Carg23098 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23098
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cyclic phosphodiesterase-like
Location	Cucurbita_argyrosperma_scaffold_215 : 148754 .. 149565 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACCCCAATTCCGCCCCGATTGAACCCTGTGAAGGGGAGTTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTCGCCACCAAAATCATTTCTCTGATGAGCAGCCTGAGATCCGAGTTTGGCGGCCCCGAATTTGAGCCGCATATCACCGTGGTTGGGGCAAATCGTCTCACCCCACAGGATGCCCTCAATAAATTCCGATCGGCTTGCGAAGGGGTCAAGGCTTATCAAGCCACCGTGGATCAAGTTTCCATCGGAACGACCTTCTACCAGTGTGTTTTTCTCCTCATTCATCCCACCACCGAGGTGCTTCCCTCTCATCCTTCCGTCTGCATCTCATCGTTTGGGCTTTTGTTATGTTTAATTTTCCTCCTATTCTCTCTGTTTTCTTCTCAGGTGGTGCAGATCAGCTCACATTGCTGCGGCCATTTTGGTTACAACAACTCCACCCGTAAGTTCATTCACATTCAAAATCATGAATTGGCTCTGCTTTTCCCTTTCCTTGGGATTGTTATGAGCATACTGAAAGCTCTTAATAATGATACAAATGGCATTATCCCCCAAATGATCTAATCTAAACACTCCAAGTATATGTGTGTGTATCAGCTTACATGCCGCATTTGAGCCTACTATATGCGAACATATCAGATGAAATGAAGAAGCGGGCGAAGGAAATAGCGGACAAACTGAATGAAGCCGTGAACGGCCTGAAAGTGCCAGTCACTCGACTTGCATTGTACAAAACAGACACAGGCGATGAAACTCTCAAGTCGTGGGAGAAAATTGCAGAGCACGATCTTCCTTCA

mRNA sequence

ATGGCGAACCCCAATTCCGCCCCGATTGAACCCTGTGAAGGGGAGTTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTCGCCACCAAAATCATTTCTCTGATGAGCAGCCTGAGATCCGAGTTTGGCGGCCCCGAATTTGAGCCGCATATCACCGTGGTTGGGGCAAATCGTCTCACCCCACAGGATGCCCTCAATAAATTCCGATCGGCTTGCGAAGGGGTCAAGGCTTATCAAGCCACCGTGGATCAAGTTTCCATCGGAACGACCTTCTACCAGTGTGTTTTTCTCCTCATTCATCCCACCACCGAGGTGGTGCAGATCAGCTCACATTGCTGCGGCCATTTTGGTTACAACAACTCCACCCCTTACATGCCGCATTTGAGCCTACTATATGCGAACATATCAGATGAAATGAAGAAGCGGGCGAAGGAAATAGCGGACAAACTGAATGAAGCCGTGAACGGCCTGAAAGTGCCAGTCACTCGACTTGCATTGTACAAAACAGACACAGGCGATGAAACTCTCAAGTCGTGGGAGAAAATTGCAGAGCACGATCTTCCTTCA

Coding sequence (CDS)

ATGGCGAACCCCAATTCCGCCCCGATTGAACCCTGTGAAGGGGAGTTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTCGCCACCAAAATCATTTCTCTGATGAGCAGCCTGAGATCCGAGTTTGGCGGCCCCGAATTTGAGCCGCATATCACCGTGGTTGGGGCAAATCGTCTCACCCCACAGGATGCCCTCAATAAATTCCGATCGGCTTGCGAAGGGGTCAAGGCTTATCAAGCCACCGTGGATCAAGTTTCCATCGGAACGACCTTCTACCAGTGTGTTTTTCTCCTCATTCATCCCACCACCGAGGTGGTGCAGATCAGCTCACATTGCTGCGGCCATTTTGGTTACAACAACTCCACCCCTTACATGCCGCATTTGAGCCTACTATATGCGAACATATCAGATGAAATGAAGAAGCGGGCGAAGGAAATAGCGGACAAACTGAATGAAGCCGTGAACGGCCTGAAAGTGCCAGTCACTCGACTTGCATTGTACAAAACAGACACAGGCGATGAAACTCTCAAGTCGTGGGAGAAAATTGCAGAGCACGATCTTCCTTCA

Protein sequence

MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS

Homology

[Close]

