Carg22977 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22977
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCCH domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_319 : 241704 .. 242743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAATTAATTCTGGAACAACTGTTACTCCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGGCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGGTGATGGCGATAACGAGAACAAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAATGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATACAAAGGGAATTCGTGCTTTCAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGAAGGAAGGTCATATCAGCAAAGATGTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCGCTTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGGTAACTACAAATTTCCTTTCAATTGAGTTCTCTTGTGTTGACTTTGCATGTTATAGCATTTATACTTTGCACTGCCGGCATCTCCTCTCAAATTATCCATTTTATTTGTTTAACTCTTTTATACTTGACAGAAACGATTGTTGCATTTGTTTGAATACAATCCTTTTGTTGCACAATGGTAGGTTATGCACATACTCAAGATTCAAGTTGTAGCTACGATAACATTTTGACGGGCCATTTTTGA

mRNA sequence

ATGTCAGGAATTAATTCTGGAACAACTGTTACTCCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGGCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGGTGATGGCGATAACGAGAACAAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAATGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATACAAAGGGAATTCGTGCTTTCAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGAAGGAAGGTCATATCAGCAAAGATGTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCGCTTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGGTTATGCACATACTCAAGATTCAAGTTGTAGCTACGATAACATTTTGACGGGCCATTTTTGA

Coding sequence (CDS)

ATGTCAGGAATTAATTCTGGAACAACTGTTACTCCGAACATAGTAACGAACGATCAAATTAGGCAAATAACTGACCTTTCAGCTTCTCTTGCACAATATTTTGGAAATGCGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACGCATACTGTGTCAGAAGCACCTTCATTCCCTTATTCGGACGCACCCATGGGTGCTTTGGGGGCAGCGATGAAGACAGGTCCTGTTATTGAATCCTCAAAGCAACACGATTCTGCTCTCTGCAATAGCTTACAGCTGAAGAAACTTGAAGTCACTAAAACACCACAGAAGAGCACTACAGAAGTGAAGGGTGAAGTACAGATACCAAATTTGGCTCTATCATCTGGTCCCTGTGGCATCTCTGCTGAAGAAACTCTTCATGGGAAGCCAACAGTTGATGGCGATGCTATCAAAGAGAAGAATGGTGATGGCGATAACGAGAACAAAACTGACCCAGCAACAAATGAGGACTCTCAAAAGATTGATACGACAGAAAATGCAAATGGAAACGATGAGGTCCATGATAAGAAGAAGAGTAAGGATACAAAGGGAATTCGTGCTTTCAAATTTGCACTTGTGGAGTTTGTCAAGGAACTTCTAAAACCTACATGGAAGGAAGGTCATATCAGCAAAGATGTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTCACAGGCTCCTTGCAGGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCGCTTATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGGTTATGCACATACTCAAGATTCAAGTTGTAGCTACGATAACATTTTGACGGGCCATTTTTGA

Protein sequence

MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLALSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGYAHTQDSSCSYDNILTGHF

Homology

[Close]

BLAST of Carg22977 vs. NCBI nr
Match: XP_022949980.1 (zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata])

HSP 1 Score: 473.0 bits (1216), Expect = 7.1e-130
Identity = 245/267 (91.76%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           M GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPY
Sbjct: 587 MPGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPY 646

Query: 61  SDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLA 120
           SDAPMGALGA+MKT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNL 
Sbjct: 647 SDAPMGALGASMKTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLP 706

Query: 121 LSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDE 180
           LSSGPCGISAEETLHGKPT DGDAIKEKNGDGDNENKT PATNEDSQKIDTTENANGNDE
Sbjct: 707 LSSGPCGISAEETLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDE 766

Query: 181 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 240
           VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG
Sbjct: 767 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 826

Query: 241 HIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           HIPQTQEKID      + K  K    Y
Sbjct: 827 HIPQTQEKIDHYLSFSKSKLTKLVQAY 853

[Close]

BLAST of Carg22977 vs. NCBI nr
Match: XP_022949975.1 (zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949976.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949977.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >XP_022949978.1 zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata])

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 245/255 (96.08%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           M GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPY
Sbjct: 587 MPGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPY 646

