Carg22959 (gene) Silver-seed gourd

Overview
NameCarg22959
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHTH-type transcriptional regulator
LocationCucurbita_argyrosperma_scaffold_319 : 133416 .. 133817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTTTGTGCCTCATCTCAGAACTCGAGTGCTAGCAGCCTCACAAACTGGCCTTCAACAGCAAAAATTATCCATACAGATGGTAGGCTTCAAGAATTGAGGCATCCAGTAAAGGCCGGCCACATTCTTGATCAAAACCCTAATTGCTTTCTCTGCAGTTCAGAATCTATGAAGATCGATTCGATCATTCCCCAAATATCCAGCAACAGAGAGCTCGAATTAGGAGAAATTTATTTTCTAATCCCGCTCGCTAAAGCGCACCTGCCGATCTCCCTCACGGAGCTGTGTTCTTTGGCCGCCAAAGCAAGTGTGGCCCTCGCAAACTCCAAGAAGCCATATTCGTCTTTGAAAGCGGCGCCGCCCTCCGTCGGGTACCGAATCGGAGCCCCGGGGGCATAG

mRNA sequence

ATGGGGGTTTGTGCCTCATCTCAGAACTCGAGTGCTAGCAGCCTCACAAACTGGCCTTCAACAGCAAAAATTATCCATACAGATGGTAGGCTTCAAGAATTGAGGCATCCAGTAAAGGCCGGCCACATTCTTGATCAAAACCCTAATTGCTTTCTCTGCAGTTCAGAATCTATGAAGATCGATTCGATCATTCCCCAAATATCCAGCAACAGAGAGCTCGAATTAGGAGAAATTTATTTTCTAATCCCGCTCGCTAAAGCGCACCTGCCGATCTCCCTCACGGAGCTGTGTTCTTTGGCCGCCAAAGCAAGTGTGGCCCTCGCAAACTCCAAGAAGCCATATTCGTCTTTGAAAGCGGCGCCGCCCTCCGTCGGGTACCGAATCGGAGCCCCGGGGGCATAG

Coding sequence (CDS)

ATGGGGGTTTGTGCCTCATCTCAGAACTCGAGTGCTAGCAGCCTCACAAACTGGCCTTCAACAGCAAAAATTATCCATACAGATGGTAGGCTTCAAGAATTGAGGCATCCAGTAAAGGCCGGCCACATTCTTGATCAAAACCCTAATTGCTTTCTCTGCAGTTCAGAATCTATGAAGATCGATTCGATCATTCCCCAAATATCCAGCAACAGAGAGCTCGAATTAGGAGAAATTTATTTTCTAATCCCGCTCGCTAAAGCGCACCTGCCGATCTCCCTCACGGAGCTGTGTTCTTTGGCCGCCAAAGCAAGTGTGGCCCTCGCAAACTCCAAGAAGCCATATTCGTCTTTGAAAGCGGCGCCGCCCTCCGTCGGGTACCGAATCGGAGCCCCGGGGGCATAG

Protein sequence

MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKIDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAAPPSVGYRIGAPGA
Homology
[Close]
BLAST of Carg22959 vs. NCBI nr
Match: XP_022947861.1 (uncharacterized protein LOC111451619 [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 5.8e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI
Sbjct: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120
           DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA
Sbjct: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120

Query: 121 PPSVGYRIGAPGA 134
           PPSVGYRIGAPGA
Sbjct: 121 PPSVGYRIGAPGA 133

[Close]
BLAST of Carg22959 vs. NCBI nr
Match: XP_023006833.1 (uncharacterized protein LOC111499506 [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 8.3e-65
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI
Sbjct: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120
           DSIIPQISSNRELELGEIYFLIPLAKA+LPISLTELCSLAAKASVALANSKKPYSSLKAA
Sbjct: 61  DSIIPQISSNRELELGEIYFLIPLAKANLPISLTELCSLAAKASVALANSKKPYSSLKAA 120

