Carg22930 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22930
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ubiquitin fusion degradation 1
Location	Cucurbita_argyrosperma_scaffold_124 : 414106 .. 418747 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTGATGCTTAAACGATCAAGCCGATCAAACGGTCTCCTTCTCCCTCTCTGCGCTTCCTCCAGCGACCGATCGTTCATCGGCGACTTGCTTCTCCGTTGTTCGTCTCCGGTACGGCTGAAGTATCGTCATGTCATGCATATATACGATTCGAATTCTATGATAGTTAAGATGATGTTCTGGTTGTTTGCTTGCTGAGAAAGCTGAGTGACCGAAAATTTGAATTTTCCGTCTTTGCGTTTTTTCATATGTATAAGCGCATTCGTTTTTTAGTAGGATTATTTTGTGTTTCGTTTATCGGAAAATATAAGTTGTTTGTTACCTGTGGCCGAAGAAAGATAAACATAGCAACTTAAGGTGCATTCAGTCTGATTTTTGGTTTGCTATTGATTGGTTGTTGTTGGTGTGAGTTCTGAAATTTTTTCATATTATGGTATAGTTTGCCTTGGTTTTTGTTTCTTTCTTTGTATCTGTTGTTTCATGTTTGACATTGAAGCGGAATGGAAGTGAGGATTTGCTTTCTTTCTTTGTTTTTATTTTTACTGCTGTTTTGGTGATGAATCAGTTTGATGCAAGAGATGTTCTTATAATAGCTACTAAGCGGTTTAAGTTATGCTGAGGTTTGTGATTTCGTACTTTTCAAACATCTGGTTTTCTCACATATTTTACAACATGCAGTTCTTCGTCGGTCCGTTGGGAGCCTGTAAGAGGTTAATTATCCGTTGTGGAACTCTATAAAAGCTCTATAAAATGGTATGCATGCCCTTTTCAGACTGTTAAAAATAGAATCTCTGACGTTATGTGAAACGGCATTGGATTCTTATATTATCTGTGTGATGAGAAAATAAAGAAAAGCTATGAAATTATCTCAATGTTTATGATGAGGATTTGAATCTCATCGACCCACAGAAGATTCTACTTTCCCTCAATTTAAGAAATCGCTGCTTTCTGCTTTTAGATAACTACATTAGTGCGTTGTGTTAATCCTAGACCTAAGACGTGTTGCTTGTTCTGGCTGTGGAACACAACTTGATTTATCCAAATGTTTGATATTTATTTCTGCTCTCTGAAACCTGCTAACTGCTATGATTTATGGTAGATGGTCATACCACTCCGGTTTTTTTTTTTTCCCTAAATTTCTTTTCAATTTATACTCTCACTTGGTAGAAGCAGTTTGTTACTTAAACAATTGACGTTTGTTGAAGTTTACACTTTACTCTAACTGTGCCTACGTTGTTACTATTTCTGCAATTCACTGGCCTTCAACTCTCCATCTTAGGAGGGTTCTTACTGTGAAGATATAATTACATTTTTCTAAAAAAAGAGATTGGTTAGCTTTTGTAGTCATATTGCAATTAATGTTCTCTCTATCTTTCTGCATGTGCAGTATTTTGATGGGTATGATGGGTATGGTTATCGTGGAGCATCATTTGAGCAAAGATATCAATGCTTCTCTGCATCATTTATTGATAAGGTTTGACTACCCTCTACATCTATTACCATTTTTAGAAATGTTCTCACTTGGCGTTTGAGGAGGTTCTTGGCTTCATTGCATTTTCACTGTTTAGTAATTATTATGCATATCAAAGGACTTCTTCATGCTAGAAATTAAATGTAGGTAGCAGTTGCAATATGCTCTTTATTTGTTTGAAGCGCGAGCATGTAATAAGCATTGCTTTTGCATTAATTTTTTTTAAAAGCTTGGAATTTCACGTAATATCACACAACTGCTGCTCATGTCTCTAATTTGTAGGTCAATACAGTAGAAGGTAAATATATATTGGAATGTTGCTTTTCATCTTAAAAGGCCTTTCAAGTATCTGTTTTTGCATGCATAAAACTGAACTGTTTTCTTTCTTCCGAAATAGATAGTTTCTTCTAATTTGAGTTAATCTTTTCATCCTGCAGCCACACATTGAAACTGGAGATAGAAGTAAGATATTCTGTCTTTACCATTCTTATTGTTTAGTTTCTATGTCCTTCATACAGTATTTTCAATTTCATCTTCTTTATCTCTCATGTTGTTTATTTCTTTTTTTTATTTCTTTTTTTTTTTCCAGTTATAATGCCTCCATCAGCCCTTGATCGCCTTGGTTTGTTTGCATATGTCTAAAATTAATTTTTTTGTGCCTGTTTTATCAATGGTTCTTCTCATTGTAGTTGACTGAATTTTAAACATAAACCCATACAGCTTCATTACAAATTGATTATCCAATGTTATTTGAGCTTCGAAATGATGATGCTGAGCGAGTCTCTCATTGTGGGGTATTGGAGTTTGTTGCAGAAGAAGGCAGGATTTACATGCCTTATTGGGTAGGGTCCATATTTCTCTTGCGTTATATGTATCCCAGGTGTTATTAGCTCTGTCTTACTTTTCATCCGAGGATTCTTCTACTTTCTTTCTAATTGTTTACCCTTCAGATGATGGAGAACATGCTTTTACAAGAAGGAGACCTCTTGCATGTGAAGAATGTCACTCTTCCAAAGGGAACTTATGTTAAATTACAACCTCACACAAAGGACTTCTTGGATATCTCCAATCCAAAAGCAATGTGAGCTAACTTTTCAAGTTTTGGTTTATGTGTCTAGTGTTGTTCGCTACTTATTAGTATTTCCAGCTTGGGTCCATAGGAAGGTGTTCTAAAGTTGAAATCCTCTGCCACTTTCTTATTTAATTTGAATACCAATGCGCTAACCTCTGTTAATTTAGCCGTTGTCACGTATATTTTTACCTTAAGCCCAATAAGTACACAAAATCTTGAACATCAAAGTGCCCACCATGCGTTGGCGTTGATCCAATGGTTAAAATAAAAAGCTTCTATCAAATGTCTTTTTAGTTATGGGTTCAAAAGCTCAGGTGTCACTTGGAATGTTGAGTACTAAGGGAAAACTTTTTGACATCAAATGTATGTTTTAGGATTAGACTATTGATTCTTAGGAATAGTTAAGGTGCATGCAAGCTAGTCCAAATCTATACGTATGAAAGAATGCATTGACTGCAGCCTGCTTGGAAGTTCTTTTGGTCTTTCAAGGACATTAGTTACTTGATAAAAGTACCCTTGAGAAAGTTCTATGGTCAATATCAAATTGGTATTTTCAAACTGTCCATACTTGATTTCACAAGTGACAGGACAAATGAAAGCTAATTTTTTTATAGAACAGAAAAATTGTCTGCGCTTGGTAGTGAAGGAAATGTTCAATTTTAGCACATTGCTCGCAAACACTTTTTTGAACTCTTCCATAGTCTTAATAGGGAATGTGGTGGTCTTTCTTTTTTGTTTAGGTAGATCACATGTGATTTCTCTATCTGTATCTCTAAGGGTTGGTGTGATGAAGTTTGTTTCACACAACATATTATTTTTTTTCACACAGCTTAGAGACTACACTCAGGAATTTTTCTTGCCTCACCACTGGGGGCAGTATTATGGTGGCATATAACAACAAGAAATATTACATTGACATAGTCGAAACAAAGCCATCCAATGCAATAAGTATCATTGAGACAGATTGTGAGGTGGATTTTGCACCTCCCCTGGATTACAAGGAACCAGAGAAGCCTACTGCACCAATCAGGGGGAGGGAGCAAGGTGCATAACTTCTACTCCTTTTCTCCAATTCTTACTGCAATTTAGTGCTGCTTCTGTTGTTTTTCTTTTTTTTCTTTTTATCAGTTTGGCGATTTCTCTCATTTTATCAACGCTTATGAAGTTGATATTTTATCCAAGCAGTTTATTAGCTTGTAACCTTACTACAGATTGAGTTTTCTAGTTGCCTGATGTCGTAGTATTTAGTAATCTCGTTGGAGACCATTTCTTTGGTTTGCCCCTTCTTTTCTTGGGCTCTTTTGTTCACGGCGTAGTGTTTAGTAATCTCGTTGAACAAGGCCACTGATTACTATGTTTAGGTATATATAGTGCTTACTCATTTAAATTAATTTTCAAATTTGCTGCAACAAAACTTGGAAGGTATGCATTTAGGAACAAGGCAGTCTCTGTCAAGTTCTCATTGAACTCTCTTGCAGTTGCAGAAGCTCCAGCAGAAGAAGCTGAACCTAAATTTAGTGCTTTCACGGGAACAGGAAGACGTTTGGATGGTAAATCTTCAAGTCACCAGTCCCAGCCTATTTCATCTGCTAGGTCATCTGAGGAGAAGCTATCCGGTGCTGCTAGTAGATATGGCCCTTCACAACAGTCTGCTGGATCTAGCTCAGTCAATGGAACTCGTCAGGCTCAGGGAAAGTTGGTATTTGGACAAAATGCTAATCAAAATCCTAAAGGAACTTCAAAGGTACTCACTTAGCATTTATCATTATGGTGAAAAAAAAAATCATTAAAAAATATATATTATTATATCCATTCAATGAACTATAAAGCAGGTGATACTAATGTTCAAATTTTTGTTAAAATTGGTGAGTTTTGGGAAAGTTATTTTATTTGTCGATCAAACTTAAGTCATTGCATTTCGCACTTATTGCGTTACATTATAAAAAAAAAAAAAAAGAATAAAAATAACCGATTCTATTTTGCCATTTTTGTAGGAAGCAAGAAAGGAGAGTAAACAAGAGCAGCCAGAAAAGGAAGTACCTAAATTCCAGCCCTTCTCTGGGAAAAGGTACTCGCTTAGAGGTTGAATATATATCACG

