Carg23294 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23294
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_188 : 23596 .. 25574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCTAGGTCTTCGATGGCCTATCTCGTGGCCACGATCTTGGTGGCGACTCTAAGTTTGCCATCGGTGTTTGCTGCTGATTATGTCTATTCGTCTCCGCCGCCTCCTTACTATTCATACAATTCACCTCCTCCTCCGATTTATCATTCTCCTCCGCCACCGAAAGTGAAGTATGAATATAAGTCACCACCACCTCCTGTTTACTATTCTCCTCCACCGCCTGTTTATCACTCTCCACCACCTCCGGTTTACCATTCCCCTCCACCTCCCGTTTACCATTCTCCTCCACCACCTGTGTATCACTCTCCACCGCCTCCGGTTTACCATTCTCCTCCACCACCTGTTTATCACTCTCCACCGCCTCCAGTTTACTATTCTCCTCCACCACCTAAGAAGGACTATGAATACAAATCTCCACCACCACCAAAGATGGATTACGAATACAAGTCTCCACCGCCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCGAAGAAGGACTATGAGTATAAATCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCTCCACCACCACGAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTACCCAAGAAGGACTACGAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAATCTCCTCCACCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCTAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCTAAGAAGGATTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAGTCTCCTCCACCTCCTAAGAAGGACTACGAATACAAGTCTCCACCACCACCCAAGAAGGATTACAAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAATACAAGTCTCCACCACCACCCAAGAAGGACTACGAGTATAAGTCTCCTCCACCACCCAAGAAGGATTACGAGTACATGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTATGAATACAAATCTCCGCCACCACCCAAGAAGGACTATGAATACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAATCTCCGCCACCACCGAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCGAAGAAGGACTACGAGTACAAATCTCCACCACCACCCAAGAAAGACTACGAGTACAAGTCTCCACCACCTCCCAAGAACGACTACATTTATGCCTCACCACCACCTCCATACCACTACTAG

mRNA sequence

ATGGGGAAATCTAGGTCTTCGATGGCCTATCTCGTGGCCACGATCTTGGTGGCGACTCTAAGTTTGCCATCGGTGTTTGCTGCTGATTATGTCTATTCGTCTCCGCCGCCTCCTTACTATTCATACAATTCACCTCCTCCTCCGATTTATCATTCTCCTCCGCCACCGAAAGTGAAGTATGAATATAAGTCACCACCACCTCCTGTTTACTATTCTCCTCCACCGCCTGTTTATCACTCTCCACCACCTCCGGTTTACCATTCCCCTCCACCTCCCGTTTACCATTCTCCTCCACCACCTGTGTATCACTCTCCACCGCCTCCGGTTTACCATTCTCCTCCACCACCTGTTTATCACTCTCCACCGCCTCCAGTTTACTATTCTCCTCCACCACCTAAGAAGGACTATGAATACAAATCTCCACCACCACCAAAGATGGATTACGAATACAAGTCTCCACCGCCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCGAAGAAGGACTATGAGTATAAATCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCTCCACCACCACGATCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTACCCAAGAAGGACTACGATCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAATCTCCTCCACCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCTAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCTAAGAAGGATTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAGTCTCCTCCACCTCCTAAGAAGGACTACGAATACAAGTCTCCACCACCACCCAAGAAGGATTACAAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAATACAAGTCTCCACCACCACCCAAGAAGGACTACGAGTATAAGTCTCCTCCACCACCCAAGAAGGATTACGAGTACATGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTATGAATACAAATCTCCGCCACCACCCAAGAAGGACTATGAATACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAATCTCCGCCACCACCGAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCGAAGAAGGACTACGAGTACAAATCTCCACCACCACCCAAGAAAGACTACGAGTACAAGTCTCCACCACCTCCCAAGAACGACTACATTTATGCCTCACCACCACCTCCATACCACTACTAG

Coding sequence (CDS)