Query: 61  SDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLA 120
           SDAPMGALGA+MKT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNL 
Sbjct: 647 SDAPMGALGASMKTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLP 706

Query: 121 LSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDE 180
           LSSGPCGISAEETLHGKPT DGDAIKEKNGDGDNENKT PATNEDSQKIDTTENANGNDE
Sbjct: 707 LSSGPCGISAEETLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDE 766

Query: 181 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 240
           VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG
Sbjct: 767 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 826

Query: 241 HIPQTQEKIDR-LSF 255
           HIPQTQEKID  LSF
Sbjct: 827 HIPQTQEKIDHYLSF 841

[Close]

BLAST of Carg22977 vs. NCBI nr
Match: XP_022949981.1 (zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata])

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 245/255 (96.08%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           M GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPY
Sbjct: 467 MPGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPY 526

Query: 61  SDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLA 120
           SDAPMGALGA+MKT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNL 
Sbjct: 527 SDAPMGALGASMKTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLP 586

Query: 121 LSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDE 180
           LSSGPCGISAEETLHGKPT DGDAIKEKNGDGDNENKT PATNEDSQKIDTTENANGNDE
Sbjct: 587 LSSGPCGISAEETLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDE 646

Query: 181 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 240
           VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG
Sbjct: 647 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 706

Query: 241 HIPQTQEKIDR-LSF 255
           HIPQTQEKID  LSF
Sbjct: 707 HIPQTQEKIDHYLSF 721

[Close]

BLAST of Carg22977 vs. NCBI nr
Match: XP_022949979.1 (zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata])

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 245/255 (96.08%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           M GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPY
Sbjct: 584 MPGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPY 643

Query: 61  SDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLA 120
           SDAPMGALGA+MKT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNL 
Sbjct: 644 SDAPMGALGASMKTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLP 703

Query: 121 LSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDE 180
           LSSGPCGISAEETLHGKPT DGDAIKEKNGDGDNENKT PATNEDSQKIDTTENANGNDE
Sbjct: 704 LSSGPCGISAEETLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDE 763

Query: 181 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 240
           VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG
Sbjct: 764 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 823

Query: 241 HIPQTQEKIDR-LSF 255
           HIPQTQEKID  LSF
Sbjct: 824 HIPQTQEKIDHYLSF 838

[Close]

BLAST of Carg22977 vs. NCBI nr
Match: XP_022949982.1 (zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata])

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 245/255 (96.08%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           M GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTH+VSEAPSFPY
Sbjct: 443 MPGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHSVSEAPSFPY 502

Query: 61  SDAPMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLA 120
           SDAPMGALGA+MKT PVIESSKQHDSALCNSLQLKK+EVTKTPQKSTTEVKGEVQIPNL 
Sbjct: 503 SDAPMGALGASMKTAPVIESSKQHDSALCNSLQLKKIEVTKTPQKSTTEVKGEVQIPNLP 562

Query: 121 LSSGPCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDE 180
           LSSGPCGISAEETLHGKPT DGDAIKEKNGDGDNENKT PATNEDSQKIDTTENANGNDE
Sbjct: 563 LSSGPCGISAEETLHGKPTADGDAIKEKNGDGDNENKTGPATNEDSQKIDTTENANGNDE 622

Query: 181 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 240
           VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG
Sbjct: 623 VHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDG 682

Query: 241 HIPQTQEKIDR-LSF 255
           HIPQTQEKID  LSF
Sbjct: 683 HIPQTQEKIDHYLSF 697

[Close]

BLAST of Carg22977 vs. TAIR10
Match: AT3G18640.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-21
Identity = 85/263 (32.32%), Postives = 110/263 (41.83%), Query Frame = 0


Query: 13  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLN--THTVSEAP------SFPYSDAP 72
           N V+ +QI QIT++SASLAQ+  N QP+PQL  +L    H+ S  P      S   S  P
Sbjct: 445 NTVSREQIDQITNISASLAQFLANGQPIPQLEQALQLPLHSESVQPNQATTQSNVVSSNP 504