mRNA sequence

AATCTGATGCTTAAACGATCAAGCCGATCAAACGGTCTCCTTCTCCCTCTCTGCGCTTCCTCCAGCGACCGATCGTTCATCGGCGACTTGCTTCTCCGTTGTTCGTCTCCGTATTTTGATGGGTATGATGGGTATGGTTATCGTGGAGCATCATTTGAGCAAAGATATCAATGCTTCTCTGCATCATTTATTGATAAGCCACACATTGAAACTGGAGATAGAATTATAATGCCTCCATCAGCCCTTGATCGCCTTGCTTCATTACAAATTGATTATCCAATGTTATTTGAGCTTCGAAATGATGATGCTGAGCGAGTCTCTCATTGTGGGGTATTGGAGTTTGTTGCAGAAGAAGGCAGGATTTACATGCCTTATTGGATGATGGAGAACATGCTTTTACAAGAAGGAGACCTCTTGCATGTGAAGAATGTCACTCTTCCAAAGGGAACTTATGTTAAATTACAACCTCACACAAAGGACTTCTTGGATATCTCCAATCCAAAAGCAATCTTAGAGACTACACTCAGGAATTTTTCTTGCCTCACCACTGGGGGCAGTATTATGGTGGCATATAACAACAAGAAATATTACATTGACATAGTCGAAACAAAGCCATCCAATGCAATAAGTATCATTGAGACAGATTGTGAGGTGGATTTTGCACCTCCCCTGGATTACAAGGAACCAGAGAAGCCTACTGCACCAATCAGGGGGAGGGAGCAAGTTGCAGAAGCTCCAGCAGAAGAAGCTGAACCTAAATTTAGTGCTTTCACGGGAACAGGAAGACGTTTGGATGGTAAATCTTCAAGTCACCAGTCCCAGCCTATTTCATCTGCTAGGTCATCTGAGGAGAAGCTATCCGGTGCTGCTAGTAGATATGGCCCTTCACAACAGTCTGCTGGATCTAGCTCAGTCAATGGAACTCGTCAGGCTCAGGGAAAGTTGGTATTTGGACAAAATGCTAATCAAAATCCTAAAGGAACTTCAAAGGAAGCAAGAAAGGAGAGTAAACAAGAGCAGCCAGAAAAGGAAGTACCTAAATTCCAGCCCTTCTCTGGGAAAAGGTACTCGCTTAGAGGTTGAATATATATCACG

