Carg22980 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22980
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L17
Location	Cucurbita_argyrosperma_scaffold_319 : 246733 .. 250079 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACGTGGTCTTTGGCAGAACAATTAAGTTTTTGCTTTCTTTAAAACGGTTGTTTGGCCCATCCGAAACGAAACCGGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCTTTCTTTCCGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGGTTGCTCACTCCTTTCAGCAACTATCAATTAAGTTTTATGTCCCAATTTTTGAACGTCTGTTCTCTTCTTTTGGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTACAAAGGTATCCCTATTGACTTTCTTCTTATCATTTATTGGAATCTCGATGTTTAACTTTTCTGAATTTTGCTTTTCCAAGTGATGCATTAGCTTCATGTTCACCCGAACCCCCCTTCGGTTTCGTTGTTAGATTATTTTATCTGAAGTTAATCGTAGGTTTGTTGCATTGTAAATGGAATTATCGGGTGGTTGAAAATTTTGACGTCTTGTATTGTCTGAACTGAGCTTAGGTTTTGTTTTTTCTTAGAATCTGAATTTGGTTAGTTACATATTTGTCATCTCTTTCCCCTTGGGTTGCATCTTTTCTGTTCCTTCAAATTTTAACCCCGAGCTTACTGTTGAAGGATATATTTCATTCCTTGAGATCAAGTATAGATTTTTTTTTATTTTTTTATTTAGAACATCAACACTTATGAATTTATGACCATATTTTCAACTTATTTCTGCATTTGTCTTTCAACCTGTTTGCAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAGAGGTCCGTAGAAACTTAACTTTTGTTTTTCCCTTCTCAATGTTTTATTTATTTTTTTTCTTCTTTTCCCCTCACTGGGGAGGGTGTGTTCTGCCTCCAAATTTTGATATAGGTTGTATGCTAAGAAGCCACAGACAGTTTAGTCTGGCTCACATGTTCATGTTTGACAGACACTCCAACACTTATTGGACACTCGGGTAACACTAGATTTGTATTAGATACTAGTTGTAGAAAGCCAATATTAATCCAATATTTGTAAACTTCTTTAGCATACTAAATAGACAAATAATACTATAGGGAAAAATATAATTTTTAGTGTAAAATTACATCAAATTCATTGTATATAAATCCATTAAACTTGTTGAATTTAAAGTTTTCATACTGTATAAAAAGGATGTATATTTAAAAAAAAAAAATGAATGCAAATTTTAACAAATGTGTCCTTACTGTGTGTGTCTGTGTGTCCTAGATTTGTAAAAAATGACATGTCATTGTGTTTGAAGCCGTATCCTTATCCATGCTTCATAGGTTGGATTCTTTATCAATTAGATTATATATGAATTATATTTCAATTATTAGATGAGGGCTATTTGGTAAAAGGATAAATGCAAATGCCATGGTTCAAGATTTAGCTGATCTAAATGAGATGAGTATGATGTAATAATTCGAGGGAGAGAAACAAGACAAGGCTCGGAGGTCAAGTTTTGTGCAATTCAATTCTAATGCAGGAAGCAGAGATGGTATTGGGCATGGGCTTGATAAATATGTTTTGCCGGTAACGGAGGAAAATTGGATTTGGTCTGCAACCAACATTGGAAAGCTAAGCCAAATAAAGAAAGAGGCACCCTCCAATTAATGAGTTAGACCACTAAAATTTGGGCCCAGGATGATGCCTTTATTTCAAATCATTCTTATTTCAGTATTAGTAATCCTCAAAAGATGGAAACCATAAATTAATTACGGGATATCAATATGGAGAAAGAAAGACCTTCGGAAGGAAGATTTGTTGTAACTATTTGAAAGTGAAGAGGAAGCCGTGGTTTGAAGTTTGTTGGATGTTGTTGAAATTAAAGTAGCAAAGCAGTTCCAGAGACATCATATAATGTTTGATTTTAAAATGTAATGACTCTGCGTTACATAAAGGTGTATATAGTTGGGTTGTCTTCTGCTTACTCTTATTTGCACCAAGGACACTGTCATTTACTTCAGACTCTAACTTGCTGTGATCGAGAAGAAAACCAATGAAATCAACCACAAACAGAGTTCTTGTAAAGGAATTATTAAATTATCTTTGAAGTTGATTAAACTGTCTTTGCTTCAAAGATAGTTTAATAATTATTTTACACCTTGAATTGCGTGCAAAGACACTCTTCCTGTGTTTTGTTCTCGAAAGGGTGCACTCTCTATAGGAGGCTTGAGAAGGGTTTGGATCTTCTGTTTGAGACTGCCAGTTTGCTCTTCATATTCGGAGTTGATGGCTTAGAGATTGATGGTAGAGCCCAGATTGGGGGTGTTTTTGCGCTCTCCTTTCAAGGAGCATGGTAGAGTTTTGTGGTAGGCCAATTTCTTTGTGTTTTGTGGGGATATCTGGTTTGGGAGGAATGATAGATTTTTAGAAAGGTCAAGAGATCAATTGATGATGTTGGTTAAGTGACTAGATTTAATGCCTCTTTCTGGACATCAATAACTAAATCTTTTTATAATTATGAGCTTTGTCTTGTTCTTGGGACTGTCCTTTTTTGTAGTTAGAGGCGTACTCTATTTTTTGTGTGTGTGTTAGGGCGGGTGTTTTATGTATGTCCTTGTATATTCTTTCATTTTTCTTAATGAAAGCATTGTTTATTATAAGAAAATCTTTATTTCACTATTTTCATTTTATTCATAAAAGATAAACATGTTGTGACTTTTTTCCCCCCCAATCTAGGGTTCCCTTTGTGCTGCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAGTCCCAAATTTGTTAACCCGTAGTTCATGCTTTTATTTATAAGTATTAAATTGGACGGATGTTATGTTCAACAGAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAGTAAGTGCTTACCATCGACAGCTGCTATGTTTCTTCAGTTATACAGCTGTATTAAATAATCGATAGATGATGTACGAAACGGTTATAAATAAATACTGCTGGTACAGTTTTTAATTGATTATTTGTGCTGTTGATACAAATTTATTGAAAGTTGAATCAATGTATGAATTCATAATTTCTCTATGCTATCGATACAGATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