Query: 73  MGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLALSSG 132
               G  M TG                           P  + +++    +I  ++L   
Sbjct: 505 NQLWGLGMSTG-----------------------AEGVPAVTASKISNVEEIQEVSLD-- 564

Query: 133 PCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDEVHDK 192
                        P  +GD                                         
Sbjct: 565 -------------PKENGDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 624

Query: 193 KKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQ 252
               D KG+RAFKFALVE VKELLKP WKEG ++KD YK IVKKV +KVTG++Q G++PQ
Sbjct: 625 XXXXDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQSGNVPQ 669

Query: 253 TQEKIDRLSFVFEIKAHKTCSGY 268
           TQEKID      + K  K    Y
Sbjct: 685 TQEKIDHYLSASKPKLTKLVQAY 669

[Close]

BLAST of Carg22977 vs. TAIR10
Match: AT3G26850.1 (histone-lysine N-methyltransferases)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-11
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 141 DGDAIKEKNGDGDNENKTDPAT-NEDSQKIDTTENANGNDEVHDK-----KKSKDTKGIR 200
           + D   +   DG   N  +  T N D++      N +  D    K             ++
Sbjct: 126 EDDEFGKNVDDGRECNSHETLTPNSDNENPKVENNVHEGDNTRKKXXXXXXXXXXXXSMK 185

Query: 201 AFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKIDRLSF 260
            FK  L +FVK+LLKP+W++G++SK+ +KTIVK+VVDKV+ S++   IP+++ KID+   
Sbjct: 186 LFKVVLTKFVKDLLKPSWRQGNMSKEAFKTIVKRVVDKVSNSMEGRRIPKSRAKIDKYID 245

Query: 261 VFEIKAHKTCSGY 268
             + K  K   GY
Sbjct: 246 SSQQKLTKLVMGY 258

[Close]

BLAST of Carg22977 vs. TAIR10
Match: AT2G33835.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-08
Identity = 35/116 (30.17%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 153 DNENKTDPATNEDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTW 212
           D+ +++D ++ + ++K D  +         + +     K +R F+ A+VE +KE+LKP W
Sbjct: 473 DSWHRSDGSSYKKTKKSDEIDG--------EVRSDAGMKVMRLFRTAVVETIKEMLKPLW 532

Query: 213 KEGHISKDVYKTIVKKVVDKVTGSLQDGH-IPQTQEKIDRLSFVFEIKAHKTCSGY 268
           +EG ++KDV+  IVKK  +KV G+    H +P   E +D+   +   +  K   GY
Sbjct: 533 REGRLTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGY 580

[Close]

BLAST of Carg22977 vs. Swiss-Prot
Match: sp|Q9LIH5|C3H38_ARATH (Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=At3g18640 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-20
Identity = 85/263 (32.32%), Postives = 110/263 (41.83%), Query Frame = 0


Query: 13  NIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLN--THTVSEAP------SFPYSDAP 72
           N V+ +QI QIT++SASLAQ+  N QP+PQL  +L    H+ S  P      S   S  P
Sbjct: 445 NTVSREQIDQITNISASLAQFLANGQPIPQLEQALQLPLHSESVQPNQATTQSNVVSSNP 504

Query: 73  MGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTPQKSTTEVKGEVQIPNLALSSG 132
               G  M TG                           P  + +++    +I  ++L   
Sbjct: 505 NQLWGLGMSTG-----------------------AEGVPAVTASKISNVEEIQEVSLD-- 564

Query: 133 PCGISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDEVHDK 192
                        P  +GD                                         
Sbjct: 565 -------------PKENGDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 624

Query: 193 KKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQ 252
               D KG+RAFKFALVE VKELLKP WKEG ++KD YK IVKKV +KVTG++Q G++PQ
Sbjct: 625 XXXXDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQSGNVPQ 669

Query: 253 TQEKIDRLSFVFEIKAHKTCSGY 268
           TQEKID      + K  K    Y
Sbjct: 685 TQEKIDHYLSASKPKLTKLVQAY 669

[Close]