Coding sequence (CDS)

ATGCTTAAACGATCAAGCCGATCAAACGGTCTCCTTCTCCCTCTCTGCGCTTCCTCCAGCGACCGATCGTTCATCGGCGACTTGCTTCTCCGTTGTTCGTCTCCGTATTTTGATGGGTATGATGGGTATGGTTATCGTGGAGCATCATTTGAGCAAAGATATCAATGCTTCTCTGCATCATTTATTGATAAGCCACACATTGAAACTGGAGATAGAATTATAATGCCTCCATCAGCCCTTGATCGCCTTGCTTCATTACAAATTGATTATCCAATGTTATTTGAGCTTCGAAATGATGATGCTGAGCGAGTCTCTCATTGTGGGGTATTGGAGTTTGTTGCAGAAGAAGGCAGGATTTACATGCCTTATTGGATGATGGAGAACATGCTTTTACAAGAAGGAGACCTCTTGCATGTGAAGAATGTCACTCTTCCAAAGGGAACTTATGTTAAATTACAACCTCACACAAAGGACTTCTTGGATATCTCCAATCCAAAAGCAATCTTAGAGACTACACTCAGGAATTTTTCTTGCCTCACCACTGGGGGCAGTATTATGGTGGCATATAACAACAAGAAATATTACATTGACATAGTCGAAACAAAGCCATCCAATGCAATAAGTATCATTGAGACAGATTGTGAGGTGGATTTTGCACCTCCCCTGGATTACAAGGAACCAGAGAAGCCTACTGCACCAATCAGGGGGAGGGAGCAAGTTGCAGAAGCTCCAGCAGAAGAAGCTGAACCTAAATTTAGTGCTTTCACGGGAACAGGAAGACGTTTGGATGGTAAATCTTCAAGTCACCAGTCCCAGCCTATTTCATCTGCTAGGTCATCTGAGGAGAAGCTATCCGGTGCTGCTAGTAGATATGGCCCTTCACAACAGTCTGCTGGATCTAGCTCAGTCAATGGAACTCGTCAGGCTCAGGGAAAGTTGGTATTTGGACAAAATGCTAATCAAAATCCTAAAGGAACTTCAAAGGAAGCAAGAAAGGAGAGTAAACAAGAGCAGCCAGAAAAGGAAGTACCTAAATTCCAGCCCTTCTCTGGGAAAAGGTACTCGCTTAGAGGTTGA

Protein sequence

MLKRSSRSNGLLLPLCASSSDRSFIGDLLLRCSSPYFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSKEARKESKQEQPEKEVPKFQPFSGKRYSLRG

Homology

[Close]

BLAST of Carg22930 vs. NCBI nr
Match: XP_022933860.1 (ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 605.1 bits (1559), Expect = 1.5e-169
Identity = 306/323 (94.74%), Postives = 306/323 (94.74%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 95
           YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE
Sbjct: 2   YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 61

Query: 96  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 155
           LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH
Sbjct: 62  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 121

Query: 156 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 215
           TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE
Sbjct: 122 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 181

Query: 216 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 275
           VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS
Sbjct: 182 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 241

Query: 276 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXX 335
           SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKG          
Sbjct: 242 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSKEATMESK 301

Query: 336 XXXXXXXVPKFQPFSGKRYSLRG 359
                  VPKFQPFSGKRYSLRG
Sbjct: 302 QEQPEKEVPKFQPFSGKRYSLRG 324

[Close]

BLAST of Carg22930 vs. NCBI nr
Match: XP_023530649.1 (ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 599.7 bits (1545), Expect = 6.3e-168
Identity = 303/323 (93.81%), Postives = 304/323 (94.12%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 95
           YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE
Sbjct: 2   YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 61

Query: 96  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 155
           LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH
Sbjct: 62  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 121

Query: 156 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 215
           TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE
Sbjct: 122 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 181

Query: 216 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 275
           VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS
Sbjct: 182 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 241

Query: 276 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXX 335
           SARSSEEKLSGA SR+GP QQSAGSSSVNGTRQAQGKLVFGQNANQNPKG          
Sbjct: 242 SARSSEEKLSGATSRHGPPQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSKEATKETE 301

Query: 336 XXXXXXXVPKFQPFSGKRYSLRG 359
                  VPKFQPFSGKRYSLRG
Sbjct: 302 QEQPEKEVPKFQPFSGKRYSLRG 324

[Close]

BLAST of Carg22930 vs. NCBI nr
Match: XP_022933861.1 (ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 597.0 bits (1538), Expect = 4.1e-167
Identity = 304/323 (94.12%), Postives = 304/323 (94.12%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 95
           YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE
Sbjct: 2   YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 61

Query: 96  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 155
           LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH
Sbjct: 62  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 121