mRNA sequence

AATACGTGGTCTTTGGCAGAACAATTAAGTTTTTGCTTTCTTTAAAACGGTTGTTTGGCCCATCCGAAACGAAACCGGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCTTTCTTTCCGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTACAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAGAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Coding sequence (CDS)

ATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCACCGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTACAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAGAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Protein sequence

MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

Homology

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BLAST of Carg22980 vs. NCBI nr
Match: XP_023533917.1 (uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 5.9e-75
Identity = 150/159 (94.34%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGRDAAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       
Sbjct: 1   MTKFRKLGRDAAHRMSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

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BLAST of Carg22980 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 2.9e-74
Identity = 149/159 (93.71%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR AAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

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BLAST of Carg22980 vs. NCBI nr
Match: XP_022947437.1 (uncharacterized protein LOC111451296 [Cucurbita moschata])

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-73
Identity = 147/157 (93.63%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGRDAAHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       
Sbjct: 1   MTKFRKLGRDAAHRMSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS 151
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDT 157

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BLAST of Carg22980 vs. NCBI nr
Match: XP_022949983.1 (uncharacterized protein LOC111453209 [Cucurbita moschata])

HSP 1 Score: 284.3 bits (726), Expect = 2.5e-73
Identity = 149/159 (93.71%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGRDAA RVSMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       
Sbjct: 1   MTKFRKLGRDAAERVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKYRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