BLAST of Carg22977 vs. Swiss-Prot
Match: sp|Q6YYC0|C3H55_ORYSJ (Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0135800 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-10
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 156 NKTDPATNEDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEG 215
           N+T PA N+  +  DT   AN + E    KKSKD+K ++ FK AL +FVK+ LKPTWKEG
Sbjct: 844 NETTPAENKKEEPKDTDAEANEDGE---NKKSKDSKALKMFKLALADFVKDALKPTWKEG 903

Query: 216 HISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
            +S++V+K                 + PQT+EKID        K +K    Y
Sbjct: 904 QMSREVHK--XXXXXXXXXXXXXXXNTPQTKEKIDIYMSYSREKLNKLVQAY 950

[Close]

BLAST of Carg22977 vs. Swiss-Prot
Match: sp|Q75K81|C3H36_ORYSJ (Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0497500 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-10
Identity = 67/249 (26.91%), Postives = 107/249 (42.97%), Query Frame = 0


Query: 21  RQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSDAPMGALGAAMKTGPVIES 80
           R    +S+S      +A  L  +   +   +V   PSF + D P     +  +  P+++S
Sbjct: 471 RSTLHVSSSSQPVVASAGKLSPIKDEVWITSVPFVPSFNFPDFPGSTSPSKSQYDPLVDS 530

Query: 81  SKQHDSALCNSLQLKKLEVTKTPQKSTTEV--KGEVQIPNLALSSGPCGISAEETLHGKP 140
                    N+L+   +  + + Q   T V   G ++ P          +SA+ + +   
Sbjct: 531 IDPPKVESLNNLKTSNISCSISSQHVDTNVIRGGSLEKPLTFADKLARNVSAKGS-NDFG 590

Query: 141 TVDGDAIKEKNGDGDNENKTDPATNEDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKF 200
            +  D     + DGDN  KT    N+          A+ N+E  D            F+F
Sbjct: 591 LISYDRGHSSSLDGDNRVKTCERKND----------ASLNNEKSD------------FRF 650

Query: 201 ALVEFVKELLKPTWKEGHISKDVYKTIVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEI 260
            LVE VKEL+KP WKEG++SK+ +K IVKK VDK+  SL+   +P+T++ I         
Sbjct: 651 HLVEHVKELVKPIWKEGNLSKEAHKLIVKKSVDKIFASLEPNQMPETEKAITTYITASAP 696

Query: 261 KAHKTCSGY 268
           K  K    Y
Sbjct: 711 KIEKLVKAY 696

[Close]

BLAST of Carg22977 vs. Swiss-Prot
Match: sp|Q84VG7|FES1_ARATH (Protein FRIGIDA-ESSENTIAL 1 OS=Arabidopsis thaliana OX=3702 GN=FES1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-07
Identity = 35/116 (30.17%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 153 DNENKTDPATNEDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTW 212
           D+ +++D ++ + ++K D  +         + +     K +R F+ A+VE +KE+LKP W
Sbjct: 473 DSWHRSDGSSYKKTKKSDEIDG--------EVRSDAGMKVMRLFRTAVVETIKEMLKPLW 532

Query: 213 KEGHISKDVYKTIVKKVVDKVTGSLQDGH-IPQTQEKIDRLSFVFEIKAHKTCSGY 268
           +EG ++KDV+  IVKK  +KV G+    H +P   E +D+   +   +  K   GY
Sbjct: 533 REGRLTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGY 580

[Close]

BLAST of Carg22977 vs. TrEMBL
Match: tr|A0A0A0KF74|A0A0A0KF74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483460 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.9e-81
Identity = 181/284 (63.73%), Postives = 198/284 (69.72%), Query Frame = 0


Query: 3   GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSD 62
           GINSGTT+ PNIVT++QI Q+T+LS SLAQYFGN QPLPQ+Y SLNT +VSE  SF YSD
Sbjct: 585 GINSGTTIAPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQIYNSLNTQSVSETASFSYSD 644

Query: 63  APMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTP---------QKSTTEVKGE 122
           A  GALG  MK+GPV+ESSKQHDSALCNSL+LKKLEVTKTP         QK  TEVK E
Sbjct: 645 ASTGALGLPMKSGPVVESSKQHDSALCNSLELKKLEVTKTPSDCLPNSAGQKIATEVKDE 704