Query: 156 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 215
           TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE
Sbjct: 122 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 181

Query: 216 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 275
           VDFAPPLDYKEPEKPTAPIRGREQ  EAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS
Sbjct: 182 VDFAPPLDYKEPEKPTAPIRGREQ--EAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 241

Query: 276 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXX 335
           SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKG          
Sbjct: 242 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSKEATMESK 301

Query: 336 XXXXXXXVPKFQPFSGKRYSLRG 359
                  VPKFQPFSGKRYSLRG
Sbjct: 302 QEQPEKEVPKFQPFSGKRYSLRG 322

[Close]

BLAST of Carg22930 vs. NCBI nr
Match: XP_022971130.1 (ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 595.9 bits (1535), Expect = 9.1e-167
Identity = 314/323 (97.21%), Postives = 316/323 (97.83%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 95
           YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE
Sbjct: 2   YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 61

Query: 96  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 155
           LRNDD ERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH
Sbjct: 62  LRNDDTERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 121

Query: 156 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 215
           TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE
Sbjct: 122 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 181

Query: 216 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 275
           VDFAPPLDYKEPEKPTAPIRGREQVAEA AEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS
Sbjct: 182 VDFAPPLDYKEPEKPTAPIRGREQVAEAQAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 241

Query: 276 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXX 335
           SA+SSEEKLSGA SR+GPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKG  XXXXXXXX
Sbjct: 242 SAKSSEEKLSGATSRHGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSXXXXXXXX 301

Query: 336 XXXXXXXVPKFQPFSGKRYSLRG 359
           XXXXX  VPKFQPFSGKRYSLRG
Sbjct: 302 XXXXXKEVPKFQPFSGKRYSLRG 324

[Close]

BLAST of Carg22930 vs. NCBI nr
Match: XP_023530650.1 (ubiquitin recognition factor in ER-associated degradation protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 591.7 bits (1524), Expect = 1.7e-165
Identity = 301/323 (93.19%), Postives = 302/323 (93.50%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 95
           YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE
Sbjct: 2   YFDGYDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFE 61

Query: 96  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 155
           LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH
Sbjct: 62  LRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPH 121

Query: 156 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 215
           TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE
Sbjct: 122 TKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCE 181

Query: 216 VDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 275
           VDFAPPLDYKEPEKPTAPIRGREQ  EAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS
Sbjct: 182 VDFAPPLDYKEPEKPTAPIRGREQ--EAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPIS 241

Query: 276 SARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXX 335
           SARSSEEKLSGA SR+GP QQSAGSSSVNGTRQAQGKLVFGQNANQNPKG          
Sbjct: 242 SARSSEEKLSGATSRHGPPQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGTSKEATKETE 301

Query: 336 XXXXXXXVPKFQPFSGKRYSLRG 359
                  VPKFQPFSGKRYSLRG
Sbjct: 302 QEQPEKEVPKFQPFSGKRYSLRG 322

[Close]

BLAST of Carg22930 vs. TAIR10
Match: AT2G21270.3 (ubiquitin fusion degradation 1)

HSP 1 Score: 408.3 bits (1048), Expect = 4.9e-114
Identity = 228/323 (70.59%), Postives = 262/323 (81.11%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGY Y G +FEQ Y+C+ ASFIDKP +E+GD+IIMPPSALDRLASL IDYPMLFELRN 
Sbjct: 24  FDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNA 83

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             ERV+HCGVLEF+AEEG IYMPYWMM+N+LLQEGD++ V+NVTLPKGTYVKLQPHT DF
Sbjct: 84  GIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTDF 143

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDISNPKAILET LRN+SCLT+G SIMV YNNKKY+IDIVETKP+NAISIIETDCEVDFA
Sbjct: 144 LDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFA 203

Query: 220 PPLDYKEPEKPTAPIRGREQV-AEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSAR 279
           PPLDYKEPE+PTAP   +    AE   +E EPKF+ FTG+GRRLDG+  +++  P SS++
Sbjct: 204 PPLDYKEPERPTAPSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPASSSK 263

Query: 280 SSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPK---GXXXXXXXXXX 339
             +  ++      G  Q S  SSS   TR AQGKLVFG N N+ PK    XXXXXXXXXX
Sbjct: 264 GKQPVVAN-----GNGQSSVASSSEKATR-AQGKLVFGANGNRAPKEAXXXXXXXXXXXX 323

Query: 340 XXXXXXXVPKFQPFSGKRYSLRG 359
           XXXXXXX PKFQ FSGK+YSLRG
Sbjct: 324 XXXXXXXXPKFQAFSGKKYSLRG 340

[Close]

BLAST of Carg22930 vs. TAIR10
Match: AT4G38930.2 (Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 386.3 bits (991), Expect = 2.0e-107
Identity = 203/325 (62.46%), Postives = 233/325 (71.69%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           YDGY Y G +FEQ Y+C+ +SFIDKP IE+GD+IIMPPSALDRLASLQIDYPMLFELRN 
Sbjct: 3   YDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNA 62

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             +  SHCGVLEF+AEEG IY+PYWMM+N+LLQEGD++ V+NVTLPKGTYVKLQPHT DF
Sbjct: 63  STDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDF 122

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDI+NPKAILET LRN+SCLT G SIMV YNNKKY+IDIVE KPSN ISIIETDCEVDFA
Sbjct: 123 LDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFA 182

Query: 220 PPLDYKEPEKPTAP--IRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSA 279
           PPLDYKEPE+P AP               EAEPKF+ FTG+GRRLDG+  S++ QP    
Sbjct: 183 PPLDYKEPERPVAPAXXXXXXXXXXXXVAEAEPKFNPFTGSGRRLDGRPLSYEPQP---- 242

