Carg22777 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22777
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Furry
Location	Cucurbita_argyrosperma_scaffold_224 : 210358 .. 210738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

mRNA sequence

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

Coding sequence (CDS)

ATGGCCAAAGCTTCCTCCTCCCTCTTCCAAACCCTAAAGCGCTTCATCAAGAAGCCATGGGAGATCACCGGCCCTTGTGCAGATCCAGAGTACAGATCTGCCGTCCCCAGCGCCTTAGAGTACAGGGTCTTTTGCCCCGCCACTACTAAGCAGAAACCCATTGTCCCCACCTCCAATCCCCAAACCGTCTTCGACATTAAGTATTACAGCCGCGACCAGCGTCGCAATCGCCCTCCAATTCGACGCATTATCCTCAAGAAACCTGACATCGAGCAGATGATGAAGGAGACTAAGTTCGACCCTGCCGACTTCCCCAAAGTTTATCTTACTGCCGCAATCGAGGAGGATATTAATGCCCGTGGAGGTGGTTATCAGAAGTAG

Protein sequence

MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK

Homology

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_022954424.1 (uncharacterized protein LOC111456682 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 2.4e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 63  MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 122

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 123 QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 182

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 183 GGGYQK 188

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_023541320.1 (uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 1.0e-64
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSSLFQT+KR+IKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP
Sbjct: 23  MAKASSSLFQTVKRYIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 82

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIRR ILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 83  ETVFDIKYYSRDQRRNRPPIRRTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 142

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 143 GGGYQK 148

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_023001049.1 (uncharacterized protein LOC111495303 [Cucurbita maxima] >XP_023001050.1 uncharacterized protein LOC111495303 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 5.3e-61
Identity = 114/126 (90.48%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSS FQTLKR+IKKPWEITGPCADPEY+ AVPSA+EYRVFCPA+TK+K IVPTSNP
Sbjct: 1   MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPASTKEKAIVPTSNP 60

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYYSRDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEEDINAR
Sbjct: 61  ETVFDIKYYSRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDINAR 120

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 121 GGGYQK 126

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_022923781.1 (uncharacterized protein LOC111431390, partial [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 9.0e-61
Identity = 113/126 (89.68%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           MAKASSS FQTLKR+IKKPWEITGPCADPEY+ AVPSA+EYRVFCPATTK+K IVPTSNP
Sbjct: 22  MAKASSSFFQTLKRYIKKPWEITGPCADPEYKLAVPSAIEYRVFCPATTKEKAIVPTSNP 81

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINAR 120
           +TVFDIKYY+RDQRRNRPPIRR ILKKPD+E+MMKETKFDPADFPKVYLTAAIEED+NAR
Sbjct: 82  ETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKETKFDPADFPKVYLTAAIEEDMNAR 141

Query: 121 GGGYQK 127
           GGGYQK
Sbjct: 142 GGGYQK 147

[Close]

BLAST of Carg22777 vs. NCBI nr
Match: XP_022994128.1 (uncharacterized protein LOC111489956 [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 2.2e-59
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 8   LFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTVFDIK 67
           LFQTLKR+IKKPWEITGPCAD EYRSAVPSALEYR+FCPATTKQKPIVPTSNP+TVFDIK
Sbjct: 55  LFQTLKRYIKKPWEITGPCADSEYRSAVPSALEYRLFCPATTKQKPIVPTSNPETVFDIK 114

Query: 68  YYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK 127
           YYSRDQRRNRPPIR  ILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK
Sbjct: 115 YYSRDQRRNRPPIRCTILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGGYQK 173

[Close]

BLAST of Carg22777 vs. TAIR10
Match: AT5G08060.1 (unknown protein)

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-43
Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 1   MAKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNP 60
           ++ A+SSL Q L+R+IKKPW+ITGPCA PEY  AVP A EYR+ CPAT  ++ IVP+S+P
Sbjct: 5   VSTAASSLVQNLRRYIKKPWQITGPCAHPEYLEAVPKATEYRLRCPATIDEEAIVPSSDP 64

Query: 61  QTVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETK-FDPADFPKVYLTAAIEEDINA 120
           +TV++I Y+ RDQRRNRPPIRR +L K ++ QMM E K FD +DFPKVYLT  +EED++ 
Sbjct: 65  ETVYNIVYHGRDQRRNRPPIRRYVLTKDNVVQMMNEKKSFDVSDFPKVYLTTTVEEDLDT 124

