Carg22978 (gene) Silver-seed gourd

Overview
NameCarg22978
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger CCCH domain-containing protein 38 isoform X3
LocationCucurbita_argyrosperma_scaffold_319 : 242748 .. 243395 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAAAAGAACAAACTGCTAGTGAAGAGCCAAGATATACATGGCCTTCAGATAAAAAATGTGATCATGGTTTGAATAATGAGAGCAAAACTCGGTGGGATCGAGCTGTTGATACCAAGACAGTGCGAAGCAACAAGAACGATGCCATTCCGAGCAAGGCAGAGAATGCTGGTGGTTGCACAGGCAGTTCTGACCCTAGAGGTCACAGAAAGTGGCCAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTAGTGAAAGGCGATTGCAACGTTATGCAAGATTCTGGCTCTCAAACTTCCACGGCTTTAGCCATTAGCCATGCGATAGTTCAAGAGGCTCTGGCTAAGAATCAAGACATTGCCATAGAGCCCATAGTAGTTGATATTACTCGTTTTCAGAAAAACCAAACTTTAACGAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGGCAATCCTTCGGGTAACGTTGTCCTTGGACAAAGAATGGCATATCACAGTGACCATCCCGACGGAACTGTAACGAATCCGAAAAGTTTCAGATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGA

mRNA sequence

ATGGACAAAAAAGAACAAACTGCTAGTGAAGAGCCAAGATATACATGGCCTTCAGATAAAAAATGTGATCATGGTTTGAATAATGAGAGCAAAACTCGGTGGGATCGAGCTGTTGATACCAAGACAGTGCGAAGCAACAAGAACGATGCCATTCCGAGCAAGGCAGAGAATGCTGGTGGTTGCACAGGCAGTTCTGACCCTAGAGGTCACAGAAAGTGGCCAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTAGTGAAAGGCGATTGCAACGTTATGCAAGATTCTGGCTCTCAAACTTCCACGGCTTTAGCCATTAGCCATGCGATAGTTCAAGAGGCTCTGGCTAAGAATCAAGACATTGCCATAGAGCCCATAGTAGTTGATATTACTCGTTTTCAGAAAAACCAAACTTTAACGAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGGCAATCCTTCGGGTAACGTTGTCCTTGGACAAAGAATGGCATATCACAGTGACCATCCCGACGGAACTGTAACGAATCCGAAAAGTTTCAGATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGA

Coding sequence (CDS)

ATGGACAAAAAAGAACAAACTGCTAGTGAAGAGCCAAGATATACATGGCCTTCAGATAAAAAATGTGATCATGGTTTGAATAATGAGAGCAAAACTCGGTGGGATCGAGCTGTTGATACCAAGACAGTGCGAAGCAACAAGAACGATGCCATTCCGAGCAAGGCAGAGAATGCTGGTGGTTGCACAGGCAGTTCTGACCCTAGAGGTCACAGAAAGTGGCCAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTAGTGAAAGGCGATTGCAACGTTATGCAAGATTCTGGCTCTCAAACTTCCACGGCTTTAGCCATTAGCCATGCGATAGTTCAAGAGGCTCTGGCTAAGAATCAAGACATTGCCATAGAGCCCATAGTAGTTGATATTACTCGTTTTCAGAAAAACCAAACTTTAACGAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGGCAATCCTTCGGGTAACGTTGTCCTTGGACAAAGAATGGCATATCACAGTGACCATCCCGACGGAACTGTAACGAATCCGAAAAGTTTCAGATGGAAATTTCAGAGTCAAACTGCAGAAGGAGGATGA

Protein sequence

MDKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQRMAYHSDHPDGTVTNPKSFRWKFQSQTAEGG
Homology
[Close]
BLAST of Carg22978 vs. NCBI nr
Match: XP_022949980.1 (zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.4e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGC
Sbjct: 371 DKKEQTASEEPRYTWPSDQKCDHGLNNESKTRWDRAVDIKTVRSNKNDAIPSKAENAGGC 430

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 121
           TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ
Sbjct: 431 TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 490

Query: 122 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVV 181
           EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 
Sbjct: 491 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVG 550

Query: 182 LGQRMAYHSDHPDGTVTNPK----SFRWKFQSQ 211
           LGQRMAYHSDHPDGTVTNPK    +FR K Q +
Sbjct: 551 LGQRMAYHSDHPDGTVTNPKISDGNFRVKLQKK 583