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BLAST of Carg22980 vs. NCBI nr
Match: XP_022132421.1 (uncharacterized protein LOC111005280 [Momordica charantia])

HSP 1 Score: 276.6 bits (706), Expect = 5.2e-71
Identity = 143/159 (89.94%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR   HR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGK       
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPPNPQP QKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

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BLAST of Carg22980 vs. TAIR10
Match: AT5G09770.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 253.4 bits (646), Expect = 8.6e-68
Identity = 131/160 (81.88%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR A HR+SMLRTMVSQLVKHERIETTVTKAKE+RRLADNM+Q GK       
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA FVRGDDVLHK+FTELA+RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI 153
           QSKP  PQPPQ+ P+DPW RSRL++QFAPPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

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BLAST of Carg22980 vs. TAIR10
Match: AT5G64650.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 248.8 bits (634), Expect = 2.1e-66
Identity = 127/160 (79.38%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR A HR+SMLRTMVSQLV+HERIETTVTKAKE+RRLADNM+Q GK       
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI 153
           QSKP  PQPP + P+DPW RSRL++Q+APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

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BLAST of Carg22980 vs. TAIR10
Match: AT3G54210.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-17
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 6   KLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAAA 65
           KL R    R ++LR + +QL+KH RI+TT  +A  +R+  D M+   K       R A  
Sbjct: 104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query: 66  FVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 107
           ++    ++H LF E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

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BLAST of Carg22980 vs. Swiss-Prot
Match: sp|A0L5Z9|RL17_MAGMM (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 5   RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAA 64
           R+L RD +HR +M++ M+  L KHERIETTV +AKE+R +A+ ++  GK       R A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRE 110
           + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD APM++IE ++R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

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BLAST of Carg22980 vs. Swiss-Prot
Match: sp|Q8RE45|RL17_FUSNN (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) OX=190304 GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 4   FRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHA 63
           +RKLGR A HR +ML+ M   L+K ERIETTVT+AKE+R+ A+ M+ FGK       R+A
Sbjct: 7   YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNA 66

Query: 64  AAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 107
            AF+R ++V+ K+F E+A +Y +R GGYTR+++T +R GD+A MA IE +
Sbjct: 67  FAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIELV 116

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BLAST of Carg22980 vs. Swiss-Prot
Match: sp|B3E858|RL17_GEOLS (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 5   RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAA 64
           R+LGR  +HR++M R MV+ L+ HERI TT  KAKEIR +A+ M+  GK       R AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFID 108
           A++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDAA ++ IE ++
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVE 117

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BLAST of Carg22980 vs. Swiss-Prot
Match: sp|A1ALW8|RL17_PELPD (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rplQ PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-23
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 5   RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKRH-------AA 64
           R+LGR  +HR +M R MV+ L  HE+I TT  KAKEIR +A+ M+  GKR        AA
Sbjct: 8   RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAA 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRE 110
           AF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDAAPM+ IE ++ E
Sbjct: 68  AFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIELVEEE 119

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BLAST of Carg22980 vs. Swiss-Prot
Match: sp|Q749B4|RL17_GEOSL (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rplQ PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-23
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 5   RKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK-------RHAA 64
           R+LGR  +HR++M R MV+ L  HERI TT  KAKE+R +A+ M+  GK       R AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKP 124
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE ++ + E +  K 
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 125 PNPQPPQKAPMDPWTRSRLSKQFAPPKE 146
               P Q     P          A P+E
Sbjct: 128 KPTAPAQAVATKPAVEETREAAAAQPQE 155

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BLAST of Carg22980 vs. TrEMBL
Match: tr|A0A151T5E2|A0A151T5E2_CAJCA (50S ribosomal protein L17 OS=Cajanus cajan OX=3821 GN=KK1_016796 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-68
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR  AHR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQ GK       
Sbjct: 1   MTKFRKLGRPTAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA+FVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPP PQPPQ+AP+DPWTRSRLS+QFAPPKE KS S++
Sbjct: 121 QSKPPTPQPPQRAPLDPWTRSRLSRQFAPPKEEKSGSDL 159