Query: 280 RSSEEKLSGAASRYG---PSQQSAGSSSVNGTRQAQGKLVFGQNANQNPK-GXXXXXXXX 339
                   GAA+  G   P   S+ S S   T+Q +GKLVFG N  ++ K          
Sbjct: 243 --------GAANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKD 302

Query: 340 XXXXXXXXXVPKFQPFSGKRYSLRG 359
                      KFQ FSGK+YSLRG
Sbjct: 303 RKQEEEAEKEAKFQAFSGKKYSLRG 315

[Close]

BLAST of Carg22930 vs. TAIR10
Match: AT2G29070.2 (Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 337.8 bits (865), Expect = 8.1e-93
Identity = 178/321 (55.45%), Postives = 227/321 (70.72%), Query Frame = 0


Query: 47  GASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVSH 106
           G+SFEQ Y+C+  +FIDK H+E GD+IIMPPSALDRLASL I+YPMLF+L N   E+ SH
Sbjct: 5   GSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64

Query: 107 CGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNPK 166
           CGVLEF A+EG +Y+PYWMM+NM L+EGD++ VKN++L KGTY+KLQPHT+DFLDISNPK
Sbjct: 65  CGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPK 124

Query: 167 AILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKE 226
           AILETTLR++SCLTTG +IMV YNNK+YYI++VE KPS+A+SIIETDCEVDFAPPLDYKE
Sbjct: 125 AILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKE 184

Query: 227 PEKP-------TAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARS 286
           PEKP         P++ +E+  E PA +  PKF+ FTG+G+RLDGK+ + Q++P  + + 
Sbjct: 185 PEKPQKLTPSNKRPLQVKEE--EEPASKV-PKFTPFTGSGKRLDGKAQT-QTEPEDTKQQ 244

Query: 287 SEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPK--GXXXXXXXXXXXX 346
            +   +G         +     SV   RQ  GKLVFG N+    K               
Sbjct: 245 EKPTENG---------KDDEKLSVTTPRQISGKLVFGSNSKSAAKETAKVDDPKNIVQES 304

Query: 347 XXXXXVPKFQPFSGKRYSLRG 359
                  KF+ F+GK+YSL G
Sbjct: 305 STKSDEAKFKVFTGKKYSLNG 312

[Close]

BLAST of Carg22930 vs. TAIR10
Match: AT4G15420.1 (Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-24
Identity = 65/184 (35.33%), Postives = 98/184 (53.26%), Query Frame = 0


Query: 47  GASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQI--DYPMLFELR---NDDA 106
           G  FE+ +Q  S           GD+I +PPS    L+        P+ FEL    + D 
Sbjct: 75  GIVFERVFQAVSFQ-------GNGDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADN 134

Query: 107 ERVSHCGVLEFVAEEGRIYMPYWMMENMLL----QEGDLLHVKNVTLPKGTYVKLQPHTK 166
           ++ +H GVLEF AE+G I +P  +  N+       +  L+ ++ + LPKG+Y KLQP   
Sbjct: 135 KKTTHSGVLEFTAEDGTIGLPPHVWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNL 194

Query: 167 DFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVD 222
            F D+ N KAILET LR  + L+    ++V Y    Y + ++E +P+ +IS++ETD EVD
Sbjct: 195 GFSDLPNHKAILETILRQHATLSLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVD 251

[Close]

BLAST of Carg22930 vs. Swiss-Prot
Match: sp|P70362|UFD1_MOUSE (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 8.4e-63
Identity = 119/228 (52.19%), Postives = 156/228 (68.42%), Query Frame = 0


Query: 50  FEQRYQCFSASFI----DKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVS 109
           F  +Y+CFS S +    D+  +E G +IIMPPSALD+L+ L I YPMLF+L N +++R++
Sbjct: 19  FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78

Query: 110 HCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNP 169
           HCGVLEFVA+EG  Y+P+WMM+N+LL+EG L+ V++V L   TY K QP + DFLDI+NP
Sbjct: 79  HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138

Query: 170 KAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYK 229
           KA+LE  LRNF+CLTTG  I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198

Query: 230 EPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQP 274
           EPE+P       E  A+      E  F AF+G+G RLDGK    +  P
Sbjct: 199 EPERPVQHEESIEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSP 246

[Close]

BLAST of Carg22930 vs. Swiss-Prot
Match: sp|Q9ES53|UFD1_RAT (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus norvegicus OX=10116 GN=Ufd1 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 8.4e-63
Identity = 119/228 (52.19%), Postives = 156/228 (68.42%), Query Frame = 0


Query: 50  FEQRYQCFSASFI----DKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVS 109
           F  +Y+CFS S +    D+  +E G +IIMPPSALD+L+ L I YPMLF+L N +++R++
Sbjct: 19  FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78

Query: 110 HCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNP 169
           HCGVLEFVA+EG  Y+P+WMM+N+LL+EG L+ V++V L   TY K QP + DFLDI+NP
Sbjct: 79  HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138

Query: 170 KAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYK 229
           KA+LE  LRNF+CLTTG  I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198

Query: 230 EPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQP 274
           EPE+P       E  A+      E  F AF+G+G RLDGK    +  P
Sbjct: 199 EPERPVQHEESIEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSP 246

[Close]

BLAST of Carg22930 vs. Swiss-Prot
Match: sp|Q92890|UFD1_HUMAN (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3)

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-62
Identity = 118/228 (51.75%), Postives = 155/228 (67.98%), Query Frame = 0


Query: 50  FEQRYQCFSASFI----DKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVS 109
           F  +Y+CFS S +    D+  +E G +IIMPPSALD+L+ L I YPMLF+L N +++R++
Sbjct: 19  FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78

Query: 110 HCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNP 169
           HCGVLEFVA+EG  Y+P+WMM+N+LL+EG L+ V++V L   TY K QP + DFLDI+NP
Sbjct: 79  HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138

Query: 170 KAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYK 229
           KA+LE  LRNF+CLTTG  I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YK
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198