Query: 123 VQIPNLALSSGP---CGISAEETLHG-------KPTVDGDAIKEKNGDGDNENKTDPATN 182
           VQ+PNL LSS P    GISA+ET HG       K   +G+AIKEKN              
Sbjct: 705 VQMPNLPLSSDPRDKVGISAKETFHGSDAINHAKLATEGEAIKEKNXXXXXXXXXXXXXX 764

Query: 183 EDSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYK 242
                       +G   VHDKKKSKD KGIRAFKFALVEFVKELLKPTWKEGHISKDVYK
Sbjct: 765 XXXXXXXXXXXXDG---VHDKKKSKDAKGIRAFKFALVEFVKELLKPTWKEGHISKDVYK 824

Query: 243 TIVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           TIVKKVVDKVTG+LQ GHIPQTQEKID      + K  K    Y
Sbjct: 825 TIVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKSKLTKLVQAY 865

[Close]

BLAST of Carg22977 vs. TrEMBL
Match: tr|A0A1S3B2H8|A0A1S3B2H8_CUCME (zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78
Identity = 177/283 (62.54%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 3   GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSD 62
           GINSGTT+TPNIVT++QI Q+T+LS SLAQYFGN QPLPQLY SLNT +VSE  SFPYSD
Sbjct: 588 GINSGTTITPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQLYNSLNTQSVSETASFPYSD 647

Query: 63  APMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTP---------QKSTTEVKGE 122
           A  GALG   K+GPV+ESSKQHDSALCNSL+LKK EVTKTP         QKSTTEVK E
Sbjct: 648 ASTGALGLPTKSGPVVESSKQHDSALCNSLELKKFEVTKTPSDCLPNAAGQKSTTEVKDE 707

Query: 123 VQIPNLALSS--GPCGISAEETL-------HGKPTVDGDAIKEKNGDGDNENKTDPATNE 182
           VQ+PNL  S       ISA+ETL       H KP  DG+A KE                 
Sbjct: 708 VQMPNLPPSDPRDKVDISAKETLHRSDAINHAKPAADGEATKEXXXXXXXXXXXXXXXXX 767

Query: 183 DSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 242
                       G    HDKKK KD KGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT
Sbjct: 768 XXXXXXXXXXXXG---AHDKKKGKDAKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 827

Query: 243 IVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           IVKKVVDKVTG+LQ GHIPQTQEKID      + K  K    Y
Sbjct: 828 IVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKSKLTKLVQAY 867

[Close]

BLAST of Carg22977 vs. TrEMBL
Match: tr|A0A1S3B223|A0A1S3B223_CUCME (zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78
Identity = 177/283 (62.54%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 3   GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSD 62
           GINSGTT+TPNIVT++QI Q+T+LS SLAQYFGN QPLPQLY SLNT +VSE  SFPYSD
Sbjct: 585 GINSGTTITPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQLYNSLNTQSVSETASFPYSD 644

Query: 63  APMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTP---------QKSTTEVKGE 122
           A  GALG   K+GPV+ESSKQHDSALCNSL+LKK EVTKTP         QKSTTEVK E
Sbjct: 645 ASTGALGLPTKSGPVVESSKQHDSALCNSLELKKFEVTKTPSDCLPNAAGQKSTTEVKDE 704

Query: 123 VQIPNLALSS--GPCGISAEETL-------HGKPTVDGDAIKEKNGDGDNENKTDPATNE 182
           VQ+PNL  S       ISA+ETL       H KP  DG+A KE                 
Sbjct: 705 VQMPNLPPSDPRDKVDISAKETLHRSDAINHAKPAADGEATKEXXXXXXXXXXXXXXXXX 764

Query: 183 DSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 242
                       G    HDKKK KD KGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT
Sbjct: 765 XXXXXXXXXXXXG---AHDKKKGKDAKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 824

Query: 243 IVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           IVKKVVDKVTG+LQ GHIPQTQEKID      + K  K    Y
Sbjct: 825 IVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKSKLTKLVQAY 864

[Close]

