Carg22771 (gene) Silver-seed gourd

Overview
NameCarg22771
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_224 : 182659 .. 183728 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTATTGGCATTGTGGTTGGGGTTGAAGTGAAATATCAGTCTGGTTCCTTATCTGTAGATGAAGAAACTTGACTGTTAACATAACAAACCAAAAGGAAGTCGGTCAAAGACAGCTAAAAGTCATTGTGTTTTAAATGCTAGTATGTTCTATTACTTTTGGTTCTAGCTAAAGGAAATCTGGAAGCTAAAAAGCATGAAGCCCAATCTCTGACTCGCCATCTCACCAGCCGTGTCACTGTCCATGGAGTGGACATTTCTGTGTCTTTTTCTATTGTCCAATGTTTTCTCCTTTTCGCTCTTCTATTGTAAACCAGTTTTTCTGAGAGAGAAAGAAACTAATCTTTGAATTTGAAAGAGACACCATTACTAGGGGAAGTTACTAATAATGAGGGAGGAGTGAGTCAGTTATGTTCCTAAACATGGAGAACTTCGTCAGTTAAATATGTTGTTAAATGAACAACATTTTCAAAAGTAATTCCTTTCGTTTTTATGAAAGAAATGGTTGTGAGTGGCATGTGATCTAGCAATAGTAGACGTAGAGAAAACACAAAATCATCCAAACATCAGAGAAGAAGAAGACCATTGAAATGCTAATTGAGGTACAGAACAATATATATGTCAGAAATGTAAAAATACCAACCACTAATTCAATTCCATTTCTGATACCTTGTTGGTTGTTGTAGGGCGGAGATGGACGACATGATCCCTTTGAAACTCGACTTTGTATGGTGCTATTCGACAGAGGAAGCTTCAAAAGAACAATGCAGGCAGGTTTGGATTGACATTATATACTTGATTTGTTCAGGCTTAGTTGTTTTATTTGATGGATGATTGATGACAATAATGAAAATTAAAGACGTAACTGCAATGCATAATAAAACCGCCCACAATTATTGCACAAAACTAAGGCATTTCAAATTTTAAATTTTTAAAAACACAAACCATGTATTAATGGATTTTGGCCATGGGTTGTGTTTTGTTTCCTCTTTTTTAACGTAGAAGGAGAAAATTTCGGCGGGATTTATGATGGGTGGGGAGTTGCTGGGACTGCGATTGTGGCATAA

mRNA sequence

ATGGCTCTTATTGGCATTGTGGTTGGGGTTGAAGTGAAATATCAGTCTGCTAAAGGAAATCTGGAAGCTAAAAAGCATGAAGCCCAATCTCTGACTCGCCATCTCACCAGCCGTGTCACTGTCCATGGAGTGGACATTTCTGGCGGAGATGGACGACATGATCCCTTTGAAACTCGACTTTGTATGGTGCTATTCGACAGAGGAAGCTTCAAAAGAACAATGCAGGCAGAAGGAGAAAATTTCGGCGGGATTTATGATGGGTGGGGAGTTGCTGGGACTGCGATTGTGGCATAA

Coding sequence (CDS)

ATGGCTCTTATTGGCATTGTGGTTGGGGTTGAAGTGAAATATCAGTCTGCTAAAGGAAATCTGGAAGCTAAAAAGCATGAAGCCCAATCTCTGACTCGCCATCTCACCAGCCGTGTCACTGTCCATGGAGTGGACATTTCTGGCGGAGATGGACGACATGATCCCTTTGAAACTCGACTTTGTATGGTGCTATTCGACAGAGGAAGCTTCAAAAGAACAATGCAGGCAGAAGGAGAAAATTTCGGCGGGATTTATGATGGGTGGGGAGTTGCTGGGACTGCGATTGTGGCATAA