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BLAST of Carg22980 vs. TrEMBL
Match: tr|A0A2N9GBE6|A0A2N9GBE6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.4e-67
Identity = 136/159 (85.53%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKL R   HR+SM RTMVSQLVKHERIETTV KAKEIRRLADNMVQ GK       
Sbjct: 1   MTKFRKLNRPTGHRMSMFRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGDDV+HKLFTELAYRYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPP PQPPQKAP+DPWTRSRLSKQFAPPKE +S+SEI
Sbjct: 121 QSKPPTPQPPQKAPLDPWTRSRLSKQFAPPKEDRSESEI 159

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BLAST of Carg22980 vs. TrEMBL
Match: tr|A0A2P4HH64|A0A2P4HH64_QUESU (50s ribosomal protein l17 OS=Quercus suber OX=58331 GN=CFP56_67905 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.3e-67
Identity = 136/159 (85.53%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKL R   HR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQ GK       
Sbjct: 1   MTKFRKLNRPTGHRISMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGDDV+HKLFTELAYRYKDR GGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRTGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           QSKPP PQPPQKAP+DPWTRSRL KQFAPPKE KS+ EI
Sbjct: 121 QSKPPTPQPPQKAPLDPWTRSRLQKQFAPPKEEKSEPEI 159

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BLAST of Carg22980 vs. TrEMBL
Match: tr|A0A0L9UF32|A0A0L9UF32_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g137000 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66
Identity = 134/159 (84.28%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGKR------ 60
           MTKFRKLGR   HR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQ GK       
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAA 60

Query: 61  -HAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
             AA+FVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  SRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           Q+KPP PQPPQ+AP+DPWTRSRLS+QFAPPKE KS S++
Sbjct: 121 QAKPPTPQPPQRAPLDPWTRSRLSRQFAPPKEEKSGSDL 159

[Close]

BLAST of Carg22980 vs. TrEMBL
Match: tr|A0A0L9UZF2|A0A0L9UZF2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g186700 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66
Identity = 134/159 (84.28%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MTKFRKLGRDAAHRVSMLRTMVSQLVKHERIETTVTKAKEIRRLADNMVQFGK------- 60
           MTKFRKLGR   HR+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQ GK       
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA+FVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 153
           Q+KPP PQPPQ+AP+DPWTRS LS+QFAPPKE KS S++
Sbjct: 121 QAKPPTPQPPQRAPLDPWTRSHLSRQFAPPKEEKSGSDL 159

The following BLAST results are available for this feature:

BLAST of Carg22980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533917.1	5.9e-75	94.34	uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]	[more]
XP_022979157.1	2.9e-74	93.71	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]
XP_022947437.1	1.9e-73	93.63	uncharacterized protein LOC111451296 [Cucurbita moschata]	[more]
XP_022949983.1	2.5e-73	93.71	uncharacterized protein LOC111453209 [Cucurbita moschata]	[more]
XP_022132421.1	5.2e-71	89.94	uncharacterized protein LOC111005280 [Momordica charantia]	[more]

BLAST of Carg22980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09770.1	8.6e-68	81.88	Ribosomal protein L17 family protein	[more]
AT5G64650.1	2.1e-66	79.38	Ribosomal protein L17 family protein	[more]
AT3G54210.1	2.4e-17	41.67	Ribosomal protein L17 family protein	[more]

BLAST of Carg22980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A0L5Z9\|RL17_MAGMM	1.7e-25	51.33	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
sp\|Q8RE45\|RL17_FUSNN	2.5e-24	50.91	50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]
sp\|B3E858\|RL17_GEOLS	4.7e-23	50.00	50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278...	[more]
sp\|A1ALW8\|RL17_PELPD	4.7e-23	50.89	50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 1038...	[more]
sp\|Q749B4\|RL17_GEOSL	6.1e-23	40.54	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]