BLAST of Carg23098 vs. NCBI nr
Match: XP_022926309.1 (cyclic phosphodiesterase-like [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 1.5e-104
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLT 60
           MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLT
Sbjct: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIRLT 60

Query: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNN 120
           PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNN
Sbjct: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNN 120

Query: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE 180
           STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE
Sbjct: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE 180

Query: 181 KIAEHDLPS 190
           KIAEHDLPS
Sbjct: 181 KIAEHDLPS 189

[Close]

BLAST of Carg23098 vs. NCBI nr
Match: XP_023003151.1 (cyclic phosphodiesterase-like [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 3.8e-103
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLT 60
           MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLT
Sbjct: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIRLT 60

Query: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNN 120
           PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFG NN
Sbjct: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGCNN 120

Query: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE 180
           STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVP+TRLALYKTDTGDETLKSWE
Sbjct: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPLTRLALYKTDTGDETLKSWE 180

Query: 181 KIAEHDLPS 190
           KIAEHDLPS
Sbjct: 181 KIAEHDLPS 189

[Close]

BLAST of Carg23098 vs. NCBI nr
Match: XP_023518208.1 (cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 4.2e-102
Identity = 184/189 (97.35%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLT 60
           MANP S PIEPCEGELYS+WALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLT
Sbjct: 1   MANPKSDPIEPCEGELYSLWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIRLT 60

Query: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNN 120
           PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCC HFGYNN
Sbjct: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCSHFGYNN 120

Query: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE 180
           STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE
Sbjct: 121 STPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWE 180

Query: 181 KIAEHDLPS 190
           KIAEHDLPS
Sbjct: 181 KIAEHDLPS 189

[Close]

BLAST of Carg23098 vs. NCBI nr
Match: XP_023518207.1 (cyclic phosphodiesterase-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 2.4e-97
Identity = 184/219 (84.02%), Postives = 185/219 (84.47%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLT 60
           MANP S PIEPCEGELYS+WALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGA RLT
Sbjct: 1   MANPKSDPIEPCEGELYSLWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIRLT 60

Query: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTE---------------- 120
           PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTE                
Sbjct: 61  PQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVLPSHPSVCISSFGLL 120

Query: 121 --------------VVQISSHCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKL 180
                         VVQISSHCC HFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKL
Sbjct: 121 LCLIFLLFSLFSSQVVQISSHCCSHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKL 180

Query: 181 NEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS 190
           NEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS
Sbjct: 181 NEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAEHDLPS 219

[Close]

BLAST of Carg23098 vs. NCBI nr
Match: XP_023543945.1 (cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 9.3e-86
Identity = 156/191 (81.68%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANR 60
           MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGA R
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGY 120
           LT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLLIHPTT+VV+ SSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKS 180
            NSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKS
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLPS 190
           WEKIAE DLPS
Sbjct: 181 WEKIAEQDLPS 191

[Close]

BLAST of Carg23098 vs. TAIR10
Match: AT4G18930.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-49
Identity = 91/175 (52.00%), Postives = 123/175 (70.29%), Query Frame = 0


Query: 9   IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKF 68
           +E  + ++YSVWALP E+   +   LM +LRSEF GP F PH+TV  +  LT  +A   F
Sbjct: 1   MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60

Query: 69  RSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYMPHL 128
            SAC+G+KAY ATVD+VS GT F+QCVFLL+  T EV++   HC  HF  + +TPYMPHL
Sbjct: 61  ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHL 120

Query: 129 SLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA 184
           SLLYA +++E KK A+E A  L+ +++GL   + RLAL KTDT D+TL++WE +A
Sbjct: 121 SLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Carg23098 vs. TAIR10
Match: AT4G18940.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-40
Identity = 81/199 (40.70%), Postives = 123/199 (61.81%), Query Frame = 0


Query: 1   MANPNSAPIEPC--------EGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHIT 60
           M   N+ P++P         E  +Y++WA+P +DV  ++  LM  LRSEFGGP F+PH+T
Sbjct: 1   MTEENATPLQPPQTQEDDEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLT 60

Query: 61  VVG--ANRLTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISS 120
           +VG    +LT  +A   F+SACEG K Y ATVDQVS GT+++QC+++ +  T EV+  + 
Sbjct: 61  LVGPFPYKLTASEAKRMFKSACEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAG 120

