Carg23310 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23310
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Holocarboxylase synthetase
Location	Cucurbita_argyrosperma_scaffold_188 : 217340 .. 220141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGAAGAGGAAATCTATTGCTACCAGCCTCGACGAGGTAGATCGGACCATGTACACCTCTTTTTGCAGCGGGGCCAACTCTCTCTCGCAGCTTTACACCCAGGCTATGAACCACCAGAAGCTTTCTTTTCAAGCCGGAGAACGTCATGCGATGGTGTGGAATTTCATCTTTTTCCCTCCTCCTTTTGGACTTTATCATGTTTTTCTGTTTCTCTTTTGTGTGCATGAAATTGATTTTGATAGACGCGGTTTTTGGTTATTGTTTGTTTCTTCTCTATTTGATATGAGTTCTTATTTTGGACGATTCCGGGTAGTTTAATGTATTCTGAGGATTAAGGTAGTATGAATCATGCTTATTTCTGCTTAAAAGTCTGAGCATTCGATTGTGAAATACGATGAAAGTATAATATTTTCCATCGTTATTTGTTCTGCCTTGAACCTTTTGATTCTTGATTGGAAATTTATACCGTTCTTGCATTGTGATGAGGGGTCTATTTATGGTTAACTTTTGCAAAGGCGATGACTGGAATTGAATGTTCTATGTTGTCCTTTTGCTTCAAATTTGAAGGTTTCGAATTTATCCTTCGTTCTTTAAGGATGTTTGATGGGTAGGCTAACATAATAGATGCTATTGTATTCACTATAAATGATGCAAGACATAGTTGAATGGATATATAATGTGAAATTAAACCAGCCTTGATTTCATGGAAAGAAAAATCAAAGGTCTGTTTAGGAAACTTCTTGGGGTTAATCTCTACTACTGGTACATGTGTCGATGTCTCATGATCAACAAACATTTTGTAGTTTTTTTAAAGCCATATTCTCAACGTTCTCAGAAATCCTGCCAAAACTTGAACGAAGCATTTTGGTTCTTTTATGCCTTTCTGAATTACACTGATACAAGTACTTTAGGAAGATAAGTCAAACAACCAAAGACAATGGGGATTGGATATTAGAGGAATACCAGAAAAAAAAATAACATAGTTTATGATTTTGTTTATGAGGGGATCAAATTAAGAGAAGATAAATAGATTTTCTATGACATATTCGATTCCAGAAAAAATTAAGGGGATCAAATTATGATATTAGAGGAATACCAGAAAAAAAACAATACATATTCGATTCCAAGTTTCTTTAGATCAATATTTTGAAGGCTTTGGCTAATGGATAAAGAAGACATTGAATGAGAAGGAACAAGAGTAGAACAACAATATTCGAGTTGACTAAGCTTTATTACCCTTTTTGGTGTTCCCTTCCGATTCACTTTGCAATTATGCTCCTTTCATTAATATGAAGAAAAAAAAGGGTAATCTTCAATTATTCGTGAATGTAGAATGCAAAGAAACATCCTCTTTTGTTTCTTTCTCTTATTTTCATGATATTTGGAGTTTAGTCCATAGAATTTTGCAGCTCTAGATAGGCAGTAATTTATTTTCAATTAGTTCATTTTTTGATTCTTACATCTCTGGATTTAAATTGGAGAAGAAGAGTAAGTTTCATTCTTTTGATAACAGCTTGCAATGGCTAATATTTTCTCTTGTTGAGCTTCTTCAAGTTCCTTTGTATATCAAATATGTTTAAGGCTGGTTTTGAAAAAGGTGTGTTGTTGTTAGAAGAACTTGTTAATCATTTCTAGAATGAATCTTTTTGATAACTGAATTGCAATGGTTGATGCTTCAAGGGATGAAATTGATGGAGAATCGTACGCATAACCCATTCCATGTGGACAAATTCTGTTTTAGATGTAGACCAAAAATAATTATTTAGTTGTCGACCACATATCTTCATTTAGACATAAAAATCAGAAGGAAGTTGATGGATTTTAAAATATGATAAAAGTCTTGAATGTTCATAGACATTTGTCTAAGTGGCTATATCTATAATGTTTTCCACCCTTATGGTTCTGCGTTATACCATTTGATTCCAAATCGAGAATATACATTGGTTTTACATTGTGATGAGGAACTTTTTCATCTTTAAGAACGTTAAAAAGTGATTCCTTGAAAACATTGTTTAAGGAATCACATAGAGTCAAATGTACTGCATTTCCCTTTTGTTTCTAATTTGAGTGATTCATGTTTATGCTTTGGTTCTGATGGGATGTCTTGGGATGTTTAGTGATTAGGCTAGCAGTACAGGAACTATATTATATTCACTATAAATGGATACAAGACATCGTTGACTGGATATGTAAGATAACATAATTTAAGCCATTATTTAAAAAAAAATAAAAATCAAGGTTGGTTTAAGAAACTTCTTAGGGCTTCATCTTAAAAAGCAATATTGAAACCTAAAATTTAGCAGATCAATTTCTTGGAAGTAAAAAATCAACGTTTCTATAAATGCTTGGCTGCAATAAGCCAGTTATTCCTGTGGGAGCTTTTTCAATGCCCCTAGCTTCAAATTCTAAAGGTCTAAAGAATTGATAAGGTACACTTCCTAATTCATATTTGATTTGTAATCAGAACAAGACCAGATTTGGGAAATTAAGTATGGAAGCGGATTTGGGAGATTAAAAAGGAGATGATGACTGTGTATGGATAGGTAGATAAATTTTGAATGTGTACAAGTCTTTAGTGAAGTGGGTCAGAAGAGACTCAGTGGTTGTACGACACTCGAAGCCGCCGTCGCTGCCTTCCCACGGAAGGCAAAGAGTCGCGACCTCTGGCGCCGTGCCAAGGTGGGGAAGACGAAGTTTTTTGCGAACAACACATTGGAAGACGAAGAGTCTCGTCTAACTCGCCGCACAATGACAGAACCAGCGAGCCGCTCCTCCGACCACAGAAGACCATGTTGA