BLAST of Carg22977 vs. TrEMBL
Match: tr|A0A1S3B2J7|A0A1S3B2J7_CUCME (zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485269 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78
Identity = 177/283 (62.54%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 3   GINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPYSD 62
           GINSGTT+TPNIVT++QI Q+T+LS SLAQYFGN QPLPQLY SLNT +VSE  SFPYSD
Sbjct: 451 GINSGTTITPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQLYNSLNTQSVSETASFPYSD 510

Query: 63  APMGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVTKTP---------QKSTTEVKGE 122
           A  GALG   K+GPV+ESSKQHDSALCNSL+LKK EVTKTP         QKSTTEVK E
Sbjct: 511 ASTGALGLPTKSGPVVESSKQHDSALCNSLELKKFEVTKTPSDCLPNAAGQKSTTEVKDE 570

Query: 123 VQIPNLALSS--GPCGISAEETL-------HGKPTVDGDAIKEKNGDGDNENKTDPATNE 182
           VQ+PNL  S       ISA+ETL       H KP  DG+A KE                 
Sbjct: 571 VQMPNLPPSDPRDKVDISAKETLHRSDAINHAKPAADGEATKEXXXXXXXXXXXXXXXXX 630

Query: 183 DSQKIDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 242
                       G    HDKKK KD KGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT
Sbjct: 631 XXXXXXXXXXXXG---AHDKKKGKDAKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKT 690

Query: 243 IVKKVVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           IVKKVVDKVTG+LQ GHIPQTQEKID      + K  K    Y
Sbjct: 691 IVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKSKLTKLVQAY 730

[Close]

BLAST of Carg22977 vs. TrEMBL
Match: tr|A0A1J7GN09|A0A1J7GN09_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_20555 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 113/279 (40.50%), Postives = 164/279 (58.78%), Query Frame = 0


Query: 1   MSGINSGTTVTPNIVTNDQIRQITDLSASLAQYFGNAQPLPQLYASLNTHTVSEAPSFPY 60
           +S ++S    T N+V+N+Q+ Q+++LSASLA   G  Q LPQLYA+LN++   +  S   
Sbjct: 693 LSQVSSRNPPTKNMVSNEQLTQLSNLSASLAHILGTGQQLPQLYAALNSNDAKDTSSLAK 752

Query: 61  SDAP-MGALGAAMKTGPVIESSKQHDSALCNSLQLKKLEVT-KTP--QKSTTEVKGEVQI 120
           ++ P +      +K  PV+   KQ+D  +C+S++ KK+  +  TP    S    K + +I
Sbjct: 753 TEVPAIPVSNTFIKPDPVLGYRKQYD-PMCDSIETKKVVASGATPAFSPSKKNAKDKAEI 812

Query: 121 PNLALSSG--PCG------ISAEETLHGKPTVDGDAIKEKNGDGDNENKTDPATNEDSQK 180
           P+LA +SG   CG       S E  +  +P  + +  KEKN     + +  P  ++++++
Sbjct: 813 PSLASNSGRRNCGNSFKAACSEEHLIQLQPGRNLEVNKEKNEVVVEDRQNSPGDHKNTKE 872

Query: 181 IDTTENANGNDEVHDKKKSKDTKGIRAFKFALVEFVKELLKPTWKEGHISKDVYKTIVKK 240
               EN +      D KKSKDTKG+R FKFALV+ VKELLKP WKEG I+K+ YK IVKK
Sbjct: 873 NGPLENMDQKGGPDDDKKSKDTKGVRTFKFALVDLVKELLKPAWKEGQINKEDYKAIVKK 932

Query: 241 VVDKVTGSLQDGHIPQTQEKIDRLSFVFEIKAHKTCSGY 268
           VVDKVTG++Q  +IPQTQEKID      + K  K    Y
Sbjct: 933 VVDKVTGTMQGTNIPQTQEKIDHYLSFSKPKLSKLVQAY 970

The following BLAST results are available for this feature:

BLAST of Carg22977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949980.1	7.1e-130	91.76	zinc finger CCCH domain-containing protein 38 isoform X3 [Cucurbita moschata]	[more]
XP_022949975.1	1.2e-129	96.08	zinc finger CCCH domain-containing protein 38 isoform X1 [Cucurbita moschata] >X...	[more]
XP_022949981.1	1.2e-129	96.08	zinc finger CCCH domain-containing protein 38 isoform X4 [Cucurbita moschata]	[more]
XP_022949979.1	1.2e-129	96.08	zinc finger CCCH domain-containing protein 38 isoform X2 [Cucurbita moschata]	[more]
XP_022949982.1	1.2e-129	96.08	zinc finger CCCH domain-containing protein 38 isoform X5 [Cucurbita moschata]	[more]

