Carg22766 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22766
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_224 : 158630 .. 159052 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCAACACACCGGAGCGCCGCAGTTCCGTCCTCACGTCGCCGAGGCGAGCGGCGGCGGCCATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGCGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCATCCTTTCTTACATCCACTCACCCCCAGGTGTATTGA

mRNA sequence

ATGGGCTTCAACACACCGGAGCGCCGCAGTTCCGTCCTCACGTCGCCGAGGCGAGCGGCGGCGGCCATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGCGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCATCCTTTCTTACATCCACTCACCCCCAGGTGTATTGA

Coding sequence (CDS)

ATGGGCTTCAACACACCGGAGCGCCGCAGTTCCGTCCTCACGTCGCCGAGGCGAGCGGCGGCGGCCATGCTCGTCTCTCTATCCACTCTCATGACGCTCTGTGCGAAACAAGCGTACAGAGCGTCGAAAAAGATTCAAACAAAATTGAAATCGAAGCGGTTTCTGAAGAACACGAAGACGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAACCGCGGCAGCGACGAAATGGAAGAGGAGTGGGGAGACGGGGGAGTATGGCAGAAGGCGATCTTGATGGGGGATAAATGCGAGCCCTTGGATTTCTCGGGCGTAATTTATTACGATAGTTACGGGAAGCAGCTGGACGAAGTGCCTCCACGATCGCCACGTGCCAGTCCCTTGCCATCCTTTCTTACATCCACTCACCCCCAGGTGTATTGA

Protein sequence

MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNTKTKKKQKKKKKKNRGSDEMEEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY

Homology

[Close]

BLAST of Carg22766 vs. NCBI nr
Match: XP_022955290.1 (uncharacterized protein LOC111457294 [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 4.8e-55
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKN-XX 60
           MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKN XX
Sbjct: 1   MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKSKRFLKNXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVP 120
           XXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDS GKQLDEVP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSSGKQLDEVP 120

Query: 121 PRSPRASPLPSFLTSTHPQVY 141
           PRSPRASPLPSFLTSTHPQVY
Sbjct: 121 PRSPRASPLPSFLTSTHPQVY 141

[Close]

BLAST of Carg22766 vs. NCBI nr
Match: XP_023542207.1 (uncharacterized protein LOC111802174 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-38
Identity = 101/110 (91.82%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 31  MTLCAKQAYRASKKIQTKLKSKRFLKNXXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKA 90
           MTLCAKQAYRASKKIQTKLKSKRFLKN    XXXXXXXXXXXXXXX  EEWGDGGVWQKA
Sbjct: 1   MTLCAKQAYRASKKIQTKLKSKRFLKN---TXXXXXXXXXXXXXXXMEEEWGDGGVWQKA 60

Query: 91  ILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           ILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLP+FLT+TH QVY
Sbjct: 61  ILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPAFLTTTHRQVY 107

[Close]

BLAST of Carg22766 vs. NCBI nr
Match: XP_011650441.1 (PREDICTED: uncharacterized protein LOC105434785 [Cucumis sativus] >KGN64104.1 hypothetical protein Csa_1G042160 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-36
Identity = 96/163 (58.90%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 1   MGFNTPER--------RSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKS- 60
           M  +TPER          SVL +PRRAAA ++VSLSTLM LCAKQA R SKK+Q KLKS 
Sbjct: 1   MSQSTPERGGSTSISGGGSVLATPRRAAATLIVSLSTLMALCAKQANRVSKKLQIKLKSK 60

Query: 61  --------------KRFLKNXXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGDKC 120
                         KRFLKN                     EEWGDGGVWQKAILMGDKC
Sbjct: 61  QLPRLELRSPQLRPKRFLKN-ISNTLIHKKKNKRGAGDAEEEEWGDGGVWQKAILMGDKC 120

Query: 121 EPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           EPLDFSGVIYYDS GKQL+EVP RSPRASPLP+FL + H QVY
Sbjct: 121 EPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATNHRQVY 162