Query: 121 RGGGYQK 127
           RGGGY+K
Sbjct: 125 RGGGYEK 131

[Close]

BLAST of Carg22777 vs. TrEMBL
Match: tr|W9RRE2|W9RRE2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019074 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.8e-53
Identity = 99/123 (80.49%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 4   ASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTV 63
           A++SLFQ+LKRF KKPWEITGPCADPEYRSA+P ALEYR+ CPATTK KP VPTSNP+TV
Sbjct: 8   ATTSLFQSLKRFFKKPWEITGPCADPEYRSALPGALEYRLSCPATTKLKPSVPTSNPETV 67

Query: 64  FDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGG 123
           +DIKYY+RDQRRNRPPIRR +LKK D+E+M KET FD ADFP+VYLTAA+EED NARGGG
Sbjct: 68  YDIKYYTRDQRRNRPPIRRTVLKKADVERMKKETTFDIADFPRVYLTAAVEEDYNARGGG 127

Query: 124 YQK 127
           YQK
Sbjct: 128 YQK 130

[Close]

BLAST of Carg22777 vs. TrEMBL
Match: tr|A0A200QVX8|A0A200QVX8_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1813g44 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-52
Identity = 97/124 (78.23%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 2   AKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQ 61
           +  + S+FQ+LKRF KKPWEITGPCADPEY+SA+P ALEYR++CPATTK K I+PTSNP+
Sbjct: 7   SSGAKSVFQSLKRFFKKPWEITGPCADPEYKSALPGALEYRIYCPATTKAKAIIPTSNPE 66

Query: 62  TVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARG 121
           TVFDIKYYSRDQRRNRPPIRR ILKK D+E+MMKE  FD +DFPKVYLTAA+EED NARG
Sbjct: 67  TVFDIKYYSRDQRRNRPPIRRTILKKADVEKMMKEKTFDQSDFPKVYLTAAVEEDYNARG 126

Query: 122 GGYQ 126
           GGYQ
Sbjct: 127 GGYQ 130

[Close]

BLAST of Carg22777 vs. TrEMBL
Match: tr|A0A067KGH4|A0A067KGH4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11736 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 4   ASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTV 63
           A+SSL QTLKRFIKKPWEITGPCADPEYRSA+PS LEYRV CPAT K KPIVPTS+P+TV
Sbjct: 8   AASSLLQTLKRFIKKPWEITGPCADPEYRSAIPSPLEYRVHCPATPKIKPIVPTSDPETV 67

Query: 64  FDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGG 123
           +DIKYY+RDQRRNRPPI+R ILKK D+E+MMKET FD A+FP VYLTA +EED NARGGG
Sbjct: 68  YDIKYYTRDQRRNRPPIKRTILKKADVEKMMKETTFDVANFPPVYLTATVEEDYNARGGG 127

Query: 124 YQK 127
           YQK
Sbjct: 128 YQK 130

[Close]

BLAST of Carg22777 vs. TrEMBL
Match: tr|A0A2C9VP62|A0A2C9VP62_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G083500 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 4   ASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQTV 63
           A+SSLFQTLKRFIKKPWEITGPCADPEYRSAVP ALEYRV CPAT K K IVPTSNP+TV
Sbjct: 8   ATSSLFQTLKRFIKKPWEITGPCADPEYRSAVPGALEYRVHCPATPKIKAIVPTSNPETV 67

Query: 64  FDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARGGG 123
           +DIKYY+RDQRRNRPPI+R ILKK D+E+MMKE  FD  DFP VYLTA +EED NARGGG
Sbjct: 68  YDIKYYTRDQRRNRPPIKRTILKKADVEKMMKEKTFDVTDFPPVYLTAKVEEDYNARGGG 127

Query: 124 YQK 127
           YQK
Sbjct: 128 YQK 130

[Close]