[Close]
BLAST of Carg22978 vs. NCBI nr
Match: XP_022949975.1 (zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949976.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949977.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949978.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.4e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGC
Sbjct: 371 DKKEQTASEEPRYTWPSDQKCDHGLNNESKTRWDRAVDIKTVRSNKNDAIPSKAENAGGC 430

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 121
           TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ
Sbjct: 431 TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 490

Query: 122 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVV 181
           EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 
Sbjct: 491 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVG 550

Query: 182 LGQRMAYHSDHPDGTVTNPK----SFRWKFQSQ 211
           LGQRMAYHSDHPDGTVTNPK    +FR K Q +
Sbjct: 551 LGQRMAYHSDHPDGTVTNPKISDGNFRVKLQKK 583

[Close]
BLAST of Carg22978 vs. NCBI nr
Match: XP_022949981.1 (zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.4e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGC
Sbjct: 251 DKKEQTASEEPRYTWPSDQKCDHGLNNESKTRWDRAVDIKTVRSNKNDAIPSKAENAGGC 310

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 121
           TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ
Sbjct: 311 TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 370

Query: 122 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVV 181
           EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 
Sbjct: 371 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVG 430

Query: 182 LGQRMAYHSDHPDGTVTNPK----SFRWKFQSQ 211
           LGQRMAYHSDHPDGTVTNPK    +FR K Q +
Sbjct: 431 LGQRMAYHSDHPDGTVTNPKISDGNFRVKLQKK 463

[Close]
BLAST of Carg22978 vs. NCBI nr
Match: XP_022949979.1 (zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.4e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGC
Sbjct: 368 DKKEQTASEEPRYTWPSDQKCDHGLNNESKTRWDRAVDIKTVRSNKNDAIPSKAENAGGC 427

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 121
           TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ
Sbjct: 428 TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 487

Query: 122 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVV 181
           EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 
Sbjct: 488 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVG 547

Query: 182 LGQRMAYHSDHPDGTVTNPK----SFRWKFQSQ 211
           LGQRMAYHSDHPDGTVTNPK    +FR K Q +
Sbjct: 548 LGQRMAYHSDHPDGTVTNPKISDGNFRVKLQKK 580

[Close]
BLAST of Carg22978 vs. NCBI nr
Match: XP_022949982.1 (zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.4e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DKKEQTASEEPRYTWPSD+KCDHGLNNESKTRWDRAVD KTVRSNKNDAIPSKAENAGGC
Sbjct: 227 DKKEQTASEEPRYTWPSDQKCDHGLNNESKTRWDRAVDIKTVRSNKNDAIPSKAENAGGC 286

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 121
           TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ
Sbjct: 287 TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALAISHAIVQ 346

Query: 122 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVV 181
           EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 
Sbjct: 347 EALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVG 406

Query: 182 LGQRMAYHSDHPDGTVTNPK----SFRWKFQSQ 211
           LGQRMAYHSDHPDGTVTNPK    +FR K Q +
Sbjct: 407 LGQRMAYHSDHPDGTVTNPKISDGNFRVKLQKK 439

[Close]
BLAST of Carg22978 vs. TrEMBL
Match: tr|A0A1S3B2H8|A0A1S3B2H8_CUCME (zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.8e-79
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DK EQ AS+EP YTW S++K  HGLNNESKT+WD+ V  K V++NKND I SKAE+AGGC
Sbjct: 369 DKGEQIASQEPSYTWASEQKWVHGLNNESKTQWDQTVGIKAVQNNKNDTILSKAEDAGGC 428

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALA-ISHAIV 121
            G+SDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN++ DSGS+TS ALA +SHAIV
Sbjct: 429 IGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNIVPDSGSKTSIALATLSHAIV 488

Query: 122 QEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 181
           QEALAK QDIAIEPI  D T F++N  LTKD T ASA ND ITID+T ASHAEGNPS N 
Sbjct: 489 QEALAKKQDIAIEPITADNTHFRQNHNLTKDVTSASAFNDKITIDKTIASHAEGNPSSNT 548

Query: 182 VLGQRMAYHSDHPDGTVTNPK----SFRWKFQ 209
           VLGQRMAYH+DHP GTV NPK    +FR K Q
Sbjct: 549 VLGQRMAYHTDHPGGTVLNPKVSDGNFRVKQQ 580