mRNA sequence

ATGGCTAAGAAGAGGAAATCTATTGCTACCAGCCTCGACGAGGTAGATCGGACCATGTACACCTCTTTTTGCAGCGGGGCCAACTCTCTCTCGCAGCTTTACACCCAGGCTATGAACCACCAGAAGCTTTCTTTTCAAGCCGGAGAACGTCATGCGATGAAGAGACTCAGTGGTTGTACGACACTCGAAGCCGCCGTCGCTGCCTTCCCACGGAAGGCAAAGAGTCGCGACCTCTGGCGCCGTGCCAAGGTGGGGAAGACGAAGTTTTTTGCGAACAACACATTGGAAGACGAAGAGTCTCGTCTAACTCGCCGCACAATGACAGAACCAGCGAGCCGCTCCTCCGACCACAGAAGACCATGTTGA

Coding sequence (CDS)

ATGGCTAAGAAGAGGAAATCTATTGCTACCAGCCTCGACGAGGTAGATCGGACCATGTACACCTCTTTTTGCAGCGGGGCCAACTCTCTCTCGCAGCTTTACACCCAGGCTATGAACCACCAGAAGCTTTCTTTTCAAGCCGGAGAACGTCATGCGATGAAGAGACTCAGTGGTTGTACGACACTCGAAGCCGCCGTCGCTGCCTTCCCACGGAAGGCAAAGAGTCGCGACCTCTGGCGCCGTGCCAAGGTGGGGAAGACGAAGTTTTTTGCGAACAACACATTGGAAGACGAAGAGTCTCGTCTAACTCGCCGCACAATGACAGAACCAGCGAGCCGCTCCTCCGACCACAGAAGACCATGTTGA

Protein sequence

MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRLSGCTTLEAAVAAFPRKAKSRDLWRRAKVGKTKFFANNTLEDEESRLTRRTMTEPASRSSDHRRPC

Homology

[Close]

BLAST of Carg23310 vs. NCBI nr
Match: XP_022937000.1 (uncharacterized protein LOC111443422 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. NCBI nr
Match: XP_022976061.1 (uncharacterized protein LOC111476576 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. NCBI nr
Match: XP_023536218.1 (uncharacterized protein LOC111797455 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. NCBI nr
Match: XP_004139686.1 (PREDICTED: uncharacterized protein LOC101216474 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMY SFCS ANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. NCBI nr
Match: XP_008461917.1 (PREDICTED: uncharacterized protein LOC103500405 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMY SFCS ANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. TAIR10
Match: AT4G09830.1 (Uncharacterised conserved protein UCP009193)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          M KKRKS ATSLDEVDRT+Y SF + ANSLSQLYTQ+MNHQKLSFQAGERH +++L
Sbjct: 1  MGKKRKSTATSLDEVDRTVYASFRTAANSLSQLYTQSMNHQKLSFQAGERHGLEKL 56

[Close]

BLAST of Carg23310 vs. TAIR10
Match: AT5G64780.1 (Uncharacterised conserved protein UCP009193)

HSP 1 Score: 77.8 bits (190), Expect = 5.1e-15
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          M KKRKS AT LDEVDRTMY +F   ANSLSQLYT AMNHQ++SF AGER  M++L
Sbjct: 1  MGKKRKSEATRLDEVDRTMYGAFRGAANSLSQLYTHAMNHQRVSFLAGERRGMEKL 56

[Close]

BLAST of Carg23310 vs. TrEMBL
Match: tr|A0A1S3CFN6|A0A1S3CFN6_CUCME (uncharacterized protein LOC103500405 OS=Cucumis melo OX=3656 GN=LOC103500405 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKSIATSLDEVDRTMY SFCS ANSLSQLYTQAMNHQKLSFQAGERHAM++L
Sbjct: 1  MAKKRKSIATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAMEKL 56

[Close]