[Close]

BLAST of Carg22766 vs. NCBI nr
Match: XP_022137455.1 (uncharacterized protein LOC111008895 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 93/165 (56.36%), Postives = 106/165 (64.24%), Query Frame = 0


Query: 1   MGFNTPER------RSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKS--- 60
           MG  TPER        SVL SP+RAAA +L+SLSTL+ LCAK+A R SKK+QTKLKS   
Sbjct: 1   MGHATPERGGSGSGSGSVLASPKRAAATLLISLSTLVALCAKEANRVSKKLQTKLKSKQF 60

Query: 61  ------------KRFLKN----XXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGD 120
                       KRFLK+                         +EWGDGG+WQKAILMGD
Sbjct: 61  PRLELRSPQVRPKRFLKSISDTAITLMQKNKNKKTKRGGCDAEDEWGDGGIWQKAILMGD 120

Query: 121 KCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           KCEPL+FSGVIYYDS GKQL+EVPPRSPRASPLPS+L + H QVY
Sbjct: 121 KCEPLNFSGVIYYDSKGKQLNEVPPRSPRASPLPSYLATGHRQVY 165

[Close]

BLAST of Carg22766 vs. NCBI nr
Match: XP_008456286.1 (PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 107/165 (64.85%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   MGFNTPER--------RSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKS- 60
           M  +TPER          SVL +PRRAAA +LVSLSTL+ LCAKQA RASKK+Q KLKS 
Sbjct: 1   MSQSTPERGGSTSISGGGSVLATPRRAAATLLVSLSTLVALCAKQANRASKKLQIKLKSK 60

Query: 61  --------------KRFLKN--XXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGD 120
                         KRFLKN           XXXXXXXXXXXX  WGDGGVWQKAILMGD
Sbjct: 61  QLPRLELRSPQLRPKRFLKNISNTAITLIHKXXXXXXXXXXXXXXWGDGGVWQKAILMGD 120

Query: 121 KCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           KCEPLDFSGVIYYDS GKQL+EVP RSPRASPLP+FL ++H QVY
Sbjct: 121 KCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY 165

[Close]

BLAST of Carg22766 vs. TAIR10
Match: AT1G49000.1 (unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-18
Identity = 64/159 (40.25%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 1   MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKSK-------- 60
           M  +TPE  SS   S +R + + LVS   +M LCA+ A R SKK++ K K +        
Sbjct: 1   MDRSTPEHNSS--PSHKRLSVSFLVS---MMVLCARHANRLSKKLKLKSKKRTCSGGEGG 60

Query: 61  --RFLKN-----------XXXXXXXXXXXXXXXXXXXXXEEWG-----DGGVWQKAILMG 120
             RF  N                                EE       + G+WQ+ ILMG
Sbjct: 61  GERFRWNMISSSMSSPRPKELFTTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMG 120

Query: 121 DKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLT 134
            KCEPLDFSGVIYYDS G+ L+EVPPRSPR +PLPS+ T
Sbjct: 121 GKCEPLDFSGVIYYDSNGRLLNEVPPRSPRGTPLPSYPT 154

[Close]

BLAST of Carg22766 vs. TAIR10
Match: AT3G18560.1 (unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-15
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 79  EEWGDGGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTH 137
           E+  + GVWQ+ ILMG KCEPLD+SGVIYYD  G QL +VPPRSPRAS +P   T ++
Sbjct: 126 EDEEEYGVWQREILMGGKCEPLDYSGVIYYDCSGHQLKQVPPRSPRASLVPERPTRSY 183

[Close]

BLAST of Carg22766 vs. TAIR10
Match: AT1G71740.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 84  GGVWQKAILMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPL 129
           G +WQK ILMG KC+  DFSGVI YD+ G    +V P +  + PL
Sbjct: 86  GPLWQKNILMGGKCQLPDFSGVILYDADG----QVVPPAKNSLPL 126