Query: 230 EPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQP 274
           EPE+        E  A+      E  F AF+G+G RLDGK    +  P
Sbjct: 199 EPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSP 246

[Close]

BLAST of Carg22930 vs. Swiss-Prot
Match: sp|Q9VTF9|UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=Ufd1-like PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 7.3e-59
Identity = 115/241 (47.72%), Postives = 158/241 (65.56%), Query Frame = 0


Query: 36  YFDGYDGYGYRGASFEQRYQCFSASFI---DKPHIETGDRIIMPPSALDRLASLQIDYPM 95
           +F G++     G +F   Y+CFS S +   ++  +E G +IIMPPSALD L  L ++YPM
Sbjct: 3   HFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPM 62

Query: 96  LFELRNDDAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKL 155
           LF+L N    R SH GVLEFVA+EG+ Y+P+WMMEN+LL EGD+L++++V+LP  T+ K 
Sbjct: 63  LFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKF 122

Query: 156 QPHTKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIET 215
           QPH+ DFLDI+NPKA+LE  LRNF+CLT G  I + YN K Y + ++ETKP NA+SIIE 
Sbjct: 123 QPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIEC 182

Query: 216 DCEVDFAPPLDYKEPEKPTAPIRGRE--------QVAEAPAEEAEPKFSAFTGTGRRLDG 266
           D  V+F  P+ YK+  +  A   G++        ++A A     E     F G+G RLDG
Sbjct: 183 DMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDG 242

[Close]

BLAST of Carg22930 vs. Swiss-Prot
Match: sp|Q55BK0|UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.0e-57
Identity = 103/189 (54.50%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 50  FEQRYQCFSASFI--DKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRNDDAERVSHC 109
           +EQ+++ F  SF+  +K  +E+G +I++PPSAL+ L+ L I YPMLFE+ N  + + SHC
Sbjct: 25  YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHC 84

Query: 110 GVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDFLDISNPKA 169
           GVLEF+AEEG  Y+P WMM+N+ L+EG+ + +KN TL KGT+VK+QP T +F+DISNPKA
Sbjct: 85  GVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKA 144

Query: 170 ILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKEP 229
           +LE +LR F+ LT    IM+ YNN KYY+ +VE KP+NAISIIE D  VDFAPP+D KE 
Sbjct: 145 VLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEA 204

Query: 230 EKPTAPIRG 237
             P+    G
Sbjct: 205 TSPSTSSPG 213

[Close]

BLAST of Carg22930 vs. TrEMBL
Match: tr|A0A0A0K0F7|A0A0A0K0F7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006300 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 4.8e-132
Identity = 265/320 (82.81%), Postives = 277/320 (86.56%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGYGYRG SFEQ YQCFS SFIDKPH+ETGDRIIMPPSALDRLASLQIDYPMLFELRND
Sbjct: 130 FDGYGYRGTSFEQSYQCFSTSFIDKPHLETGDRIIMPPSALDRLASLQIDYPMLFELRND 189

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             ERVSHCGVLEFVAEEG IYMPYWMMENM+LQEGDL+ VKNVTLPKGTYVKLQPHTKDF
Sbjct: 190 AVERVSHCGVLEFVAEEGMIYMPYWMMENMVLQEGDLVRVKNVTLPKGTYVKLQPHTKDF 249

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDISNPKAILETTLRNFSCLTTG SIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA
Sbjct: 250 LDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 309

Query: 220 PPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARS 279
           PPLDYKEPEK  AP +G+EQVAEAP  EAEPKFSAFTGTGRRLDGKSS+HQ QPISS+RS
Sbjct: 310 PPLDYKEPEKLVAPTKGKEQVAEAPDSEAEPKFSAFTGTGRRLDGKSSNHQPQPISSSRS 369

Query: 280 SEEK-LSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXXXXX 339
           ++ K                   SVNG RQ+QGKLVFGQNAN     XXXXXXXXXXXXX
Sbjct: 370 ADAKXXXXXXXXXXXXXXXXXXXSVNGIRQSQGKLVFGQNANXXXXXXXXXXXXXXXXXX 429

Query: 340 XXXXVPKFQPFSGKRYSLRG 359
           XXXX   FQPF+GKRYSLRG
Sbjct: 430 XXXXXXXFQPFAGKRYSLRG 449

[Close]

BLAST of Carg22930 vs. TrEMBL
Match: tr|A0A1S3BAT8|A0A1S3BAT8_CUCME (ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488062 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 2.5e-128
Identity = 258/319 (80.88%), Postives = 268/319 (84.01%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGYGYRG SFEQ YQCFS SFIDKPH+ETGDRIIMPPSALDRLASLQIDYPMLFELRND
Sbjct: 3   FDGYGYRGTSFEQSYQCFSTSFIDKPHLETGDRIIMPPSALDRLASLQIDYPMLFELRND 62

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             ERVSHCGVLEFVAEEG IYMPYWMMENMLLQEGDL+ VKNV LPKGTYVKLQPHTKDF
Sbjct: 63  AVERVSHCGVLEFVAEEGMIYMPYWMMENMLLQEGDLVRVKNVPLPKGTYVKLQPHTKDF 122

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDISNPKAILETTLRNFSCLTTG SIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA
Sbjct: 123 LDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 182

Query: 220 PPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARS 279
           PPLDYKEPEKP AP +G+EQVAEAP  EAEPKFSAFTGTGRRLDGKSS+HQ QPISS+RS
Sbjct: 183 PPLDYKEPEKPVAPTKGKEQVAEAPDAEAEPKFSAFTGTGRRLDGKSSNHQPQPISSSRS 242

Query: 280 SEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXXXXXX 339
            +                               LVFGQNAN+    XXXXXXXXXXXXXX
Sbjct: 243 GDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFGQNANRXXXXXXXXXXXXXXXXXX 302