Query: 121 HCCGHFGYNNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTD 180
           H   HF       Y+PH+S+LY ++++  KK+A E A  L+ +++GL   + R+AL+ TD
Sbjct: 121 HFMAHFKPFTGKFYVPHMSILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITD 180

Query: 181 TGDETLKSWEKIAEHDLPS 190
                + SW K+ EH L S
Sbjct: 181 A---DVGSWVKVDEHTLIS 196

[Close]

BLAST of Carg23098 vs. Swiss-Prot
Match: sp|O04147|CPD_ARATH (Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.0e-48
Identity = 91/175 (52.00%), Postives = 123/175 (70.29%), Query Frame = 0


Query: 9   IEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDALNKF 68
           +E  + ++YSVWALP E+   +   LM +LRSEF GP F PH+TV  +  LT  +A   F
Sbjct: 1   MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60

Query: 69  RSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYMPHL 128
            SAC+G+KAY ATVD+VS GT F+QCVFLL+  T EV++   HC  HF  + +TPYMPHL
Sbjct: 61  ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHL 120

Query: 129 SLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIA 184
           SLLYA +++E KK A+E A  L+ +++GL   + RLAL KTDT D+TL++WE +A
Sbjct: 121 SLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Carg23098 vs. TrEMBL
Match: tr|A0A1S3AYZ1|A0A1S3AYZ1_CUCME (cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.3e-79
Identity = 147/191 (76.96%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANR 60
           M NP SA I+  E E  +YSVWALPPEDV+ +I +LM+SLRSEFGGP+FEPHITVVGA R
Sbjct: 1   MVNPESASIQSSEEETNVYSVWALPPEDVSARIENLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGY 120
           LT +DALNKF +AC+G+KAYQATVD VS GT FYQCVFLLIHPTTEVV+ SSH C HFG+
Sbjct: 61  LTAEDALNKFLTACQGIKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHFCKHFGF 120

Query: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKS 180
            NSTPYMPH+SLLYA+ISDE KK+AKEIADKL+EAVNGLK P+TRLAL+KTDT DETLKS
Sbjct: 121 KNSTPYMPHMSLLYAHISDEKKKQAKEIADKLDEAVNGLKFPITRLALWKTDTSDETLKS 180

Query: 181 WEKIAEHDLPS 190
           WEKI EHDL S
Sbjct: 181 WEKIVEHDLSS 191

[Close]

BLAST of Carg23098 vs. TrEMBL
Match: tr|A0A0A0KLS9|A0A0A0KLS9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520400 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 140/191 (73.30%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANR 60
           M NP SA I+  E E  +YSVWALPPEDV+ +I +LM SLRSEFGGP FEPHITVVGA R
Sbjct: 1   MMNPESASIQSDEEETHVYSVWALPPEDVSARIENLMKSLRSEFGGPLFEPHITVVGAIR 60

Query: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGY 120
           LT +DAL KFR+AC+G+KAYQATVD V+ GT FYQCVFLLIHPTTEVV+ SSH C HF +
Sbjct: 61  LTAEDALTKFRTACQGIKAYQATVDHVTTGTFFYQCVFLLIHPTTEVVETSSHFCKHFDF 120

Query: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKS 180
            +STPYMPH+SLLY++ISDE +K+AKEIADKL+EAVNGL+ P+TRLAL KTDT DETLKS
Sbjct: 121 KSSTPYMPHMSLLYSHISDEKRKQAKEIADKLDEAVNGLRFPITRLALCKTDTADETLKS 180

Query: 181 WEKIAEHDLPS 190
           W+KI EHDL S
Sbjct: 181 WDKIVEHDLSS 191

[Close]

BLAST of Carg23098 vs. TrEMBL
Match: tr|A0A2P4M2U0|A0A2P4M2U0_QUESU (Cyclic phosphodiesterase OS=Quercus suber OX=58331 GN=CFP56_78492 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.9e-67
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = 0


Query: 6   SAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDAL 65
           S  +EP E  +YSVWA+PP+DVA ++  LM SL SEFGGP+FEPHITVVGA  LTP+DA+
Sbjct: 4   SQQVEP-EKHVYSVWAVPPDDVAARLRKLMDSLGSEFGGPKFEPHITVVGAVSLTPEDAV 63

