGTTGAGGAACCTGGTATTTTTATTATGCTTTTTTATAACCGGGTTCCTGAGGCCTCATCTCTTGCATCATGCTCATGGTGGATTCCGACTGGCTATGGGGAGGCTTCATCCACTTTACACCCCCACTCTTTGCATCACGTTCATGAATCATGACTAACTAATACTAGTAAGGATGCGATCCTCCACCGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTTTCCCTAACAAACGCGTTTTAAAACCGTGAGGCTGACAGTGATGTGTAATGGGCCAAAGCAGATAATATTTGTTAGCAGCGGACTTGGGCTACTACACTTCAAGTTCAGCTCAACAATGACTTTGAGTTATTAAGTTCTAACCTTCAGATTTAGTTAAATTAAAACCTTGTTCGTATTTCTAATCATCTCGAACCCTGGCTACCGAAACACTCGGGTAGCAGTTAGTAAATACATAGGCAAAAGCTAGATATCTGTTAATTTATTTTTCTCTCTATCTTCCCTGATTGTTTTTGTCACCTCTAGTCTTGAAGACAACTGCATGTTTTCCAATTGGTTTACATCTTTTTCTTTCAATTTCAATCTAAGAACAATGCATTGCTTCTATGTCTGTGCAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCTCTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGATCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCATTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAGATAGGAAACACAGGAAGGAAGAGGTTGATGGTGTGGAATGAACTGAATACTCTTAGCTTTCTTTGTATTCTTTTATGTGGTTCACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATAT

mRNA sequence

ATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATTTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAGGAGTAGGAAGAAGAACAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAACGATGATGAAGAAAGAGGTTTCCAATCCCGTGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGATAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGACCCATAACATGGCTGTGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATGGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCTCTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGATCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCATTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAGATAGGAAACACAGGAAGGAAGAGGTTGATGGTGTGGAATGAACTGAATACTCTTAGCTTTCTTTGTATTCTTTTATGTGGTTCACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATAT

Coding sequence (CDS)

ATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGAGAACCCTTTTCGTAGGAAAGATACGAGTTCAACTCCTGTGGCGGCAGTTGCTGAAAAATTTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAGGAGTAGGAAGAAGAACAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAACGATGATGAAGAAAGAGGTTTCCAATCCCGTGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGATAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGACCCATAACATGGCTGTGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATGGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCTCTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGATCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCATTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGTTTAGATAG

Protein sequence

MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVAAVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRELDNEVIENDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR

Homology

[Close]

BLAST of Carg23389 vs. NCBI nr
Match: XP_022922379.1 (nucleolar protein 12 [Cucurbita moschata])

HSP 1 Score: 973.0 bits (2514), Expect = 4.6e-280
Identity = 581/597 (97.32%), Postives = 588/597 (98.49%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFST+NPFRRKDTS TPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
           AVAEK PSGGADDHTIDDV+SRKK+KEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
           LDNEVIE XXXXXXXXXXXXXXXX  NGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX
Sbjct: 121 LDNEVIEKXXXXXXXXXXXXXXXXXXNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
           XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEML+TKEGFDDESK
Sbjct: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           SSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCG+ENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTXXXXXXXX 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRV HKRRRPEDFPERT  XXXXXX
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSEXXXXXX 540

Query: 541 XXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 598
           XXXXXXXXXXXXXXNRKAVANASRNG+AAPKQGGVKRKSDSRTPESSHRNKRVKR R
Sbjct: 541 XXXXXXXXXXXXXXNRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 597

[Close]

BLAST of Carg23389 vs. NCBI nr
Match: XP_023540437.1 (nucleolar protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 966.5 bits (2497), Expect = 4.3e-278
Identity = 577/597 (96.65%), Postives = 587/597 (98.32%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTNGPKSSSEEVAIGSA SSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSASSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
           AVAEK PSGGAD HTIDDV+SR+K+KEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX
Sbjct: 61  AVAEKSPSGGADGHTIDDVKSREKSKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
           LDNEVIE XXXXXXXXXXXXXXXX  NGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX
Sbjct: 121 LDNEVIEKXXXXXXXXXXXXXXXXXXNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
           XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEML+TKEGFDDESK
Sbjct: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           SSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPPRKKLKVGSSPIY+PKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYEPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCG+ENVGS+VEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSNVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKR TPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRATPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTXXXXXXXX 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVD+KRRRPEDFPERT  XXXXXX
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDYKRRRPEDFPERTSEXXXXXX 540

Query: 541 XXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 598
           XXXXXXXXXXXXXXNRKAVANASRNG+AAPKQGG KRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 XXXXXXXXXXXXXXNRKAVANASRNGVAAPKQGGAKRKSDSRTPESSHRNKRVKRFR 597

[Close]

BLAST of Carg23389 vs. NCBI nr
Match: XP_023005336.1 (nucleolar protein 12 [Cucurbita maxima])

HSP 1 Score: 951.0 bits (2457), Expect = 1.9e-273
Identity = 574/598 (95.99%), Postives = 582/598 (97.32%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKKTN PKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTP+A
Sbjct: 1   MGKKKTNDPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPLA 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
           AVAEK PSGGADDHTIDDV+SRKK+KEKRVGMDLDSAENGVKSSS+VKK XXXXXXXXXX
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSQVKKSXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
             NEVIE XXXXXXXXXXXXXXXX  NGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX
Sbjct: 121 XXNEVIEKXXXXXXXXXXXXXXXXXXNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
           XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEML+TKEGFDDESK
Sbjct: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           SSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCG+ENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDR-SAKKRAVDSGLRTPDSSKRVTPKAT 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDR SAKKRAVDSGLRTPDSSKR   KAT
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSSAKKRAVDSGLRTPDSSKRA--KAT 480