Query: 340 XXXVPKFQPFSGKRYSLRG 359
           XXX PKFQPF+GKRYSLRG
Sbjct: 303 XXXDPKFQPFTGKRYSLRG 321

[Close]

BLAST of Carg22930 vs. TrEMBL
Match: tr|A0A1S3BJQ5|A0A1S3BJQ5_CUCME (ubiquitin fusion degradation protein 1 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490342 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 3.2e-128
Identity = 258/319 (80.88%), Postives = 268/319 (84.01%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGYGYRG SFEQ YQCFS SFIDKPH+ETGDRIIMPPSALDRLASLQIDYPMLFELRND
Sbjct: 3   FDGYGYRGTSFEQSYQCFSTSFIDKPHLETGDRIIMPPSALDRLASLQIDYPMLFELRND 62

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             ERVSHCGVLEFVAEEG IYMPYWMMENMLLQEGDL+ VKNV LPKGTYVKLQPHTKDF
Sbjct: 63  AVERVSHCGVLEFVAEEGMIYMPYWMMENMLLQEGDLVRVKNVPLPKGTYVKLQPHTKDF 122

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDISNPKAILETTLRNFSCLTTG SIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA
Sbjct: 123 LDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 182

Query: 220 PPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARS 279
           PPLDYKEPEKP AP +G+EQVAEAP  EAEPKFSAFTGTGRRLDGKSS+HQ QPISS+RS
Sbjct: 183 PPLDYKEPEKPVAPTKGKEQVAEAPDAEAEPKFSAFTGTGRRLDGKSSNHQPQPISSSRS 242

Query: 280 SEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXXXXXX 339
            + K                        Q+QGKLVFGQNAN     XXXXXXXXXXXXXX
Sbjct: 243 GDAKQXXXXXXXXXXXXXXXXXXXXXAHQSQGKLVFGQNANXXXXXXXXXXXXXXXXXXX 302

Query: 340 XXXVPKFQPFSGKRYSLRG 359
           XXX      F+GKRYSLRG
Sbjct: 303 XXXXXXXXXFTGKRYSLRG 321

[Close]

BLAST of Carg22930 vs. TrEMBL
Match: tr|A0A1S4DWZ2|A0A1S4DWZ2_CUCME (ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490342 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.0e-126
Identity = 258/326 (79.14%), Postives = 268/326 (82.21%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGYGYRG SFEQ YQCFS SFIDKPH+ETGDRIIMPPSALDRLASLQIDYPMLFELRND
Sbjct: 3   FDGYGYRGTSFEQSYQCFSTSFIDKPHLETGDRIIMPPSALDRLASLQIDYPMLFELRND 62

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYW-------MMENMLLQEGDLLHVKNVTLPKGTYVKL 159
             ERVSHCGVLEFVAEEG IYMPYW       MMENMLLQEGDL+ VKNV LPKGTYVKL
Sbjct: 63  AVERVSHCGVLEFVAEEGMIYMPYWVDFHISLMMENMLLQEGDLVRVKNVPLPKGTYVKL 122

Query: 160 QPHTKDFLDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIET 219
           QPHTKDFLDISNPKAILETTLRNFSCLTTG SIMVAYNNKKYYIDIVETKPSNAISIIET
Sbjct: 123 QPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIET 182

Query: 220 DCEVDFAPPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQ 279
           DCEVDFAPPLDYKEPEKP AP +G+EQVAEAP  EAEPKFSAFTGTGRRLDGKSS+HQ Q
Sbjct: 183 DCEVDFAPPLDYKEPEKPVAPTKGKEQVAEAPDAEAEPKFSAFTGTGRRLDGKSSNHQPQ 242

Query: 280 PISSARSSEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXX 339
           PISS+RS + K                        Q+QGKLVFGQNAN     XXXXXXX
Sbjct: 243 PISSSRSGDAKQXXXXXXXXXXXXXXXXXXXXXAHQSQGKLVFGQNANXXXXXXXXXXXX 302

Query: 340 XXXXXXXXXXVPKFQPFSGKRYSLRG 359
           XXXXXXXXXX      F+GKRYSLRG
Sbjct: 303 XXXXXXXXXXXXXXXXFTGKRYSLRG 328

[Close]

BLAST of Carg22930 vs. TrEMBL
Match: tr|A0A1S3BC70|A0A1S3BC70_CUCME (ubiquitin fusion degradation protein 1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488062 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 6.8e-126
Identity = 256/319 (80.25%), Postives = 266/319 (83.39%), Query Frame = 0


Query: 40  YDGYGYRGASFEQRYQCFSASFIDKPHIETGDRIIMPPSALDRLASLQIDYPMLFELRND 99
           +DGYGYRG SFEQ YQCFS SFIDKPH+ETGDRIIMPPSALDRLASLQIDYPMLFELRND
Sbjct: 3   FDGYGYRGTSFEQSYQCFSTSFIDKPHLETGDRIIMPPSALDRLASLQIDYPMLFELRND 62

Query: 100 DAERVSHCGVLEFVAEEGRIYMPYWMMENMLLQEGDLLHVKNVTLPKGTYVKLQPHTKDF 159
             ERVSHCGVLEFVAEEG IYMPYWMMENMLLQEGDL+ VKNV LPKGTYVKLQPHTKDF
Sbjct: 63  AVERVSHCGVLEFVAEEGMIYMPYWMMENMLLQEGDLVRVKNVPLPKGTYVKLQPHTKDF 122

Query: 160 LDISNPKAILETTLRNFSCLTTGGSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 219
           LDISNPKAILETTLRNFSCLTTG SIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA
Sbjct: 123 LDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFA 182