ATGGGGAAATCTAGGTCTTCGATGGCCTATCTCGTGGCCACGATCTTGGTGGCGACTCTAAGTTTGCCATCGGTGTTTGCTGCTGATTATGTCTATTCGTCTCCGCCGCCTCCTTACTATTCATACAATTCACCTCCTCCTCCGATTTATCATTCTCCTCCGCCACCGAAAGTGAAGTATGAATATAAGTCACCACCACCTCCTGTTTACTATTCTCCTCCACCGCCTGTTTATCACTCTCCACCACCTCCGGTTTACCATTCCCCTCCACCTCCCGTTTACCATTCTCCTCCACCACCTGTGTATCACTCTCCACCGCCTCCGGTTTACCATTCTCCTCCACCACCTGTTTATCACTCTCCACCGCCTCCAGTTTACTATTCTCCTCCACCACCTAAGAAGGACTATGAATACAAATCTCCACCACCACCAAAGATGGATTACGAATACAAGTCTCCACCGCCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCGAAGAAGGACTATGAGTATAAATCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCTCCACCACCACGATCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTACCCAAGAAGGACTACGATCTCCTCCTCCACCCAAGAAGGATTATGAGTACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTATGAGTACAAGTCCCCTCCACCACCGAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCCCCACCTCCCAAGAAGGACTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAATCTCCTCCACCTCCTAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGATTACGAGTACAAGTCCCCTCCACCACCTAAGAAGGGCTACGAGTACAAGTCTCCCCCACCACCTAAGAAGGATTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAGTCTCCTCCACCTCCTAAGAAGGACTACGAATACAAGTCTCCACCACCACCCAAGAAGGATTACAAGTACAAGTCTCCTCCTCCACCCAAGAAGGATTACGAATACAAGTCTCCACCACCACCCAAGAAGGACTACGAGTATAAGTCTCCTCCACCACCCAAGAAGGATTACGAGTACATGTCCCCTCCACCACCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTATGAATACAAATCTCCGCCACCACCCAAGAAGGACTATGAATACAAGTCTCCACCACCTCCCAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCAAAGAAGGACTACGAGTACAAATCTCCGCCACCACCGAAGAAGGACTACGAGTACAAGTCTCCTCCACCACCGAAGAAGGACTACGAGTACAAATCTCCACCACCACCCAAGAAAGACTACGAGTACAAGTCTCCACCACCTCCCAAGAACGACTACATTTATGCCTCACCACCACCTCCATACCACTACTAG

Protein sequence

MGKSRSSMAYLVATILVATLSLPSVFAADYVYSSPPPPYYSYNSPPPPIYHSPPPPKVKYEYKSPPPPVYYSPPPPVYHSPPPPVYHSPPPPVYHSPPPPVYHSPPPPVYHSPPPPVYHSPPPPVYYSPPPPKKDYEYKSPPPPKMDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPRSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKGYEYKSPPPPKKDYEYKSPPPTQEGLRSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKGYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKGYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYKYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYMSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKKDYEYKSPPPPKNDYIYASPPPPYHY

Homology

[Close]

BLAST of Carg23294 vs. NCBI nr
Match: XP_022936362.1 (extensin-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-06
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYSS 35
          MGKSRSSMAYLVATILVATLS+PSVFAADYVYSS
Sbjct: 1  MGKSRSSMAYLVATILVATLSMPSVFAADYVYSS 34

[Close]

BLAST of Carg23294 vs. NCBI nr
Match: XP_023535223.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-06
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYS 34
          MGKSRSSMAYLVATILVATLSLPSVFAADYVYS
Sbjct: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYS 33

[Close]

BLAST of Carg23294 vs. NCBI nr
Match: XP_022936363.1 (extensin-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYS 34
          MGKSRSSMAYLVATILVATLS+PSVFAADYVYS
Sbjct: 1  MGKSRSSMAYLVATILVATLSMPSVFAADYVYS 33

[Close]

BLAST of Carg23294 vs. NCBI nr
Match: XP_022976064.1 (extensin-3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-05
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYSS 35
          MGKSRSSMAYL+AT+LVATLSLPSVFA DYVYSS
Sbjct: 1  MGKSRSSMAYLLATVLVATLSLPSVFAVDYVYSS 34