Query: 481 VASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTXXXXXXX 540
           VASYQGLRASKP SQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPE T  XXXXX
Sbjct: 481 VASYQGLRASKPVSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPESTSEXXXXX 540

Query: 541 XXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 598
           XXXXXXXXXXXXXXXNRKAVANASRNG+AAPKQGGVKRKSDSRTPESSHRNKRVKRFR
Sbjct: 541 XXXXXXXXXXXXXXXNRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 596

[Close]

BLAST of Carg23389 vs. NCBI nr
Match: KGN55740.1 (hypothetical protein Csa_3G009460 [Cucumis sativus])

HSP 1 Score: 677.9 bits (1748), Expect = 3.0e-191
Identity = 402/601 (66.89%), Postives = 445/601 (74.04%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MG  K   PK+ SEE    ++  SVF+TLFG+ G E+  VSIFST+NPFRRK + S P  
Sbjct: 1   MGNNKITDPKNPSEETPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPP 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
                               SRKK K+KRVG+DLDS E GVK+SSE+K XXXXXXXXXXX
Sbjct: 61  PAE----------------ISRKKGKDKRVGIDLDSTE-GVKTSSEIKXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                +++                K+ G  +GSE S +         SKLG +VKL KE 
Sbjct: 121 XXXXXVDDDGERGFESQGGLKDSSKKKGTVLGSETSEK---SHGFEGSKLGENVKLMKER 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                     EYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKVNED 300
           LLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+NE 
Sbjct: 241 LLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEA 300

Query: 301 ADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFV 360
           ADSSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRTVFV
Sbjct: 301 ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFV 360

Query: 361 GNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINN 420
           GNLPFDVKDEELYQLFCG++N+GSSVEAVRVIRDP VN+GKGFAYVFFKT+EAANSV+NN
Sbjct: 361 GNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNN 420

Query: 421 QKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRVTPK 480
           Q L+LR R LRLFH K N TSTP KKRN P TE DR+ AKK+ VDSGL TPDSSKRVTPK
Sbjct: 421 QLLELRGRTLRLFHTKTNPTSTPFKKRNRPPTEADRTPAKKKYVDSGLGTPDSSKRVTPK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRR-PEDFPERTXXXX 540
           AT  SYQGLRASK GSQKK   KGS TKW KSHSNSKEK +DHK+RR PE   ER     
Sbjct: 481 ATNVSYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRRGPEKTSER----- 540

Query: 541 XXXXXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 598
                             NRKAVA A++NGIA PKQ G+KRKSDSR+P SSHRNKRVKRF
Sbjct: 541 ----------KGKRPAVANRKAVAMATKNGIATPKQTGLKRKSDSRSPGSSHRNKRVKRF 566

[Close]

BLAST of Carg23389 vs. NCBI nr
Match: NP_001267538.1 (uncharacterized LOC101206555 [Cucumis sativus] >ACA50448.1 putative RNA recognition motif-containing protein [Cucumis sativus])

HSP 1 Score: 675.2 bits (1741), Expect = 2.0e-190
Identity = 401/601 (66.72%), Postives = 444/601 (73.88%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MG  K   PK+ SEE    ++  SVF+TLFG+ G E+  VSIFST+NPFRRK + S P  
Sbjct: 1   MGNNKITDPKNPSEETPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPP 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
                               SRKK K+KRVG+DLDS E GVK+SSE+K XXXXXXXXXXX
Sbjct: 61  PAE----------------ISRKKGKDKRVGIDLDSTE-GVKTSSEIKXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                +++                K+ G  +GSE S +         SKLG +VKL KE 
Sbjct: 121 XXXXXVDDDGERGFESQGGLKDSSKKKGTVLGSETSEK---SHGFEGSKLGENVKLMKER 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                     EYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKVNED 300
           LLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+NE 
Sbjct: 241 LLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEA 300

Query: 301 ADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFV 360
           ADSSHAYVVFKTEESA ASL+HNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRTVFV
Sbjct: 301 ADSSHAYVVFKTEESAWASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFV 360

Query: 361 GNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINN 420
           GNLPFDVKDEELYQLFCG++N+GSSVEAVRVIRDP VN+GKGFAYVFFKT+EAANSV+NN
Sbjct: 361 GNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNN 420

Query: 421 QKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRVTPK 480
           Q L+LR R LRLFH K N TSTP KKRN P TE DR+ AKK+ VDSGL TPDSSKRVTPK
Sbjct: 421 QLLELRGRTLRLFHTKTNPTSTPFKKRNRPPTEADRTPAKKKYVDSGLGTPDSSKRVTPK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRR-PEDFPERTXXXX 540
           AT  SYQGLRASK GSQKK   KGS TKW KSHSNSKEK +DHK+RR PE   ER     
Sbjct: 481 ATNVSYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRRGPEKTSER----- 540

Query: 541 XXXXXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 598
                             NRKAVA A++NGIA PKQ G+KRKSDSR+P SSHRNKRVKRF
Sbjct: 541 ----------KGKRPAVANRKAVAMATKNGIATPKQTGLKRKSDSRSPGSSHRNKRVKRF 566