BLAST of Carg22777 vs. TrEMBL
Match: tr|A0A0D2RER4|A0A0D2RER4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G101800 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 2   AKASSSLFQTLKRFIKKPWEITGPCADPEYRSAVPSALEYRVFCPATTKQKPIVPTSNPQ 61
           +KASSSLFQ+L+R+IKKPWEITGPCADPEY++AVP A EYRV CPATT QKPIVPTS+P+
Sbjct: 3   SKASSSLFQSLRRYIKKPWEITGPCADPEYKNAVPKATEYRVRCPATTLQKPIVPTSDPE 62

Query: 62  TVFDIKYYSRDQRRNRPPIRRIILKKPDIEQMMKETKFDPADFPKVYLTAAIEEDINARG 121
           TVFDIKYYSRDQRRNRPPIRR ILKK D+ +MMKE  FD  DFPKVYLTA +EED NA G
Sbjct: 63  TVFDIKYYSRDQRRNRPPIRRTILKKDDVVKMMKEKTFDVNDFPKVYLTAKVEEDENAVG 122

Query: 122 GGYQK 127
           GGYQK
Sbjct: 123 GGYQK 127

The following BLAST results are available for this feature:

BLAST of Carg22777 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954424.1	2.4e-66	100.00	uncharacterized protein LOC111456682 [Cucurbita moschata]	[more]
XP_023541320.1	1.0e-64	96.83	uncharacterized protein LOC111801530, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023001049.1	5.3e-61	90.48	uncharacterized protein LOC111495303 [Cucurbita maxima] >XP_023001050.1 uncharac...	[more]
XP_022923781.1	9.0e-61	89.68	uncharacterized protein LOC111431390, partial [Cucurbita moschata]	[more]
XP_022994128.1	2.2e-59	94.96	uncharacterized protein LOC111489956 [Cucurbita maxima]	[more]

BLAST of Carg22777 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08060.1	2.1e-43	62.20	unknown protein	[more]

BLAST of Carg22777 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22777 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9RRE2\|W9RRE2_9ROSA	7.8e-53	80.49	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019074 PE=4 SV=1	[more]
tr\|A0A200QVX8\|A0A200QVX8_9MAGN	1.0e-52	78.23	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1813g44 PE=4 SV=1	[more]
tr\|A0A067KGH4\|A0A067KGH4_JATCU	1.7e-52	81.30	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11736 PE=4 SV=1	[more]
tr\|A0A2C9VP62\|A0A2C9VP62_MANES	2.3e-52	82.11	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G083500 PE=4 SV=...	[more]
tr\|A0A0D2RER4\|A0A0D2RER4_GOSRA	1.9e-51	80.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G101800 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22777-RA	Carg22777-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36391	FAMILY NOT NAMED	coord: 3..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22777	CmaCh18G000100	Cucurbita maxima (Rimu)	carcmaB0722
Carg22777	Cp4.1LG09g11550	Cucurbita pepo (Zucchini)	carcpeB0722

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22777	Wild cucumber (PI 183967)	carcpiB0549
Carg22777	Wild cucumber (PI 183967)	carcpiB0550
Carg22777	Cucumber (Chinese Long) v2	carcuB0542
Carg22777	Cucumber (Chinese Long) v2	carcuB0543
Carg22777	Cucumber (Chinese Long) v3	carcucB0548
Carg22777	Cucumber (Chinese Long) v3	carcucB0549
Carg22777	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22777	Melon (DHL92) v3.5.1	carmeB0516
Carg22777	Melon (DHL92) v3.6.1	carmedB0522
Carg22777	Watermelon (Charleston Gray)	carwcgB0498
Carg22777	Watermelon (97103) v1	carwmB0509
Carg22777	Watermelon (97103) v2	carwmbB0536
Carg22777	Silver-seed gourd	carcarB413
Carg22777	Silver-seed gourd	carcarB496
Carg22777	Cucumber (Gy14) v2	carcgybB0518
Carg22777	Cucumber (Gy14) v2	carcgybB0519
Carg22777	Cucumber (Gy14) v1	carcgyB0588
Carg22777	Cucumber (Gy14) v1	carcgyB0590
Carg22777	Cucurbita maxima (Rimu)	carcmaB0720
Carg22777	Cucurbita maxima (Rimu)	carcmaB0721
Carg22777	Cucurbita moschata (Rifu)	carcmoB0698
Carg22777	Cucurbita moschata (Rifu)	carcmoB0699
Carg22777	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22777	Cucurbita pepo (Zucchini)	carcpeB0726