[Close]

BLAST of Carg23294 vs. NCBI nr
Match: XP_022976065.1 (extensin-3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-05
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1  MGKSRSSMAYLVATILVATLSLPSVFAADYVYSS 35
          MGKSRSSMAYL+AT+LVATLSLPSVFA DYVYSS
Sbjct: 1  MGKSRSSMAYLLATVLVATLSLPSVFAVDYVYSS 34

The following BLAST results are available for this feature:

BLAST of Carg23294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936362.1	5.1e-06	97.06	extensin-3-like isoform X1 [Cucurbita moschata]	[more]
XP_023535223.1	8.7e-06	100.00	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936363.1	1.5e-05	96.97	extensin-3-like isoform X2 [Cucurbita moschata]	[more]
XP_022976064.1	2.5e-05	91.18	extensin-3-like isoform X1 [Cucurbita maxima]	[more]
XP_022976065.1	2.5e-05	91.18	extensin-3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg23294 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23294 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23294 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009664	plant-type cell wall organization

Vocabulary: **Molecular Function**
Term	Definition
GO:0005199	structural constituent of cell wall

Vocabulary: **INTERPRO**
Term	Definition
IPR006706	Extensin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042546	cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005618	cell wall
molecular_function	GO:0005199	structural constituent of cell wall

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23294-RA	Carg23294-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006706	Extensin domain	PFAM	PF04554	Extensin_2	coord: 319..375 e-value: 3.6E-7 score: 30.1 coord: 269..315 e-value: 3.1E-7 score: 30.3 coord: 172..227 e-value: 2.5E-7 score: 30.6 coord: 391..447 e-value: 1.1E-6 score: 28.6 coord: 507..555 e-value: 4.6E-7 score: 29.7 coord: 555..603 e-value: 4.1E-7 score: 29.9 coord: 579..627 e-value: 4.6E-7 score: 29.7 coord: 93..144 e-value: 4.6E-5 score: 23.3 coord: 29..68 e-value: 2.3E-5 score: 24.3 coord: 228..269 e-value: 5.4E-5 score: 23.1 coord: 459..507 e-value: 4.2E-7 score: 29.9 coord: 411..459 e-value: 1.5E-6 score: 28.1 coord: 355..411 e-value: 7.8E-7 score: 29.0 coord: 523..579 e-value: 2.6E-6 score: 27.3 coord: 477..531 e-value: 6.2E-7 score: 29.3 coord: 427..495 e-value: 1.0E-6 score: 28.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..654
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..447
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 538..636
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 454..531
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..224

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23294	Cla015040	Watermelon (97103) v1	carwmB0266
Carg23294	Csa7G312940	Cucumber (Chinese Long) v2	carcuB0303
Carg23294	MELO3C024096	Melon (DHL92) v3.5.1	carmeB0276
Carg23294	ClCG09G009910	Watermelon (Charleston Gray)	carwcgB0267
Carg23294	CSPI07G12850	Wild cucumber (PI 183967)	carcpiB0307
Carg23294	CmaCh09G010970	Cucurbita maxima (Rimu)	carcmaB0382
Carg23294	CmoCh09G011070	Cucurbita moschata (Rifu)	carcmoB0380
Carg23294	Lsi02G020140	Bottle gourd (USVL1VR-Ls)	carlsiB248
Carg23294	Cp4.1LG06g07620	Cucurbita pepo (Zucchini)	carcpeB0388
Carg23294	CsGy7G011920	Cucumber (Gy14) v2	carcgybB0291
Carg23294	CsGy7G011770	Cucumber (Gy14) v2	carcgybB0290
Carg23294	MELO3C024096.2	Melon (DHL92) v3.6.1	carmedB0288
Carg23294	CsaV3_7G024770	Cucumber (Chinese Long) v3	carcucB0306
Carg23294	Cla97C09G172720	Watermelon (97103) v2	carwmbB0284
Carg23294	Bhi09G001246	Wax gourd	carwgoB0360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None