Query: 66  NKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYM 125
            KFRSACEG KAY ATVD+V+ GT FYQCVFLLIHPTTEVV+ S+HCCGHFGY NSTPYM
Sbjct: 64  EKFRSACEGRKAYTATVDRVATGTFFYQCVFLLIHPTTEVVETSAHCCGHFGYKNSTPYM 123

Query: 126 PHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAE 185
           PHLSLLYA+++++ KK+A+E A  L+E++N L   V RLALYKTDT D TLKSWEKI+E
Sbjct: 124 PHLSLLYADLTEDEKKKAQERASILDESINSLSFQVNRLALYKTDTEDTTLKSWEKISE 181

[Close]

BLAST of Carg23098 vs. TrEMBL
Match: tr|A0A2P4IYY8|A0A2P4IYY8_QUESU (Cyclic phosphodiesterase OS=Quercus suber OX=58331 GN=CFP56_78235 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.9e-66
Identity = 125/179 (69.83%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 6   SAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQDAL 65
           S  +EP E  +YSVWA+PP+DVA ++  LM SL SEFGGP+FEPHITVVGA  LTP+DA+
Sbjct: 4   SQQVEP-EKHVYSVWAVPPDDVAARLRKLMDSLGSEFGGPKFEPHITVVGAVSLTPEDAV 63

Query: 66  NKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNSTPYM 125
            KFRSACEG KAY ATVD+V+ GT FYQCVFLLIHPTTEVV+ S+HCCGHFGY NSTPYM
Sbjct: 64  EKFRSACEGRKAYTATVDRVATGTFFYQCVFLLIHPTTEVVETSAHCCGHFGYKNSTPYM 123

Query: 126 PHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKIAE 185
           PHLSLLYA+++++ KK+A+E A  L+E+ N L   V RLALYKTDT D TLKSWEKI+E
Sbjct: 124 PHLSLLYADLTEDEKKKAQERASILDESSNSLSFQVNRLALYKTDTEDTTLKSWEKISE 181

[Close]

BLAST of Carg23098 vs. TrEMBL
Match: tr|A0A2I4FEJ9|A0A2I4FEJ9_9ROSI (cyclic phosphodiesterase-like OS=Juglans regia OX=51240 GN=LOC108998077 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.1e-66
Identity = 120/185 (64.86%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 3   NPNSAPIEPCEGELYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGANRLTPQ 62
           +P +A +E  E  +YSVWA+PP+DVA ++  LM  LRSEFGGP+FEPHITVVGA  LTP 
Sbjct: 60  DPETAQVE--EKHVYSVWAVPPDDVAARLKKLMEDLRSEFGGPQFEPHITVVGAISLTPD 119

Query: 63  DALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGYNNST 122
           DA ++FRSAC+G+KAY ATVD+V+ GT FYQCV++LIHPTT+VV+ S+HC GHFGY +ST
Sbjct: 120 DAFSRFRSACDGLKAYTATVDRVATGTFFYQCVYVLIHPTTQVVETSAHCSGHFGYKSST 179

Query: 123 PYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKSWEKI 182
           PYMPHLSLLY +++D+ K RA+E A  L+E+++ L  PV+RLALYKTDT D+TLKSWEKI
Sbjct: 180 PYMPHLSLLYGDLTDDEKSRAQEKASILDESISSLSFPVSRLALYKTDTEDKTLKSWEKI 239

Query: 183 AEHDL 188
           AE+ L
Sbjct: 240 AEYSL 242

The following BLAST results are available for this feature:

BLAST of Carg23098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926309.1	1.5e-104	99.47	cyclic phosphodiesterase-like [Cucurbita moschata]	[more]
XP_023003151.1	3.8e-103	98.41	cyclic phosphodiesterase-like [Cucurbita maxima]	[more]
XP_023518208.1	4.2e-102	97.35	cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023518207.1	2.4e-97	84.02	cyclic phosphodiesterase-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023543945.1	9.3e-86	81.68	cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23098 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18930.1	5.0e-49	52.00	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT4G18940.1	4.2e-40	40.70	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

BLAST of Carg23098 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04147\|CPD_ARATH	9.0e-48	52.00	Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1	[more]