BLAST of Carg22980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A151T5E2\|A0A151T5E2_CAJCA	4.7e-68	86.16	50S ribosomal protein L17 OS=Cajanus cajan OX=3821 GN=KK1_016796 PE=3 SV=1	[more]
tr\|A0A2N9GBE6\|A0A2N9GBE6_FAGSY	1.4e-67	85.53	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1	[more]
tr\|A0A2P4HH64\|A0A2P4HH64_QUESU	2.3e-67	85.53	50s ribosomal protein l17 OS=Quercus suber OX=58331 GN=CFP56_67905 PE=3 SV=1	[more]
tr\|A0A0L9UF32\|A0A0L9UF32_PHAAN	1.1e-66	84.28	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g137000 PE...	[more]
tr\|A0A0L9UZF2\|A0A0L9UZF2_PHAAN	1.1e-66	84.28	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g186700 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000456	Ribosomal_L17
IPR036373	Ribosomal_L17_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22980-RA	Carg22980-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036373	Ribosomal protein L17 superfamily	GENE3D	G3DSA:3.90.1030.10		coord: 1..106 e-value: 2.0E-36 score: 126.8
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	SSF64263	Prokaryotic ribosomal protein L17	coord: 3..109
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 4..107 e-value: 8.3E-35 score: 117.5
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 17..106 e-value: 9.0E-29 score: 100.1
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 3..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..152
None	No IPR available	PANTHER	PTHR14413:SF16	39S RIBOSOMAL PROTEIN L17, MITOCHONDRIAL	coord: 3..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22980	Cp4.1LG05g12270	Cucurbita pepo (Zucchini)	carcpeB1243

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22980	Wax gourd	carwgoB1036
Carg22980	Wax gourd	carwgoB1037
Carg22980	Silver-seed gourd	carcarB619
Carg22980	Cucumber (Gy14) v2	carcgybB0879
Carg22980	Cucumber (Gy14) v1	carcgyB1011
Carg22980	Cucurbita maxima (Rimu)	carcmaB1232
Carg22980	Cucurbita maxima (Rimu)	carcmaB1233
Carg22980	Cucurbita moschata (Rifu)	carcmoB1204
Carg22980	Cucurbita pepo (Zucchini)	carcpeB1241
Carg22980	Wild cucumber (PI 183967)	carcpiB0926
Carg22980	Wild cucumber (PI 183967)	carcpiB0927
Carg22980	Cucumber (Chinese Long) v2	carcuB0906
Carg22980	Cucumber (Chinese Long) v2	carcuB0907
Carg22980	Cucumber (Chinese Long) v3	carcucB0929
Carg22980	Cucumber (Chinese Long) v3	carcucB0930
Carg22980	Bottle gourd (USVL1VR-Ls)	carlsiB810
Carg22980	Bottle gourd (USVL1VR-Ls)	carlsiB808
Carg22980	Melon (DHL92) v3.5.1	carmeB0877
Carg22980	Melon (DHL92) v3.5.1	carmeB0881
Carg22980	Melon (DHL92) v3.6.1	carmedB0885
Carg22980	Melon (DHL92) v3.6.1	carmedB0889
Carg22980	Watermelon (Charleston Gray)	carwcgB0865
Carg22980	Watermelon (Charleston Gray)	carwcgB0867
Carg22980	Watermelon (Charleston Gray)	carwcgB0868
Carg22980	Watermelon (97103) v1	carwmB0893
Carg22980	Watermelon (97103) v1	carwmB0894
Carg22980	Watermelon (97103) v1	carwmB0895
Carg22980	Watermelon (97103) v2	carwmbB0930
Carg22980	Watermelon (97103) v2	carwmbB0931