[Close]

BLAST of Carg23389 vs. TAIR10
Match: AT5G46840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 335.5 bits (859), Expect = 6.7e-92
Identity = 193/354 (54.52%), Postives = 247/354 (69.77%), Query Frame = 0


Query: 162 DEQRSDSKLGVDVKLTKEXXXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKA 221
           DE+ + S+   +  L  +           EYE KKYG+ E+ E +        VG+KRK 
Sbjct: 98  DEKETISEAVEESGLVSKRKKRKRDEIENEYETKKYGSVEMKEKK--------VGEKRKK 157

Query: 222 MDDFSEMLITKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLAN 281
            D+ ++ +++KEGFDDESKLLRTVFVGNLPLKVKKK + KEFS+FGE+ESVRIRSVP+ +
Sbjct: 158 ADEVADTMVSKEGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVD 217

Query: 282 SKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKK 341
           SK+ RKGAI+ K++NE A S HAYVVF+TE+SA ASL HNM++  GNH+RVDRACPPRKK
Sbjct: 218 SKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKK 277

Query: 342 LK-VGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKG 401
            K    + +YDPKRTVF+GNLPFDVKDEE+YQLF G  N+ +S+EAVRVIRDP++NIGKG
Sbjct: 278 QKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKG 337

Query: 402 FAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRA 461
            AYV FKT+EAAN V+    L+LR+R LR+   KP+   TP K+++NPS E    A+KR 
Sbjct: 338 IAYVLFKTREAANLVLKKGYLKLRERELRISRVKPD---TPSKRKSNPS-EAYSPAQKRL 397

Query: 462 VDSGLRTPDSSKRVTPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSK 515
               + TP      T KA + SYQG+RASK G  KK       T + KS + +K
Sbjct: 398 QKDKVVTPTP----TGKANL-SYQGVRASKSGDDKK-------TPYQKSSAQTK 427

[Close]

BLAST of Carg23389 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 8.4e-10
Identity = 53/221 (23.98%), Postives = 104/221 (47.06%), Query Frame = 0


Query: 244 TVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSH 303
           TV+VG L  ++ ++ L + F Q G + +V +    + N                    ++
Sbjct: 26  TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTN-----------------LHQNY 85

Query: 304 AYVVFKTEESAQASL-THNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLP 363
            ++ +++EE A  ++   NM    G  IRV++A   +K L VG++        +F+GNL 
Sbjct: 86  GFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN--------LFIGNLD 145

Query: 364 FDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ 423
            DV ++ LY  F     + S+    +++RDP+    +GF ++ + + EA+++ I +   Q
Sbjct: 146 PDVDEKLLYDTFSAFGVIASN---PKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQ 205

Query: 424 -LRDRALRLFHA-----KPNLTSTPLKK---RNNPSTEVDR 455
            L +R + + +A     K     TP ++     NP+ +  R
Sbjct: 206 YLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSR 218

[Close]

BLAST of Carg23389 vs. TAIR10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-09
Identity = 62/216 (28.70%), Postives = 87/216 (40.28%), Query Frame = 0


Query: 205 DEVEGSGGTVVGKKRKAMDDF-SEMLITKEGFDDESKLLRTVFVGNLPLKVKKKALGKEF 264
           +E EG  G++ G      + F SE  +      +E+KL    FVGNLP  V  +AL   F
Sbjct: 78  EEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKL----FVGNLPYDVDSQALAMLF 137

Query: 265 SQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY---VVFKTEESAQASLTH 324
            Q G +E                   I     N D D S  +    +   EE+ +A    
Sbjct: 138 EQAGTVE-------------------ISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 197

Query: 325 NMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGMENV 384
           N     G  + V+RA  PR         +YD    ++VGNLP+DV    L +LF      
Sbjct: 198 NSFEVNGRRLTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF---SEH 257

Query: 385 GSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVI 417
           G  V+A RV+ D      +GF +V    +   N  I
Sbjct: 258 GKVVDA-RVVSDRETGRSRGFGFVQMSNENEVNVAI 265

[Close]

BLAST of Carg23389 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-08
Identity = 58/198 (29.29%), Postives = 83/198 (41.92%), Query Frame = 0


Query: 237 DESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVN 296
           +E+KL    FVGNL   V  +AL   F Q G +E                   I     N
Sbjct: 148 EEAKL----FVGNLAYDVNSQALAMLFEQAGTVE-------------------IAEVIYN 207

Query: 297 EDADSSHAY---VVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPK 356
            + D S  +    +   +E+  A    N     G  + V++A  PR      +  +Y+P 
Sbjct: 208 RETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA-PRGSRPERAPRVYEPA 267

Query: 357 RTVFVGNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAAN 416
             V+VGNLP+DV +  L QLF      G  VEA RV+ D      +GF +V     +  N
Sbjct: 268 FRVYVGNLPWDVDNGRLEQLF---SEHGKVVEA-RVVYDRETGRSRGFGFVTMSDVDELN 317

Query: 417 SVINNQKLQ-LRDRALRL 431
             I+    Q L  RA+R+
Sbjct: 328 EAISALDGQNLEGRAIRV 317

[Close]

BLAST of Carg23389 vs. TAIR10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-07
Identity = 57/207 (27.54%), Postives = 87/207 (42.03%), Query Frame = 0