BLAST of Carg23310 vs. TrEMBL
Match: tr|A0A0A0K440|A0A0A0K440_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298765 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAM 54
          MAKKRKSIATSLDEVDRTMY SFCS ANSLSQLYTQAMNHQKLSFQAGERHAM
Sbjct: 1  MAKKRKSIATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAM 53

[Close]

BLAST of Carg23310 vs. TrEMBL
Match: tr|A0A0K9QJ39|A0A0K9QJ39_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_173480 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          MAKKRKS ATSLDEVDRTMYTSFCS ANSLSQLYTQAMNHQKLSFQAGERH +++L
Sbjct: 1  MAKKRKSTATSLDEVDRTMYTSFCSAANSLSQLYTQAMNHQKLSFQAGERHGLEKL 56

[Close]

BLAST of Carg23310 vs. TrEMBL
Match: tr|A0A2P2JQE9|A0A2P2JQE9_RHIMU (Uncharacterized protein LOC105139508 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          M KKRKSIATSLDEVDRTMY SFC GANSLSQLYTQAMNHQKLSFQAGERH +++L
Sbjct: 1  MGKKRKSIATSLDEVDRTMYASFCGGANSLSQLYTQAMNHQKLSFQAGERHGLEKL 56

[Close]

BLAST of Carg23310 vs. TrEMBL
Match: tr|A0A251MSQ7|A0A251MSQ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G040300 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-18
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMKRL 57
          M KKRKSIATSLDEVDR+MYTSFCS ANSLSQLYTQAMNHQKLSFQAGERHA+ ++
Sbjct: 1  MGKKRKSIATSLDEVDRSMYTSFCSAANSLSQLYTQAMNHQKLSFQAGERHALDKI 56

The following BLAST results are available for this feature:

BLAST of Carg23310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937000.1	2.5e-20	96.43	uncharacterized protein LOC111443422 [Cucurbita moschata]	[more]
XP_022976061.1	2.5e-20	96.43	uncharacterized protein LOC111476576 [Cucurbita maxima]	[more]
XP_023536218.1	2.5e-20	96.43	uncharacterized protein LOC111797455 [Cucurbita pepo subsp. pepo]	[more]
XP_004139686.1	4.8e-19	92.86	PREDICTED: uncharacterized protein LOC101216474 [Cucumis sativus]	[more]
XP_008461917.1	4.8e-19	92.86	PREDICTED: uncharacterized protein LOC103500405 [Cucumis melo]	[more]

BLAST of Carg23310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09830.1	2.2e-18	78.57	Uncharacterised conserved protein UCP009193	[more]
AT5G64780.1	5.1e-15	71.43	Uncharacterised conserved protein UCP009193	[more]

BLAST of Carg23310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFN6\|A0A1S3CFN6_CUCME	3.2e-19	92.86	uncharacterized protein LOC103500405 OS=Cucumis melo OX=3656 GN=LOC103500405 PE=...	[more]
tr\|A0A0A0K440\|A0A0A0K440_CUCSA	1.6e-18	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298765 PE=4 SV=1	[more]
tr\|A0A0K9QJ39\|A0A0K9QJ39_SPIOL	2.1e-18	89.29	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_173480 PE=4 SV=1	[more]
tr\|A0A2P2JQE9\|A0A2P2JQE9_RHIMU	3.5e-18	87.50	Uncharacterized protein LOC105139508 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A251MSQ7\|A0A251MSQ7_PRUPE	4.6e-18	87.50	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G040300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23310-RA	Carg23310-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..121
None	No IPR available	PANTHER	PTHR33675:SF3	SUBFAMILY NOT NAMED	coord: 1..56
None	No IPR available	PANTHER	PTHR33675	FAMILY NOT NAMED	coord: 1..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23310	Cla016394	Watermelon (97103) v1	carwmB0266
Carg23310	CmoCh09G011310	Cucurbita moschata (Rifu)	carcmoB0380
Carg23310	CmoCh01G010070	Cucurbita moschata (Rifu)	carcmoB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23310	Bottle gourd (USVL1VR-Ls)	carlsiB248
Carg23310	Melon (DHL92) v3.5.1	carmeB0276
Carg23310	Melon (DHL92) v3.6.1	carmedB0288
Carg23310	Watermelon (Charleston Gray)	carwcgB0267
Carg23310	Watermelon (97103) v2	carwmbB0284
Carg23310	Wax gourd	carwgoB0360
Carg23310	Cucumber (Gy14) v2	carcgybB0291
Carg23310	Cucumber (Gy14) v1	carcgyB0324
Carg23310	Cucurbita maxima (Rimu)	carcmaB0382
Carg23310	Cucurbita maxima (Rimu)	carcmaB0384
Carg23310	Cucurbita pepo (Zucchini)	carcpeB0388
Carg23310	Cucurbita pepo (Zucchini)	carcpeB0386
Carg23310	Wild cucumber (PI 183967)	carcpiB0307
Carg23310	Cucumber (Chinese Long) v2	carcuB0303
Carg23310	Cucumber (Chinese Long) v3	carcucB0306