[Close]

BLAST of Carg22766 vs. TAIR10
Match: AT3G14760.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0


Query: 86  VWQKAILMGDKCEPLDFSGVIYYDSYG 113
           VWQ+ ILMG+KCE   FSG+I YD  G
Sbjct: 116 VWQRPILMGEKCELPRFSGLILYDECG 142

[Close]

BLAST of Carg22766 vs. TrEMBL
Match: tr|A0A0A0LSY3|A0A0A0LSY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042160 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.7e-37
Identity = 96/163 (58.90%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 1   MGFNTPER--------RSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKS- 60
           M  +TPER          SVL +PRRAAA ++VSLSTLM LCAKQA R SKK+Q KLKS 
Sbjct: 1   MSQSTPERGGSTSISGGGSVLATPRRAAATLIVSLSTLMALCAKQANRVSKKLQIKLKSK 60

Query: 61  --------------KRFLKNXXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGDKC 120
                         KRFLKN                     EEWGDGGVWQKAILMGDKC
Sbjct: 61  QLPRLELRSPQLRPKRFLKN-ISNTLIHKKKNKRGAGDAEEEEWGDGGVWQKAILMGDKC 120

Query: 121 EPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           EPLDFSGVIYYDS GKQL+EVP RSPRASPLP+FL + H QVY
Sbjct: 121 EPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATNHRQVY 162

[Close]

BLAST of Carg22766 vs. TrEMBL
Match: tr|A0A1S3C2V4|A0A1S3C2V4_CUCME (uncharacterized protein LOC103496246 OS=Cucumis melo OX=3656 GN=LOC103496246 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 107/165 (64.85%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   MGFNTPER--------RSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLKS- 60
           M  +TPER          SVL +PRRAAA +LVSLSTL+ LCAKQA RASKK+Q KLKS 
Sbjct: 1   MSQSTPERGGSTSISGGGSVLATPRRAAATLLVSLSTLVALCAKQANRASKKLQIKLKSK 60

Query: 61  --------------KRFLKN--XXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMGD 120
                         KRFLKN           XXXXXXXXXXXX  WGDGGVWQKAILMGD
Sbjct: 61  QLPRLELRSPQLRPKRFLKNISNTAITLIHKXXXXXXXXXXXXXXWGDGGVWQKAILMGD 120

Query: 121 KCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLTSTHPQVY 141
           KCEPLDFSGVIYYDS GKQL+EVP RSPRASPLP+FL ++H QVY
Sbjct: 121 KCEPLDFSGVIYYDSNGKQLNEVPLRSPRASPLPAFLATSHRQVY 165

[Close]

BLAST of Carg22766 vs. TrEMBL
Match: tr|B9I2P8|B9I2P8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G059500v3 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.1e-22
Identity = 70/161 (43.48%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 1   MGFNTPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTKLK---------- 60
           M   +P+  SS  +SP+R +   LVS+S LM LCAK A R S K++T  K          
Sbjct: 1   MVITSPQHDSSSSSSPKRLSPGFLVSISCLMALCAKHASRVSSKLKTANKPTYKNNCSTI 60

Query: 61  --------------SKRFL-----KNXXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAI 120
                          K+ L     K                      +E+GDGGVWQKAI
Sbjct: 61  NKSPRHSPRLPLARPKQLLTQISNKAITLMHRRRKDDRENVDVLLGPDEFGDGGVWQKAI 120

Query: 121 LMGDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFL 133
           LMGDKC+PLDFSGVIYYD  GKQL+EVP +SPRASPLP++L
Sbjct: 121 LMGDKCQPLDFSGVIYYDGSGKQLNEVPLKSPRASPLPAYL 161

[Close]