Query: 234 GFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSK 293
           GFD  +   R+V+VGN+  +V +  L + F+  G +ES                    SK
Sbjct: 52  GFDPST--CRSVYVGNIHTQVTEPLLQEIFTSTGPVES--------------------SK 111

Query: 294 KVNEDADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPK 353
            + +D  S      F    +A A L+ N     G  I+V+ A    ++    S       
Sbjct: 112 LIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSS------H 171

Query: 354 RTVFVGNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAAN 413
             +FVG+L  +V D  LYQ F    +V SS    RV+ D      +GF +V F+ ++ A 
Sbjct: 172 FNIFVGDLSPEVTDATLYQSF----SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 226

Query: 414 SVINNQKLQ-LRDRALRLFHAKPNLTS 440
           + IN    + L  R +R   A    TS
Sbjct: 232 TAINEMNGKWLSSRQIRCNWATKGATS 226

[Close]

BLAST of Carg23389 vs. Swiss-Prot
Match: sp|O13741|NOP12_SCHPO (Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop12 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-28
Identity = 89/256 (34.77%), Postives = 138/256 (53.91%), Query Frame = 0


Query: 213 TVVGKKRKAMDDFSEMLITKEGFDDESKLLRTVFVGNLPLKV-----KKKALGKEFSQFG 272
           +V+ ++    D  SE  + ++  ++  K  +TVFV NLP +V       K L K F QFG
Sbjct: 134 SVLEERTSQEDVKSEREVAEKLANELEKSDKTVFVNNLPARVVTNKGDYKDLTKHFRQFG 193

Query: 273 EIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLTHNMAVFAG 332
            ++S+R RS+  + +  PRK A   KK + + D+ +AY+VF+   SA+++L+ N  +F  
Sbjct: 194 AVDSIRFRSLAFSEA-IPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSALSLNGTMFMD 253

Query: 333 NHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLF--CGMENVGSSVE 392
            H+RVD    P  +         D KR VFVGNL F+ ++E L++ F  CG      S++
Sbjct: 254 RHLRVDSVSHPMPQ---------DTKRCVFVGNLAFEAEEEPLWRYFGDCG------SID 313

Query: 393 AVRVIRDPNVNIGKGFAYVFFK-TKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKK 452
            VR++RDP  N+GKGFAY+ FK T     +++ N+K     R LR+  AK   T      
Sbjct: 314 YVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKS--TKPKSIT 371

Query: 453 RNNPSTEVDRSAKKRA 461
           R+    E  R+ + RA
Sbjct: 374 RSKRGDEKTRTLQGRA 371

[Close]

BLAST of Carg23389 vs. Swiss-Prot
Match: sp|Q5M9F1|RBM34_RAT (RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-27
Identity = 87/231 (37.66%), Postives = 125/231 (54.11%), Query Frame = 0


Query: 236 DDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKV 295
           ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A + +K 
Sbjct: 176 EERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKF 235

Query: 296 NEDADSSHAYVVFKTEESAQASLTHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYDPKR 355
           + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S      KR
Sbjct: 236 HPDQKSINAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA----------SETASRDKR 295

Query: 356 TVFVGNLPFDVKDEELYQLF--CGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAA 415
           +VFVGNLP+ V +  L + F  CG      S+ AVR++R+P   +G+GF YV F+  +A 
Sbjct: 296 SVFVGNLPYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAV 355

Query: 416 NSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRN-NPSTEVDRSAKKRAVD 463
           +  +     +L  R LR+     ++    LK++N NPS + D S  K+ ++
Sbjct: 356 HLALKLNNSELMGRKLRVMR---SVNKEKLKQQNSNPSVKKDGSKSKQRLN 387

[Close]

BLAST of Carg23389 vs. Swiss-Prot
Match: sp|Q8C5L7|RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-27
Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 0


Query: 236 DDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKV 295
           ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A + +K 
Sbjct: 182 EERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKF 241

Query: 296 NEDADSSHAYVVFKTEESAQASLTHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYDPKR 355
           + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S      KR
Sbjct: 242 HPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA----------SETASRDKR 301

Query: 356 TVFVGNLPFDVKDEELYQLF--CGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAA 415
           +VFVGNLP+ ++D  L + F  CG      S+ AVR++R+P   +G+GF YV F+  +A 
Sbjct: 302 SVFVGNLPYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAV 361

Query: 416 NSVINNQKLQLRDRALRLFHA 434
           +  +     +L  R LR+  +
Sbjct: 362 HLALKLNNSELMGRKLRVMRS 366

[Close]

BLAST of Carg23389 vs. Swiss-Prot
Match: sp|Q5AHI7|NOP12_CANAL (Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NOP12 PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 3.6e-26
Identity = 78/205 (38.05%), Postives = 114/205 (55.61%), Query Frame = 0


Query: 243 RTVFVGNLPL-----KVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNE 302
           RTVFVGN+P      K+  K     F  +G+I+S+R RS+   +   PRK A   K +++
Sbjct: 160 RTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHK 219

Query: 303 DADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVF 362
             DS +AY+V+K + ++ A+   N  VF  +H+RVD    P  K         D KRT+F
Sbjct: 220 SRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHPAPK---------DNKRTIF 279

Query: 363 VGNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANS--V 422
           VGNL F+ K+E L++ F     +   VE+VR+IRD   N+GKGFA V FK   + N   +
Sbjct: 280 VGNLDFEEKEETLWKYF--NSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALL 339