Query: 121 PPSVGYRIGAPGA 134
           PP+VGYRIGAPGA
Sbjct: 121 PPAVGYRIGAPGA 133

[Close]
BLAST of Carg22959 vs. NCBI nr
Match: XP_022148561.1 (uncharacterized protein LOC111017195 [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 1.7e-54
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQ+SSA SLTNWP TAKIIHTDG LQELRHPVKAGHIL QNP+CFLCSSESMKI
Sbjct: 1   MGVCASSQHSSA-SLTNWPFTAKIIHTDGGLQELRHPVKAGHILSQNPSCFLCSSESMKI 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120
           DSI+PQISS+RELELGEIYFLIPLAK+HLP+SLT+LC+LAAKA+VALA SKK Y SLKAA
Sbjct: 61  DSIVPQISSDRELELGEIYFLIPLAKSHLPLSLTDLCALAAKANVALATSKKAYPSLKAA 120

Query: 121 PPSVGYRIGAPGA 134
           P +VG+RIGAPGA
Sbjct: 121 PNAVGFRIGAPGA 132

[Close]
BLAST of Carg22959 vs. NCBI nr
Match: XP_023512236.1 (uncharacterized protein LOC111777025 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 6.8e-51
Identity = 110/133 (82.71%), Postives = 122/133 (91.73%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQ+SS  SLTNWP TAKIIH DGRLQELRHPVKA HIL+QNPNCFLCSSESMKI
Sbjct: 1   MGVCASSQHSS-PSLTNWPFTAKIIHIDGRLQELRHPVKASHILNQNPNCFLCSSESMKI 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120
           +SI+PQISS+RELELGEIYFLIPLAK+ LPISLT LC+LAAKA+VALA+SKK Y S+KAA
Sbjct: 61  NSIVPQISSDRELELGEIYFLIPLAKSDLPISLTILCALAAKANVALASSKKAYPSMKAA 120

Query: 121 PPSVGYRIGAPGA 134
           P +VG+RI APGA
Sbjct: 121 PAAVGHRIRAPGA 132

[Close]
BLAST of Carg22959 vs. NCBI nr
Match: XP_022944054.1 (uncharacterized protein LOC111448604 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 109/132 (82.58%), Postives = 120/132 (90.91%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQ+SS  SLTNWP TAKIIH DGRLQELRHPVKA HIL+QNPNCFLCSSESMKI
Sbjct: 1   MGVCASSQHSS-PSLTNWPFTAKIIHIDGRLQELRHPVKASHILNQNPNCFLCSSESMKI 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKAA 120
           +SI+PQISS+RELELGEIYFLIPLAK+ LPISLT LC+LAAKA+VALA+SKK Y S+KAA
Sbjct: 61  NSIVPQISSDRELELGEIYFLIPLAKSDLPISLTILCALAAKANVALASSKKAYPSMKAA 120

Query: 121 PPSVGYRIGAPG 133
           P +V YRI APG
Sbjct: 121 PAAVAYRIRAPG 131

[Close]
BLAST of Carg22959 vs. TAIR10
Match: AT2G23690.1 (unknown protein)

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-20
Identity = 44/110 (40.00%), Postives = 71/110 (64.55%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MG+C+S +++         +TAK+I  DGR+ E   PVK G++L +NP CF+C+S+ M  
Sbjct: 1   MGICSSYESTQV-------ATAKLILHDGRMMEFTSPVKVGYVLQKNPMCFICNSDDMDF 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANS 111
           D+++  IS++ E +LG++YF +PL+  H  +   E+ +LA KAS AL  S
Sbjct: 61  DNVVSAISADEEFQLGQLYFALPLSSLHHSLKAEEMAALAVKASSALMRS 103

[Close]
BLAST of Carg22959 vs. TAIR10
Match: AT4G37240.1 (unknown protein)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-18
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MG+C+SS+++         +TAK+I  DGR+ E  +PVK G++L + P CF+C+S+ M  
Sbjct: 1   MGICSSSESTQV-------ATAKLILQDGRMMEFANPVKVGYVLLKYPMCFICNSDDMDF 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKAS 105
           D  +  IS++ EL+LG+IYF +PL     P+   E+ +LA KAS
Sbjct: 61  DDAVAAISADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKAS 97