Query: 220 PPLDYKEPEKPTAPIRGREQVAEAPAEEAEPKFSAFTGTGRRLDGKSSSHQSQPISSARS 279
           PPLDYKEPEKP AP +G+EQ  EAP  EAEPKFSAFTGTGRRLDGKSS+HQ QPISS+RS
Sbjct: 183 PPLDYKEPEKPVAPTKGKEQ--EAPDAEAEPKFSAFTGTGRRLDGKSSNHQPQPISSSRS 242

Query: 280 SEEKLSGAASRYGPSQQSAGSSSVNGTRQAQGKLVFGQNANQNPKGXXXXXXXXXXXXXX 339
            +                               LVFGQNAN+    XXXXXXXXXXXXXX
Sbjct: 243 GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFGQNANRXXXXXXXXXXXXXXXXXX 302

Query: 340 XXXVPKFQPFSGKRYSLRG 359
           XXX PKFQPF+GKRYSLRG
Sbjct: 303 XXXDPKFQPFTGKRYSLRG 319

The following BLAST results are available for this feature:

BLAST of Carg22930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933860.1	1.5e-169	94.74	ubiquitin recognition factor in ER-associated degradation protein 1-like isoform...	[more]
XP_023530649.1	6.3e-168	93.81	ubiquitin recognition factor in ER-associated degradation protein 1-like isoform...	[more]
XP_022933861.1	4.1e-167	94.12	ubiquitin recognition factor in ER-associated degradation protein 1-like isoform...	[more]
XP_022971130.1	9.1e-167	97.21	ubiquitin recognition factor in ER-associated degradation protein 1-like isoform...	[more]
XP_023530650.1	1.7e-165	93.19	ubiquitin recognition factor in ER-associated degradation protein 1-like isoform...	[more]

BLAST of Carg22930 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21270.3	4.9e-114	70.59	ubiquitin fusion degradation 1	[more]
AT4G38930.2	2.0e-107	62.46	Ubiquitin fusion degradation UFD1 family protein	[more]
AT2G29070.2	8.1e-93	55.45	Ubiquitin fusion degradation UFD1 family protein	[more]
AT4G15420.1	4.7e-24	35.33	Ubiquitin fusion degradation UFD1 family protein	[more]

BLAST of Carg22930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P70362\|UFD1_MOUSE	8.4e-63	52.19	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus muscu...	[more]
sp\|Q9ES53\|UFD1_RAT	8.4e-63	52.19	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus no...	[more]
sp\|Q92890\|UFD1_HUMAN	5.4e-62	51.75	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapi...	[more]
sp\|Q9VTF9\|UFD1_DROME	7.3e-59	47.72	Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster OX=722...	[more]
sp\|Q55BK0\|UFD1_DICDI	4.0e-57	54.50	Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44...	[more]

BLAST of Carg22930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K0F7\|A0A0A0K0F7_CUCSA	4.8e-132	82.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006300 PE=4 SV=1	[more]
tr\|A0A1S3BAT8\|A0A1S3BAT8_CUCME	2.5e-128	80.88	ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=365...	[more]
tr\|A0A1S3BJQ5\|A0A1S3BJQ5_CUCME	3.2e-128	80.88	ubiquitin fusion degradation protein 1 homolog isoform X3 OS=Cucumis melo OX=365...	[more]
tr\|A0A1S4DWZ2\|A0A1S4DWZ2_CUCME	4.0e-126	79.14	ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=365...	[more]
tr\|A0A1S3BC70\|A0A1S3BC70_CUCME	6.8e-126	80.25	ubiquitin fusion degradation protein 1 homolog isoform X2 OS=Cucumis melo OX=365...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR004854	Ufd1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22930-RA	Carg22930-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004854	Ubiquitin fusion degradation protein Ufd1-like	PFAM	PF03152	UFD1	coord: 50..221 e-value: 1.1E-77 score: 259.2
IPR004854	Ubiquitin fusion degradation protein Ufd1-like	PANTHER	PTHR12555	UBIQUITIN FUSION DEGRADATON PROTEIN 1	coord: 40..357
None	No IPR available	GENE3D	G3DSA:3.10.330.10		coord: 146..219 e-value: 2.7E-35 score: 122.1
None	No IPR available	GENE3D	G3DSA:2.40.40.50		coord: 41..145 e-value: 1.8E-42 score: 145.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..245
None	No IPR available	PANTHER	PTHR12555:SF16	SUBFAMILY NOT NAMED	coord: 40..357

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22930	Cla015882	Watermelon (97103) v1	carwmB0203
Carg22930	Csa7G006300	Cucumber (Chinese Long) v2	carcuB0240
Carg22930	MELO3C013417	Melon (DHL92) v3.5.1	carmeB0218
Carg22930	ClCG02G004530	Watermelon (Charleston Gray)	carwcgB0208
Carg22930	CSPI07G00420	Wild cucumber (PI 183967)	carcpiB0246
Carg22930	CmaCh11G010700	Cucurbita maxima (Rimu)	carcmaB0291
Carg22930	CmaCh19G006980	Cucurbita maxima (Rimu)	carcmaB0293
Carg22930	CmoCh11G010930	Cucurbita moschata (Rifu)	carcmoB0297
Carg22930	CmoCh19G007070	Cucurbita moschata (Rifu)	carcmoB0299
Carg22930	Lsi11G011420	Bottle gourd (USVL1VR-Ls)	carlsiB189
Carg22930	Cp4.1LG04g01220	Cucurbita pepo (Zucchini)	carcpeB0302
Carg22930	Cp4.1LG15g05720	Cucurbita pepo (Zucchini)	carcpeB0300
Carg22930	CsGy7G000360	Cucumber (Gy14) v2	carcgybB0229
Carg22930	MELO3C013417.2	Melon (DHL92) v3.6.1	carmedB0224
Carg22930	CsaV3_7G000420	Cucumber (Chinese Long) v3	carcucB0244
Carg22930	Cla97C02G031500	Watermelon (97103) v2	carwmbB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None