Query: 423 INNQKL----QLRDRALRLFHAKPN 437
           +N++ L    Q + R LR+  AK N
Sbjct: 340 LNDKPLETGTQKKGRKLRISRAKSN 352

[Close]

BLAST of Carg23389 vs. Swiss-Prot
Match: sp|P42696|RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-25
Identity = 95/293 (32.42%), Postives = 148/293 (50.51%), Query Frame = 0


Query: 219 RKAMDDFSEMLIT---KEGFDDESKLL---RTVFVGNLPLKVKKKALGKEFSQFGEIESV 278
           RK +DD  + +++   K   + E + L   RTVFVGNLP+   KK L   F ++G+IESV
Sbjct: 155 RKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESV 214

Query: 279 RIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLTHNMAVFA-GNHIR 338
           R RS+  A     +K A + +K++ D  + +AYVVFK E +A  +L  N A  A G  IR
Sbjct: 215 RFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIR 274

Query: 339 VDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDE--ELYQLFCGMENVGSSVEAVRV 398
           VD A     +           KR+VFVGNLP+ V++   E + L CG      S+ AVR+
Sbjct: 275 VDLASETSSR----------DKRSVFVGNLPYKVEESAIEKHFLDCG------SIMAVRI 334

Query: 399 IRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPS 458
           +RD    IGKGF YV F+  ++ +  +     +L  R LR+     ++     K++N+  
Sbjct: 335 VRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMR---SVNKEKFKQQNSNP 394

Query: 459 TEVDRSAKKRAVDSGLRTPDSSKRVTPKATVASYQG--LRASKPGSQKKNQAK 501
              + S  K+ ++   +T +      PK+     +   L+  K G +K  + K
Sbjct: 395 RLKNVSKPKQGLNFTSKTAEGH----PKSLFIGEKAVLLKTKKKGQKKSGRPK 424

[Close]

BLAST of Carg23389 vs. TrEMBL
Match: tr|A0A0A0L184|A0A0A0L184_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009460 PE=4 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 2.0e-191
Identity = 402/601 (66.89%), Postives = 445/601 (74.04%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MG  K   PK+ SEE    ++  SVF+TLFG+ G E+  VSIFST+NPFRRK + S P  
Sbjct: 1   MGNNKITDPKNPSEETPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPP 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
                               SRKK K+KRVG+DLDS E GVK+SSE+K XXXXXXXXXXX
Sbjct: 61  PAE----------------ISRKKGKDKRVGIDLDSTE-GVKTSSEIKXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                +++                K+ G  +GSE S +         SKLG +VKL KE 
Sbjct: 121 XXXXXVDDDGERGFESQGGLKDSSKKKGTVLGSETSEK---SHGFEGSKLGENVKLMKER 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                     EYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKVNED 300
           LLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+NE 
Sbjct: 241 LLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEA 300

Query: 301 ADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFV 360
           ADSSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRTVFV
Sbjct: 301 ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFV 360

Query: 361 GNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINN 420
           GNLPFDVKDEELYQLFCG++N+GSSVEAVRVIRDP VN+GKGFAYVFFKT+EAANSV+NN
Sbjct: 361 GNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNN 420

Query: 421 QKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRVTPK 480
           Q L+LR R LRLFH K N TSTP KKRN P TE DR+ AKK+ VDSGL TPDSSKRVTPK
Sbjct: 421 QLLELRGRTLRLFHTKTNPTSTPFKKRNRPPTEADRTPAKKKYVDSGLGTPDSSKRVTPK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRR-PEDFPERTXXXX 540
           AT  SYQGLRASK GSQKK   KGS TKW KSHSNSKEK +DHK+RR PE   ER     
Sbjct: 481 ATNVSYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRRGPEKTSER----- 540

Query: 541 XXXXXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 598
                             NRKAVA A++NGIA PKQ G+KRKSDSR+P SSHRNKRVKRF
Sbjct: 541 ----------KGKRPAVANRKAVAMATKNGIATPKQTGLKRKSDSRSPGSSHRNKRVKRF 566

[Close]

BLAST of Carg23389 vs. TrEMBL
Match: tr|B7SHL1|B7SHL1_CUCSA (Putative RNA recognition motif-containing protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.3e-190
Identity = 401/601 (66.72%), Postives = 444/601 (73.88%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MG  K   PK+ SEE    ++  SVF+TLFG+ G E+  VSIFST+NPFRRK + S P  
Sbjct: 1   MGNNKITDPKNPSEETPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPP 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
                               SRKK K+KRVG+DLDS E GVK+SSE+K XXXXXXXXXXX
Sbjct: 61  PAE----------------ISRKKGKDKRVGIDLDSTE-GVKTSSEIKXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                +++                K+ G  +GSE S +         SKLG +VKL KE 
Sbjct: 121 XXXXXVDDDGERGFESQGGLKDSSKKKGTVLGSETSEK---SHGFEGSKLGENVKLMKER 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                     EYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKVNED 300
           LLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+NE 
Sbjct: 241 LLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEA 300

Query: 301 ADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFV 360
           ADSSHAYVVFKTEESA ASL+HNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRTVFV
Sbjct: 301 ADSSHAYVVFKTEESAWASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFV 360

Query: 361 GNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINN 420
           GNLPFDVKDEELYQLFCG++N+GSSVEAVRVIRDP VN+GKGFAYVFFKT+EAANSV+NN
Sbjct: 361 GNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNN 420