[Close]
BLAST of Carg22959 vs. TAIR10
Match: AT5G66580.1 (unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-16
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MG CAS ++  + S       AK+I  DG LQE   PVK   IL +NP  F+C+S+ M  
Sbjct: 1   MGACASRESLRSDS-------AKLILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDF 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANS 111
           D  +  ++ N EL  G++YF++PL   + P+   E+ +LA KAS AL  S
Sbjct: 61  DDAVSAVAGNEELRSGQLYFVLPLTWLNHPLRAEEMAALAVKASSALTKS 103

[Close]
BLAST of Carg22959 vs. TAIR10
Match: AT3G50800.1 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MG CAS ++           TAK+I  DG LQE   PVK   IL +NP  F+C+S+ M  
Sbjct: 1   MGACASRESRRT-------ETAKLILPDGTLQEFSTPVKVWQILQKNPTSFVCNSDDMDF 60

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANS 111
           D  +  +  + +L  GE+YF++PL   + P+   E+ +LA KAS ALA S
Sbjct: 61  DDAVLAVPGSEDLRPGELYFVLPLTWLNHPLRADEMAALAVKASSALAKS 103

[Close]
BLAST of Carg22959 vs. TAIR10
Match: AT1G21010.1 (unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-12
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILD-------------QN 60
           MG+C S +   ++S      T KI+  +G L+E   PV A  +L+             + 
Sbjct: 1   MGICVSFRREDSNS----SPTVKIVTVNGDLREYNVPVIASQVLEAESAAAXXXXXXXRP 60

Query: 61  PNCFLCSSESMKIDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVAL 116
            + F+C S+S+  D  IP I S   L+  +IYF++P++K    ++ +++ +LA KASVA+
Sbjct: 61  SSYFICDSDSLYYDDFIPAIKSEEPLQADQIYFVLPISKRQSRLTASDMAALAVKASVAI 120

[Close]
BLAST of Carg22959 vs. TrEMBL
Match: tr|A0A0A0LIX5|A0A0A0LIX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G239380 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMKI 60
           MGVCASSQ+S+A SLTNWP TAKIIHTDGRLQELRHPVKA HIL+QNPNCFLCSSESMKI
Sbjct: 47  MGVCASSQHSNA-SLTNWPFTAKIIHTDGRLQELRHPVKASHILNQNPNCFLCSSESMKI 106

Query: 61  DSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKA 120
            SI+PQISS+RELELGEIYFLIPL K+HLPISLT+LCSLAAKA+VALA+SKK + SLKA
Sbjct: 107 GSIVPQISSDRELELGEIYFLIPLKKSHLPISLTDLCSLAAKANVALASSKKAHPSLKA 164

[Close]
BLAST of Carg22959 vs. TrEMBL
Match: tr|F6HQJ2|F6HQJ2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01950 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 71/127 (55.91%), Postives = 92/127 (72.44%), Query Frame = 0 

Query: 1   MGVCASSQNSSASS-LTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMK 60
           MG+C+SS   S +    +WPSTAKIIH DG+LQE  HP++AG IL QNPNCFLCSSESM 
Sbjct: 1   MGICSSSHLMSKNGRCLSWPSTAKIIHLDGKLQEFLHPIQAGLILSQNPNCFLCSSESMF 60

Query: 61  IDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLK- 120
           I+S  PQ+    EL+LG+IYFL+PL+K+  P+SL +LC LA KAS A+A+    + ++K 
Sbjct: 61  INSHAPQVPDKEELQLGQIYFLMPLSKSRSPLSLQDLCILAVKASAAIAHPNTAHLAIKT 120

Query: 121 --AAPPS 124
             AA PS
Sbjct: 121 GRAAFPS 127

[Close]
BLAST of Carg22959 vs. TrEMBL
Match: tr|B9HRT2|B9HRT2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G110700v3 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 0 