BLAST of Carg22977 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18640.1	3.9e-21	32.32	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G26850.1	3.6e-11	33.08	histone-lysine N-methyltransferases	[more]
AT2G33835.1	3.8e-08	30.17	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of Carg22977 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LIH5\|C3H38_ARATH	7.0e-20	32.32	Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q6YYC0\|C3H55_ORYSJ	1.3e-10	39.29	Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q75K81\|C3H36_ORYSJ	5.0e-10	26.91	Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q84VG7\|FES1_ARATH	6.8e-07	30.17	Protein FRIGIDA-ESSENTIAL 1 OS=Arabidopsis thaliana OX=3702 GN=FES1 PE=1 SV=2	[more]

BLAST of Carg22977 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF74\|A0A0A0KF74_CUCSA	6.9e-81	63.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483460 PE=4 SV=1	[more]
tr\|A0A1S3B2H8\|A0A1S3B2H8_CUCME	5.5e-78	62.54	zinc finger CCCH domain-containing protein 38 isoform X1 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3B223\|A0A1S3B223_CUCME	5.5e-78	62.54	zinc finger CCCH domain-containing protein 38 isoform X2 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3B2J7\|A0A1S3B2J7_CUCME	5.5e-78	62.54	zinc finger CCCH domain-containing protein 38 isoform X3 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1J7GN09\|A0A1J7GN09_LUPAN	1.1e-38	40.50	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_20555 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22977-RA	Carg22977-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..187
None	No IPR available	PANTHER	PTHR36886	FAMILY NOT NAMED	coord: 7..250
None	No IPR available	PANTHER	PTHR36886:SF3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38	coord: 7..250

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22977	CmoCh02G004400	Cucurbita moschata (Rifu)	carcmoB1204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22977	Wax gourd	carwgoB1036
Carg22977	Wax gourd	carwgoB1037
Carg22977	Silver-seed gourd	carcarB619
Carg22977	Cucumber (Gy14) v2	carcgybB0879
Carg22977	Cucumber (Gy14) v1	carcgyB1011
Carg22977	Cucurbita maxima (Rimu)	carcmaB1232
Carg22977	Cucurbita maxima (Rimu)	carcmaB1233
Carg22977	Cucurbita pepo (Zucchini)	carcpeB1241
Carg22977	Cucurbita pepo (Zucchini)	carcpeB1243
Carg22977	Wild cucumber (PI 183967)	carcpiB0926
Carg22977	Wild cucumber (PI 183967)	carcpiB0927
Carg22977	Cucumber (Chinese Long) v2	carcuB0906
Carg22977	Cucumber (Chinese Long) v2	carcuB0907
Carg22977	Cucumber (Chinese Long) v3	carcucB0929
Carg22977	Cucumber (Chinese Long) v3	carcucB0930
Carg22977	Bottle gourd (USVL1VR-Ls)	carlsiB810
Carg22977	Bottle gourd (USVL1VR-Ls)	carlsiB808
Carg22977	Melon (DHL92) v3.5.1	carmeB0877
Carg22977	Melon (DHL92) v3.5.1	carmeB0881
Carg22977	Melon (DHL92) v3.6.1	carmedB0885
Carg22977	Melon (DHL92) v3.6.1	carmedB0889
Carg22977	Watermelon (Charleston Gray)	carwcgB0865
Carg22977	Watermelon (Charleston Gray)	carwcgB0867
Carg22977	Watermelon (Charleston Gray)	carwcgB0868
Carg22977	Watermelon (97103) v1	carwmB0893
Carg22977	Watermelon (97103) v1	carwmB0894
Carg22977	Watermelon (97103) v1	carwmB0895
Carg22977	Watermelon (97103) v2	carwmbB0930
Carg22977	Watermelon (97103) v2	carwmbB0931