Query: 421 QKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRVTPK 480
           Q L+LR R LRLFH K N TSTP KKRN P TE DR+ AKK+ VDSGL TPDSSKRVTPK
Sbjct: 421 QLLELRGRTLRLFHTKTNPTSTPFKKRNRPPTEADRTPAKKKYVDSGLGTPDSSKRVTPK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRR-PEDFPERTXXXX 540
           AT  SYQGLRASK GSQKK   KGS TKW KSHSNSKEK +DHK+RR PE   ER     
Sbjct: 481 ATNVSYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRRGPEKTSER----- 540

Query: 541 XXXXXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 598
                             NRKAVA A++NGIA PKQ G+KRKSDSR+P SSHRNKRVKRF
Sbjct: 541 ----------KGKRPAVANRKAVAMATKNGIATPKQTGLKRKSDSRSPGSSHRNKRVKRF 566

[Close]

BLAST of Carg23389 vs. TrEMBL
Match: tr|A0A1S3BK91|A0A1S3BK91_CUCME (nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.0e-187
Identity = 398/601 (66.22%), Postives = 446/601 (74.21%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGK K    K+  +E+   + P SVF+TLFG+ G E+  VSIFS++NPFRRKD+ S    
Sbjct: 1   MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPSVSIFSSDNPFRRKDSDSIS-P 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
            +AE                SR K KEKRVG+DLDS E GVK+      XXXXXXXXXXX
Sbjct: 61  PLAE---------------NSRTKGKEKRVGIDLDSTE-GVKTXXXXXXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                +++                K+ G  +GSE S + +  ++   SKLG +VKL KE 
Sbjct: 121 XXXXNVDDDGERGFESQGGLKDNRKK-GTALGSETSEKSRGFDR---SKLGENVKLMKER 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                     EYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEML+TKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKVNED 300
           LLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+NE 
Sbjct: 241 LLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEA 300

Query: 301 ADSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFV 360
           ADSSHAYVVFKTEESAQASL+HNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRTVFV
Sbjct: 301 ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFV 360

Query: 361 GNLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINN 420
           GNLPFDVKDEELYQLFCG++ +GSSVEAVRVIRDP VN+GKGFAYVFFKT+EA NSV+NN
Sbjct: 361 GNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAVNSVVNN 420

Query: 421 QKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRVTPK 480
           QKL+LR R LRLFHAK N TSTP KKRN P TE D + AKK AVDSGL TPDSSKRVTPK
Sbjct: 421 QKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRVTPK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRR-PEDFPERTXXXX 540
           AT ASYQGLRASK GSQKK   KGS TKW KSHSNSKEK +DHK+R+ PE   ER     
Sbjct: 481 ATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRKGPEKTSER----- 540

Query: 541 XXXXXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 598
                             NRKAVANA++NGIA PKQ G+KRKSDSR+P SSHRNKRVK+F
Sbjct: 541 ----------KGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKKF 565

[Close]

BLAST of Carg23389 vs. TrEMBL
Match: tr|A0A2P5EPP3|A0A2P5EPP3_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_167980 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.5e-109
Identity = 296/597 (49.58%), Postives = 365/597 (61.14%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKK   P+S+ +   +  A + +F+TLFG+  AES  VSIFS +NPFRRK      V 
Sbjct: 1   MGKKKPKDPESTPKSDVVSPA-TDIFKTLFGDAHAESAAVSIFSDDNPFRRKPQEK--VL 60

Query: 61  AVAEKFPSGGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXXX 120
             +     GG++   + +++ RK++KE++          G  S +    XXXXXXXXXXX
Sbjct: 61  EASGNPSDGGSESIEVAELKKRKRDKEEKPSF-------GEASETXXXXXXXXXXXXXXX 120

Query: 121 LDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEX 180
                   XXXXXXXXXXXXXXXX     + G E   E   D+QR   K           
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXARKYGVEVDDEEGDDKQRLAGK----------- 180

Query: 181 XXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDESK 240
                                             VG+KRK +D+ ++MLI+KEGFDDE+K
Sbjct: 181 ----------------------------------VGEKRKTLDNPADMLISKEGFDDETK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRT+FVGNLPL VKKKAL KEFSQFGE+ESVRIRSVP+ ++KKPRKGA+++K+ +E AD
Sbjct: 241 LLRTLFVGNLPLTVKKKALIKEFSQFGEVESVRIRSVPITDTKKPRKGAVITKQFHEAAD 300

Query: 301 SSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           S HAYVVFKTE+SAQASL+HNMAV  G+HIRVDRACPPRKK+K     +YD KRTVFVGN
Sbjct: 301 SVHAYVVFKTEQSAQASLSHNMAVVGGHHIRVDRACPPRKKMKGDEISLYDHKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEE+YQ+FCG+ N+ SSVE VR+IRDPN N+GKGFAYV F+T+EAA SV+  + 
Sbjct: 361 LPFDVKDEEVYQVFCGINNMESSVEGVRIIRDPNTNLGKGFAYVLFRTREAATSVVKKRN 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480
           LQLRDR LRLFHAKP+  STP  KR NP+     S  K+    G  T D SK+V   A+ 
Sbjct: 421 LQLRDRELRLFHAKPD--STP-SKRMNPTPAATSSPTKKL--RGFETADGSKKVFANAS- 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTXXXXXXXX 540
            SYQGLRASK G QKK        +  K  S +K+  V+ K +RP               
Sbjct: 481 TSYQGLRASKSGVQKK---VAKSRRPDKFSSTTKKGVVERKGKRP--------------- 506