[Close]
BLAST of Carg22978 vs. TrEMBL
Match: tr|A0A1S3B223|A0A1S3B223_CUCME (zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.8e-79
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DK EQ AS+EP YTW S++K  HGLNNESKT+WD+ V  K V++NKND I SKAE+AGGC
Sbjct: 366 DKGEQIASQEPSYTWASEQKWVHGLNNESKTQWDQTVGIKAVQNNKNDTILSKAEDAGGC 425

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALA-ISHAIV 121
            G+SDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN++ DSGS+TS ALA +SHAIV
Sbjct: 426 IGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNIVPDSGSKTSIALATLSHAIV 485

Query: 122 QEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 181
           QEALAK QDIAIEPI  D T F++N  LTKD T ASA ND ITID+T ASHAEGNPS N 
Sbjct: 486 QEALAKKQDIAIEPITADNTHFRQNHNLTKDVTSASAFNDKITIDKTIASHAEGNPSSNT 545

Query: 182 VLGQRMAYHSDHPDGTVTNPK----SFRWKFQ 209
           VLGQRMAYH+DHP GTV NPK    +FR K Q
Sbjct: 546 VLGQRMAYHTDHPGGTVLNPKVSDGNFRVKQQ 577

[Close]
BLAST of Carg22978 vs. TrEMBL
Match: tr|A0A1S3B2J7|A0A1S3B2J7_CUCME (zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.8e-79
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DK EQ AS+EP YTW S++K  HGLNNESKT+WD+ V  K V++NKND I SKAE+AGGC
Sbjct: 232 DKGEQIASQEPSYTWASEQKWVHGLNNESKTQWDQTVGIKAVQNNKNDTILSKAEDAGGC 291

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALA-ISHAIV 121
            G+SDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCN++ DSGS+TS ALA +SHAIV
Sbjct: 292 IGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNIVPDSGSKTSIALATLSHAIV 351

Query: 122 QEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 181
           QEALAK QDIAIEPI  D T F++N  LTKD T ASA ND ITID+T ASHAEGNPS N 
Sbjct: 352 QEALAKKQDIAIEPITADNTHFRQNHNLTKDVTSASAFNDKITIDKTIASHAEGNPSSNT 411

Query: 182 VLGQRMAYHSDHPDGTVTNPK----SFRWKFQ 209
           VLGQRMAYH+DHP GTV NPK    +FR K Q
Sbjct: 412 VLGQRMAYHTDHPGGTVLNPKVSDGNFRVKQQ 443

[Close]
BLAST of Carg22978 vs. TrEMBL
Match: tr|A0A0A0KF74|A0A0A0KF74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483460 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.5e-77
Identity = 151/213 (70.89%), Postives = 170/213 (79.81%), Query Frame = 0 

Query: 2   DKKEQTASEEPRYTWPSDKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGC 61
           DK EQ AS+EP YTW S++K  HGLNNESKT+WD+ V  K V+ NKND I SKAE+ GGC
Sbjct: 366 DKGEQIASQEPSYTWASEQKWVHGLNNESKTQWDQTVGVKAVQGNKNDTILSKAEDTGGC 425

Query: 62  TGSSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNVMQDSGSQTSTALA-ISHAIV 121
            G+SDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVK DCN++ DSGS+TS ALA +SHAIV
Sbjct: 426 IGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKSDCNIVPDSGSKTSIALATLSHAIV 485

Query: 122 QEALAKNQDIAIEPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNV 181
           QEALAK QDIAIEPI  D T F++N  LTKD TIASA ND IT+D+T ASHAEGNPS N 
Sbjct: 486 QEALAKKQDIAIEPITADNTHFRQNLNLTKDVTIASAFNDKITMDKTIASHAEGNPSSNT 545

Query: 182 VLGQRMAYHSDHPDGTVTNPKSFRWKFQSQTAE 214
           VL QRMAYH+DHP GTV NPK     F+ +  E
Sbjct: 546 VLVQRMAYHTDHPGGTVMNPKVSDGNFRVKQKE 578

[Close]
BLAST of Carg22978 vs. TrEMBL
Match: tr|A0A2I4HSG4|A0A2I4HSG4_9ROSI (zinc finger CCCH domain-containing protein 38 isoform X1 OS=Juglans regia OX=51240 GN=LOC109021004 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 0 