Protein sequence

MALIGIVVGVEVKYQSAKGNLEAKKHEAQSLTRHLTSRVTVHGVDISGGDGRHDPFETRLCMVLFDRGSFKRTMQAEGENFGGIYDGWGVAGTAIVA
Homology
[Close]
BLAST of Carg22771 vs. NCBI nr
Match: XP_022955277.1 (ADP,ATP carrier protein ER-ANT1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 46 ISGGDGRHDPFETRLCMVLFDRGSFKRTMQ 76
          I GGDGRHDPFETRLCMVLFDRGSFKRTMQ
Sbjct: 3  IEGGDGRHDPFETRLCMVLFDRGSFKRTMQ 32

The following BLAST results are available for this feature:
BLAST of Carg22771 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955277.12.3e-0896.67ADP,ATP carrier protein ER-ANT1-like isoform X1 [Cucurbita moschata][more]
BLAST of Carg22771 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22771 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22771 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22771-RACarg22771-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg22771Cucumber (Gy14) v1carcgyB0587
Carg22771Silver-seed gourdcarcarB413
Carg22771Silver-seed gourdcarcarB496
Carg22771Cucumber (Gy14) v2carcgybB0516
Carg22771Cucumber (Gy14) v2carcgybB0518
Carg22771Cucumber (Gy14) v2carcgybB0519
Carg22771Cucumber (Gy14) v1carcgyB0588
Carg22771Cucumber (Gy14) v1carcgyB0590
Carg22771Cucurbita maxima (Rimu)carcmaB0719
Carg22771Cucurbita maxima (Rimu)carcmaB0720
Carg22771Cucurbita maxima (Rimu)carcmaB0721
Carg22771Cucurbita maxima (Rimu)carcmaB0722
Carg22771Cucurbita moschata (Rifu)carcmoB0697
Carg22771Cucurbita moschata (Rifu)carcmoB0698
Carg22771Cucurbita moschata (Rifu)carcmoB0699
Carg22771Cucurbita pepo (Zucchini)carcpeB0722
Carg22771Cucurbita pepo (Zucchini)carcpeB0723
Carg22771Cucurbita pepo (Zucchini)carcpeB0724
Carg22771Cucurbita pepo (Zucchini)carcpeB0725
Carg22771Cucurbita pepo (Zucchini)carcpeB0726
Carg22771Wild cucumber (PI 183967)carcpiB0546
Carg22771Wild cucumber (PI 183967)carcpiB0549
Carg22771Wild cucumber (PI 183967)carcpiB0550
Carg22771Cucumber (Chinese Long) v2carcuB0539
Carg22771Cucumber (Chinese Long) v2carcuB0542
Carg22771Cucumber (Chinese Long) v2carcuB0543
Carg22771Cucumber (Chinese Long) v3carcucB0545
Carg22771Cucumber (Chinese Long) v3carcucB0548
Carg22771Cucumber (Chinese Long) v3carcucB0549
Carg22771Bottle gourd (USVL1VR-Ls)carlsiB465
Carg22771Bottle gourd (USVL1VR-Ls)carlsiB467
Carg22771Bottle gourd (USVL1VR-Ls)carlsiB468
Carg22771Melon (DHL92) v3.5.1carmeB0516
Carg22771Melon (DHL92) v3.5.1carmeB0517
Carg22771Melon (DHL92) v3.6.1carmedB0522
Carg22771Melon (DHL92) v3.6.1carmedB0523
Carg22771Watermelon (Charleston Gray)carwcgB0498
Carg22771Watermelon (Charleston Gray)carwcgB0499
Carg22771Watermelon (Charleston Gray)carwcgB0500
Carg22771Watermelon (97103) v1carwmB0509
Carg22771Watermelon (97103) v1carwmB0510
Carg22771Watermelon (97103) v1carwmB0511
Carg22771Watermelon (97103) v2carwmbB0536
Carg22771Watermelon (97103) v2carwmbB0537
Carg22771Watermelon (97103) v2carwmbB0538
Carg22771Wax gourdcarwgoB0624