Query: 541 XXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 598
                          RKA A    N   A KQ G+KRK DSRTP+SSHRNK+VK+FR
Sbjct: 541 -----------AVAARKAKAKV-MNESGASKQAGIKRKMDSRTPDSSHRNKKVKKFR 506

[Close]

BLAST of Carg23389 vs. TrEMBL
Match: tr|A0A2P5BHR3|A0A2P5BHR3_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_238350 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.5e-106
Identity = 293/597 (49.08%), Postives = 364/597 (60.97%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPVA 60
           MGKKK   P+S+ +   + S P+ +F+TLFG+  AES  VSIFS +N FRRK       A
Sbjct: 1   MGKKKPKDPESTPKSDVV-SPPTDIFKTLFGDAHAESAAVSIFSDDNRFRRKPQEK---A 60

Query: 61  AVAEKFPS-GGADDHTIDDVRSRKKNKEKRVGMDLDSAENGVKSSSEVKKXXXXXXXXXX 120
             A   PS GG +   + +++ RK++KE+R  +       G  S + ++ XXXXXXXXXX
Sbjct: 61  LEASGNPSDGGPESIEVAELKKRKRDKEERQSL-------GEASETPLEXXXXXXXXXXX 120

Query: 121 XLDNEVIENXXXXXXXXXXXXXXXXKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKE 180
           X        XXXXXXXXXXXXXXXX     + G E   E   D+QR   K          
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXARKYGVEVDDEEGEDKQRLAGK---------- 180

Query: 181 XXXXXXXXXXXEYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLITKEGFDDES 240
                                              VG+KRK +D+ ++ML++KEGFDDE+
Sbjct: 181 -----------------------------------VGEKRKTLDNPADMLVSKEGFDDET 240

Query: 241 KLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDA 300
           KLLRTVFVGNLPL VKKKAL KEFSQFGE+ESVRIRSVP+ ++KKPRKGA+++K+ +E A
Sbjct: 241 KLLRTVFVGNLPLTVKKKALIKEFSQFGEVESVRIRSVPITDTKKPRKGAVITKQFHEAA 300

Query: 301 DSSHAYVVFKTEESAQASLTHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVG 360
           DS HAYVVFKTE+ AQASL+HNMAV  G+HIRVDRACPPRKK+K     +YD KRTVFVG
Sbjct: 301 DSVHAYVVFKTEQPAQASLSHNMAVVGGHHIRVDRACPPRKKMKGDEISLYDHKRTVFVG 360

Query: 361 NLPFDVKDEELYQLFCGMENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQ 420
           NLPFDVKDEE+YQ+FCG+ ++ SSVE VR+IRDPN N+GKGFAYV F+T+EAA SV+  +
Sbjct: 361 NLPFDVKDEEVYQVFCGINSMESSVEGVRIIRDPNTNLGKGFAYVLFRTREAATSVVKKR 420

Query: 421 KLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKAT 480
            L+LRDR LRLFHAK +  STP K+ N    E   S  K+    G  T D SK+V   A+
Sbjct: 421 NLKLRDRGLRLFHAKSD--STPSKRMNPTPAEKASSPTKKL--RGFETADGSKKVFAHAS 480

Query: 481 VASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPERTXXXXXXX 540
             SYQGLRASK G QKK        +  K  S +K+  V+ K +RP              
Sbjct: 481 -TSYQGLRASKSGVQKK---VAKSRRPDKFSSTTKKGVVERKGKRP-------------- 506

Query: 541 XXXXXXXXXXXXXXXNRKAVANASRNGIAAPKQGGVKRKSDSRTPESSHRNKRVKRF 597
                           RKA A    N   A KQ G+KRK  SRTP+SSHRNK+VK+F
Sbjct: 541 ------------AVAARKAKAKV-MNESGASKQAGIKRKMVSRTPDSSHRNKKVKKF 506

The following BLAST results are available for this feature:

BLAST of Carg23389 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922379.1	4.6e-280	97.32	nucleolar protein 12 [Cucurbita moschata]	[more]
XP_023540437.1	4.3e-278	96.65	nucleolar protein 12 [Cucurbita pepo subsp. pepo]	[more]
XP_023005336.1	1.9e-273	95.99	nucleolar protein 12 [Cucurbita maxima]	[more]
KGN55740.1	3.0e-191	66.89	hypothetical protein Csa_3G009460 [Cucumis sativus]	[more]
NP_001267538.1	2.0e-190	66.72	uncharacterized LOC101206555 [Cucumis sativus] >ACA50448.1 putative RNA recognit...	[more]

BLAST of Carg23389 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46840.1	6.7e-92	54.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	8.4e-10	23.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.4e-09	28.70	chloroplast RNA-binding protein 31B	[more]
AT4G24770.1	1.6e-08	29.29	31-kDa RNA binding protein	[more]
AT3G14100.1	1.3e-07	27.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg23389 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13741\|NOP12_SCHPO	1.0e-28	34.77	Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]
sp\|Q5M9F1\|RBM34_RAT	1.1e-27	37.66	RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1	[more]
sp\|Q8C5L7\|RBM34_MOUSE	7.2e-27	38.81	RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=1	[more]
sp\|Q5AHI7\|NOP12_CANAL	3.6e-26	38.05	Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=2375...	[more]
sp\|P42696\|RBM34_HUMAN	4.0e-25	32.42	RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2	[more]