Query: 1   MGVCASSQNS----SASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSE 60
           MG CAS Q +          NWPSTAKIIH DGRLQE R P+KA HIL  NP  FLCSSE
Sbjct: 1   MGNCASPQYTKKVGGGGGGLNWPSTAKIIHVDGRLQEFRQPIKASHILSLNPKSFLCSSE 60

Query: 61  SMKIDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANS 111
           SM ID  +PQ+  + EL+LG++YFL+PL+K+++P+SL ELC+LA+KAS +LA S
Sbjct: 61  SMYIDCHLPQVPDDEELQLGQLYFLVPLSKSNVPLSLQELCALASKASASLAQS 114

[Close]
BLAST of Carg22959 vs. TrEMBL
Match: tr|A0A2I4DJ01|A0A2I4DJ01_9ROSI (uncharacterized protein LOC108980611 OS=Juglans regia OX=51240 GN=LOC108980611 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 68/124 (54.84%), Postives = 89/124 (71.77%), Query Frame = 0 

Query: 1   MGVCASSQNSSASSLTN-WPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSESMK 60
           MG+CAS        +   WPSTAK+I  DG+LQE RHP  AG IL  NPNCFLC S+SM 
Sbjct: 1   MGICASGAYERKGGIAPFWPSTAKLIDLDGKLQEFRHPTIAGRILSHNPNCFLCCSDSMY 60

Query: 61  IDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKKPYSSLKA 120
           I+S +P I  N EL+LG+IYFL+PL+K+H+P+SL +LC+LA KAS+ALA+S    +S++ 
Sbjct: 61  INSSVPLIPKNEELQLGQIYFLLPLSKSHVPLSLQDLCALAIKASLALAHSDP--ASMRC 120

Query: 121 APPS 124
             PS
Sbjct: 121 TFPS 122

[Close]
BLAST of Carg22959 vs. TrEMBL
Match: tr|W9RBP1|W9RBP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026971 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-27
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 1   MGVCASSQ---NSSASSLTNWPSTAKIIHTDGRLQELRHPVKAGHILDQNPNCFLCSSES 60
           MG+CAS Q   N +  SL NW +  +IIH +G+LQE  HPVK+G +L QNPNCFLCSSES
Sbjct: 1   MGICASLQYTTNKARMSLINWQNATQIIHFEGKLQEYIHPVKSGQVLSQNPNCFLCSSES 60

Query: 61  MKIDSIIPQISSNRELELGEIYFLIPLAKAHLPISLTELCSLAAKASVALANSKK 113
           M + + +PQ+ +N EL+ G+IYFL+PL++A  P+SL +LC+LA KAS AL+ S K
Sbjct: 61  MFVGAHVPQLPTNEELQPGQIYFLLPLSQAKTPLSLQDLCALAIKASSALSASNK 115

The following BLAST results are available for this feature:
BLAST of Carg22959 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947861.15.8e-66100.00uncharacterized protein LOC111451619 [Cucurbita moschata][more]
XP_023006833.18.3e-6598.50uncharacterized protein LOC111499506 [Cucurbita maxima][more]
XP_022148561.11.7e-5485.71uncharacterized protein LOC111017195 [Momordica charantia][more]
XP_023512236.16.8e-5182.71uncharacterized protein LOC111777025 [Cucurbita pepo subsp. pepo][more]
XP_022944054.12.0e-5082.58uncharacterized protein LOC111448604 [Cucurbita moschata][more]
BLAST of Carg22959 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23690.19.9e-2040.00unknown protein[more]
AT4G37240.13.2e-1841.35unknown protein[more]
AT5G66580.13.9e-1640.00unknown protein[more]
AT3G50800.11.5e-1540.00unknown protein[more]
AT1G21010.19.9e-1232.03unknown protein[more]
BLAST of Carg22959 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22959 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIX5|A0A0A0LIX5_CUCSA1.8e-4785.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G239380 PE=4 SV=1[more]
tr|F6HQJ2|F6HQJ2_VITVI4.1e-2855.91Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01950 PE=4 SV=... [more]
tr|B9HRT2|B9HRT2_POPTR4.1e-2858.77Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G110700v3 PE=... [more]
tr|A0A2I4DJ01|A0A2I4DJ01_9ROSI1.2e-2754.84uncharacterized protein LOC108980611 OS=Juglans regia OX=51240 GN=LOC108980611 P... [more]
tr|W9RBP1|W9RBP1_9ROSA3.5e-2755.65Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026971 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22959-RACarg22959-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..113
e-value: 1.2E-22
score: 81.1
NoneNo IPR availablePANTHERPTHR33052FAMILY NOT NAMEDcoord: 1..113
NoneNo IPR availablePANTHERPTHR33052:SF21SUBFAMILY NOT NAMEDcoord: 1..113