Query: 19  DKKCDHGLNNESKTRWDRAVDTKTVRSNKNDAIPSKAENAGGCTGSSDPRGHRKWPSDDM 78
           D +  HG++ E K+  D AVD K V +N+        ENAG   G S+ RG  KW   DM
Sbjct: 404 DTRWGHGMDKEKKSCGDPAVD-KAVENNEKAGHLWMEENAGASIGISESRGAEKW-LGDM 463

Query: 79  EMSPDWHYPVQPSNHVVKGD----CNVMQDSGSQTSTALAISHAIVQEALAKNQDIA--I 138
           +MSPDW+Y VQ +NH VK +        Q  GS   + +A    I +EA  +    A  +
Sbjct: 464 DMSPDWNYGVQSANHAVKEEHGQITQAPQSLGSYDPSLMARGQDITKEASVQFHGAAATV 523

Query: 139 EPIVVDITRFQKNQTLTKDDTIASASNDNITIDRTAASHAEGNPSGNVVLGQ 185
           +PI+ + + F++N  L  D     + +D I +++T +S A+ N S N++ GQ
Sbjct: 524 QPIINEKSYFKQNHNLMGDGANVVSCDDKIAVEKTVSSSADLNVSANIMPGQ 573

The following BLAST results are available for this feature:
BLAST of Carg22978 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949980.14.4e-10894.37zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata][more]
XP_022949975.14.4e-10894.37zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >X... [more]
XP_022949981.14.4e-10894.37zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata][more]
XP_022949979.14.4e-10894.37zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata][more]
XP_022949982.14.4e-10894.37zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata][more]
BLAST of Carg22978 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22978 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22978 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2H8|A0A1S3B2H8_CUCME2.8e-7973.58zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucumis melo OX=3656... [more]
tr|A0A1S3B223|A0A1S3B223_CUCME2.8e-7973.58zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucumis melo OX=3656... [more]
tr|A0A1S3B2J7|A0A1S3B2J7_CUCME2.8e-7973.58zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KF74|A0A0A0KF74_CUCSA3.5e-7770.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483460 PE=4 SV=1[more]
tr|A0A2I4HSG4|A0A2I4HSG4_9ROSI3.5e-1334.88zinc finger CCCH domain-containing protein 38 isoform X1 OS=Juglans regia OX=512... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22978-RACarg22978-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22978CmoCh02G004410Cucurbita moschata (Rifu)carcmoB1204
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg22978Silver-seed gourdcarcarB619
Carg22978Cucumber (Gy14) v2carcgybB0879
Carg22978Cucumber (Gy14) v1carcgyB1011
Carg22978Cucurbita maxima (Rimu)carcmaB1232
Carg22978Cucurbita maxima (Rimu)carcmaB1233
Carg22978Cucurbita pepo (Zucchini)carcpeB1241
Carg22978Cucurbita pepo (Zucchini)carcpeB1243
Carg22978Wild cucumber (PI 183967)carcpiB0926
Carg22978Wild cucumber (PI 183967)carcpiB0927
Carg22978Cucumber (Chinese Long) v2carcuB0906
Carg22978Cucumber (Chinese Long) v2carcuB0907
Carg22978Cucumber (Chinese Long) v3carcucB0929
Carg22978Cucumber (Chinese Long) v3carcucB0930
Carg22978Bottle gourd (USVL1VR-Ls)carlsiB810
Carg22978Bottle gourd (USVL1VR-Ls)carlsiB808
Carg22978Melon (DHL92) v3.5.1carmeB0877
Carg22978Melon (DHL92) v3.5.1carmeB0881
Carg22978Melon (DHL92) v3.6.1carmedB0885
Carg22978Melon (DHL92) v3.6.1carmedB0889
Carg22978Watermelon (Charleston Gray)carwcgB0865
Carg22978Watermelon (Charleston Gray)carwcgB0867
Carg22978Watermelon (Charleston Gray)carwcgB0868
Carg22978Watermelon (97103) v1carwmB0893
Carg22978Watermelon (97103) v1carwmB0894
Carg22978Watermelon (97103) v1carwmB0895
Carg22978Watermelon (97103) v2carwmbB0930
Carg22978Watermelon (97103) v2carwmbB0931
Carg22978Wax gourdcarwgoB1036
Carg22978Wax gourdcarwgoB1037