BLAST of Carg23389 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L184\|A0A0A0L184_CUCSA	2.0e-191	66.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009460 PE=4 SV=1	[more]
tr\|B7SHL1\|B7SHL1_CUCSA	1.3e-190	66.72	Putative RNA recognition motif-containing protein OS=Cucumis sativus OX=3659 PE=...	[more]
tr\|A0A1S3BK91\|A0A1S3BK91_CUCME	1.0e-187	66.22	nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1	[more]
tr\|A0A2P5EPP3\|A0A2P5EPP3_9ROSA	2.5e-109	49.58	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_167980 P...	[more]
tr\|A0A2P5BHR3\|A0A2P5BHR3_PARAD	1.5e-106	49.08	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2383...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034220	RBM34_RRM1
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23389-RA	Carg23389-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 486..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 434..597
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..466
None	No IPR available	PANTHER	PTHR45391	FAMILY NOT NAMED	coord: 1..597
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 244..333 e-value: 2.7E-10 score: 50.2 coord: 355..431 e-value: 7.6E-15 score: 65.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 245..284 e-value: 1.7E-5 score: 24.4 coord: 356..428 e-value: 1.4E-10 score: 40.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 243..337 score: 13.089
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 354..435 score: 16.227
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 346..440 e-value: 3.8E-19 score: 70.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 240..342 e-value: 1.5E-17 score: 65.5
IPR034220	RBM34, RNA recognition motif 1	CDD	cd12394	RRM1_RBM34	coord: 243..333 e-value: 5.90504E-38 score: 134.31
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 348..444
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 238..344

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23389	Csa3G009460	Cucumber (Chinese Long) v2	carcuB0977
Carg23389	ClCG10G001470	Watermelon (Charleston Gray)	carwcgB0940
Carg23389	CSPI03G01490	Wild cucumber (PI 183967)	carcpiB1000
Carg23389	CmoCh06G006520	Cucurbita moschata (Rifu)	carcmoB1294
Carg23389	Lsi07G011810	Bottle gourd (USVL1VR-Ls)	carlsiB881
Carg23389	Cp4.1LG08g08710	Cucurbita pepo (Zucchini)	carcpeB1337
Carg23389	CsGy3G001380	Cucumber (Gy14) v2	carcgybB0950
Carg23389	CsaV3_3G001550	Cucumber (Chinese Long) v3	carcucB1005
Carg23389	Cla97C10G186080	Watermelon (97103) v2	carwmbB1014
Carg23389	Bhi11G000013	Wax gourd	carwgoB1130

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23389	Cucurbita moschata (Rifu)	carcmoB1291
Carg23389	Cucurbita moschata (Rifu)	carcmoB1292
Carg23389	Cucurbita moschata (Rifu)	carcmoB1293
Carg23389	Cucurbita pepo (Zucchini)	carcpeB1334
Carg23389	Cucurbita pepo (Zucchini)	carcpeB1335
Carg23389	Cucurbita pepo (Zucchini)	carcpeB1336
Carg23389	Wild cucumber (PI 183967)	carcpiB1001
Carg23389	Wild cucumber (PI 183967)	carcpiB1002
Carg23389	Cucumber (Chinese Long) v2	carcuB0979
Carg23389	Cucumber (Chinese Long) v2	carcuB0978
Carg23389	Cucumber (Chinese Long) v3	carcucB1006
Carg23389	Cucumber (Chinese Long) v3	carcucB1007
Carg23389	Bottle gourd (USVL1VR-Ls)	carlsiB880
Carg23389	Bottle gourd (USVL1VR-Ls)	carlsiB882
Carg23389	Melon (DHL92) v3.5.1	carmeB0942
Carg23389	Melon (DHL92) v3.5.1	carmeB0943
Carg23389	Melon (DHL92) v3.6.1	carmedB0948
Carg23389	Melon (DHL92) v3.6.1	carmedB0949
Carg23389	Watermelon (Charleston Gray)	carwcgB0939
Carg23389	Watermelon (Charleston Gray)	carwcgB0941
Carg23389	Watermelon (97103) v1	carwmB0964
Carg23389	Watermelon (97103) v1	carwmB0965
Carg23389	Watermelon (97103) v1	carwmB0966
Carg23389	Watermelon (97103) v2	carwmbB1015
Carg23389	Watermelon (97103) v2	carwmbB1016
Carg23389	Wax gourd	carwgoB1129
Carg23389	Wax gourd	carwgoB1131
Carg23389	Silver-seed gourd	carcarB486
Carg23389	Silver-seed gourd	carcarB611
Carg23389	Silver-seed gourd	carcarB650
Carg23389	Cucumber (Gy14) v2	carcgybB0951
Carg23389	Cucumber (Gy14) v2	carcgybB0952
Carg23389	Cucumber (Gy14) v1	carcgyB1082
Carg23389	Cucumber (Gy14) v1	carcgyB1083
Carg23389	Cucurbita maxima (Rimu)	carcmaB1329
Carg23389	Cucurbita maxima (Rimu)	carcmaB1330
Carg23389	Cucurbita maxima (Rimu)	carcmaB1331
Carg23389	Cucurbita maxima (Rimu)	carcmaB1332