BLAST of Carg23098 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYZ1\|A0A1S3AYZ1_CUCME	3.3e-79	76.96	cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1	[more]
tr\|A0A0A0KLS9\|A0A0A0KLS9_CUCSA	1.1e-74	73.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520400 PE=4 SV=1	[more]
tr\|A0A2P4M2U0\|A0A2P4M2U0_QUESU	4.9e-67	69.83	Cyclic phosphodiesterase OS=Quercus suber OX=58331 GN=CFP56_78492 PE=4 SV=1	[more]
tr\|A0A2P4IYY8\|A0A2P4IYY8_QUESU	1.9e-66	69.83	Cyclic phosphodiesterase OS=Quercus suber OX=58331 GN=CFP56_78235 PE=4 SV=1	[more]
tr\|A0A2I4FEJ9\|A0A2I4FEJ9_9ROSI	4.1e-66	64.86	cyclic phosphodiesterase-like OS=Juglans regia OX=51240 GN=LOC108998077 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004112	cyclic-nucleotide phosphodiesterase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009097	cNuc_Pdiesterase
IPR012386	Cyclic-nucl_3Pdiesterase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004112	cyclic-nucleotide phosphodiesterase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23098-RA	Carg23098-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.1140.10		coord: 10..189 e-value: 3.5E-53 score: 181.8
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PIRSF	PIRSF017903	CPDase_plant	coord: 1..189 e-value: 3.9E-63 score: 210.6
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PFAM	PF07823	CPDase	coord: 18..180 e-value: 7.3E-12 score: 45.3
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PANTHER	PTHR28141	FAMILY NOT NAMED	coord: 15..187
IPR009097	Cyclic phosphodiesterase	SUPERFAMILY	SSF55144	LigT-like	coord: 16..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23098	Cla009723	Watermelon (97103) v1	carwmB0957
Carg23098	Csa6G520400	Cucumber (Chinese Long) v2	carcuB0972
Carg23098	MELO3C007183	Melon (DHL92) v3.5.1	carmeB0937
Carg23098	ClCG01G024060	Watermelon (Charleston Gray)	carwcgB0931
Carg23098	CSPI06G35730	Wild cucumber (PI 183967)	carcpiB0993
Carg23098	Cucsa.047260	Cucumber (Gy14) v1	carcgyB1075
Carg23098	CmaCh03G013530	Cucurbita maxima (Rimu)	carcmaB1311
Carg23098	CmoCh07G001500	Cucurbita moschata (Rifu)	carcmoB1281
Carg23098	CmoCh03G013490	Cucurbita moschata (Rifu)	carcmoB1280
Carg23098	Lsi01G002070	Bottle gourd (USVL1VR-Ls)	carlsiB871
Carg23098	Cp4.1LG19g06590	Cucurbita pepo (Zucchini)	carcpeB1326
Carg23098	Cp4.1LG10g05600	Cucurbita pepo (Zucchini)	carcpeB1325
Carg23098	MELO3C007183.2	Melon (DHL92) v3.6.1	carmedB0943
Carg23098	CsaV3_6G051200	Cucumber (Chinese Long) v3	carcucB0999
Carg23098	Cla97C01G023990	Watermelon (97103) v2	carwmbB1005
Carg23098	Bhi03G000008	Wax gourd	carwgoB1108

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23098	Carg15370	Silver-seed gourd	carcarB510

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23098	Cucumber (Gy14) v1	carcgyB1076
Carg23098	Silver-seed gourd	carcarB623
Carg23098	Cucumber (Gy14) v2	carcgybB0943
Carg23098	Cucumber (Gy14) v2	carcgybB0944
Carg23098	Cucurbita maxima (Rimu)	carcmaB1310
Carg23098	Cucurbita maxima (Rimu)	carcmaB1312
Carg23098	Cucurbita moschata (Rifu)	carcmoB1279
Carg23098	Cucurbita pepo (Zucchini)	carcpeB1324
Carg23098	Cucurbita pepo (Zucchini)	carcpeB1327
Carg23098	Wild cucumber (PI 183967)	carcpiB0992
Carg23098	Cucumber (Chinese Long) v2	carcuB0971
Carg23098	Cucumber (Chinese Long) v3	carcucB0998
Carg23098	Bottle gourd (USVL1VR-Ls)	carlsiB872
Carg23098	Melon (DHL92) v3.5.1	carmeB0936
Carg23098	Melon (DHL92) v3.6.1	carmedB0942
Carg23098	Watermelon (Charleston Gray)	carwcgB0932
Carg23098	Watermelon (97103) v1	carwmB0956
Carg23098	Watermelon (97103) v2	carwmbB1006
Carg23098	Wax gourd	carwgoB1109