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22959Cla010301Watermelon (97103) v1carwmB0893
Carg22959Csa2G239380Cucumber (Chinese Long) v2carcuB0906
Carg22959ClCG09G017880Watermelon (Charleston Gray)carwcgB0865
Carg22959CSPI02G11970Wild cucumber (PI 183967)carcpiB0926
Carg22959Cucsa.109810Cucumber (Gy14) v1carcgyB1012
Carg22959CmaCh02G004170Cucurbita maxima (Rimu)carcmaB1233
Carg22959CmaCh20G008640Cucurbita maxima (Rimu)carcmaB1232
Carg22959CmoCh20G008740Cucurbita moschata (Rifu)carcmoB1203
Carg22959Lsi10G003440Bottle gourd (USVL1VR-Ls)carlsiB808
Carg22959Cp4.1LG05g12480Cucurbita pepo (Zucchini)carcpeB1243
Carg22959Cp4.1LG16g02270Cucurbita pepo (Zucchini)carcpeB1242
Carg22959CsGy2G012010Cucumber (Gy14) v2carcgybB0879
Carg22959CsaV3_2G014500Cucumber (Chinese Long) v3carcucB0929
Carg22959Cla97C09G179290Watermelon (97103) v2carwmbB0931
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22959Carg23636Silver-seed gourdcarcarB619
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22959Cucumber (Gy14) v2carcgybB0880
Carg22959Cucumber (Gy14) v1carcgyB1011
Carg22959Cucumber (Gy14) v1carcgyB1013
Carg22959Cucurbita moschata (Rifu)carcmoB1204
Carg22959Cucurbita pepo (Zucchini)carcpeB1241
Carg22959Wild cucumber (PI 183967)carcpiB0927
Carg22959Wild cucumber (PI 183967)carcpiB0928
Carg22959Cucumber (Chinese Long) v2carcuB0907
Carg22959Cucumber (Chinese Long) v2carcuB0908
Carg22959Cucumber (Chinese Long) v3carcucB0930
Carg22959Cucumber (Chinese Long) v3carcucB0931
Carg22959Bottle gourd (USVL1VR-Ls)carlsiB810
Carg22959Bottle gourd (USVL1VR-Ls)carlsiB809
Carg22959Melon (DHL92) v3.5.1carmeB0877
Carg22959Melon (DHL92) v3.5.1carmeB0880
Carg22959Melon (DHL92) v3.5.1carmeB0881
Carg22959Melon (DHL92) v3.6.1carmedB0885
Carg22959Melon (DHL92) v3.6.1carmedB0888
Carg22959Melon (DHL92) v3.6.1carmedB0889
Carg22959Watermelon (Charleston Gray)carwcgB0867
Carg22959Watermelon (Charleston Gray)carwcgB0868
Carg22959Watermelon (97103) v1carwmB0894
Carg22959Watermelon (97103) v1carwmB0895
Carg22959Watermelon (97103) v2carwmbB0930
Carg22959Wax gourdcarwgoB1036
Carg22959Wax gourdcarwgoB1037