BLAST of Carg22766 vs. TrEMBL
Match: tr|A0A2I4HIX6|A0A2I4HIX6_9ROSI (uncharacterized protein LOC109018321 OS=Juglans regia OX=51240 GN=LOC109018321 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 68/159 (42.77%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 5   TPERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTK---------------- 64
           TPE  S    S +   A++ +S+S  M LCA++A R S+K++ K                
Sbjct: 4   TPEHGSG---SSKPKPASLFISMSAFMALCAERAGRVSRKLKAKKTRRMTTRTAHAQKTE 63

Query: 65  --------LKSKRFLKN------XXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILMG 124
                    + K+ L                             EEWGDGGVWQK ILMG
Sbjct: 64  QLTSPTLTSRPKQLLSTISNKAIRFMHPKKVGEEGTDAGRTDQPEEWGDGGVWQKTILMG 123

Query: 125 DKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLT 134
           DKCEPL+FSGVIYYDSYG QL+EVPPRSPRASPLP +LT
Sbjct: 124 DKCEPLNFSGVIYYDSYGHQLNEVPPRSPRASPLPGYLT 159

[Close]

BLAST of Carg22766 vs. TrEMBL
Match: tr|B9RE44|B9RE44_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1618130 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 66/160 (41.25%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 6   PERRSSVLTSPRRAAAAMLVSLSTLMTLCAKQAYRASKKIQTK----------------- 65
           PE   +  +SP+R     L+S+S+LM +CAK A R S K++T                  
Sbjct: 9   PESEHASASSPKRLTLGFLMSISSLMAICAKHAGRVSNKLKTASFKTSHHHHRDHEGHKS 68

Query: 66  ------------LKSKRFL---KNXXXXXXXXXXXXXXXXXXXXXEEWGDGGVWQKAILM 125
                       ++ K+ L    N                     +E+GDGGVWQKAILM
Sbjct: 69  PKLLLLSPKSPLVRPKQLLTQISNKAITFVHSKKKRDGTADVVAPDEFGDGGVWQKAILM 128

Query: 126 GDKCEPLDFSGVIYYDSYGKQLDEVPPRSPRASPLPSFLT 134
           GDKC+PLDFSGVIYYDS GKQL+++P RSPRASPLP +LT
Sbjct: 129 GDKCQPLDFSGVIYYDSCGKQLNQLPLRSPRASPLPGYLT 168

The following BLAST results are available for this feature:

BLAST of Carg22766 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955290.1	4.8e-55	98.58	uncharacterized protein LOC111457294 [Cucurbita moschata]	[more]
XP_023542207.1	1.1e-38	91.82	uncharacterized protein LOC111802174 [Cucurbita pepo subsp. pepo]	[more]
XP_011650441.1	1.0e-36	58.90	PREDICTED: uncharacterized protein LOC105434785 [Cucumis sativus] >KGN64104.1 hy...	[more]
XP_022137455.1	1.7e-36	56.36	uncharacterized protein LOC111008895 [Momordica charantia]	[more]
XP_008456286.1	1.9e-35	64.85	PREDICTED: uncharacterized protein LOC103496246 [Cucumis melo]	[more]

BLAST of Carg22766 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49000.1	5.7e-18	40.25	unknown protein	[more]
AT3G18560.1	4.5e-15	62.07	unknown protein	[more]
AT1G71740.1	4.3e-05	51.11	unknown protein	[more]
AT3G14760.1	6.1e-04	62.96	unknown protein	[more]

BLAST of Carg22766 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22766 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSY3\|A0A0A0LSY3_CUCSA	6.7e-37	58.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042160 PE=4 SV=1	[more]
tr\|A0A1S3C2V4\|A0A1S3C2V4_CUCME	1.3e-35	64.85	uncharacterized protein LOC103496246 OS=Cucumis melo OX=3656 GN=LOC103496246 PE=...	[more]
tr\|B9I2P8\|B9I2P8_POPTR	6.1e-22	43.48	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G059500v3 PE=...	[more]
tr\|A0A2I4HIX6\|A0A2I4HIX6_9ROSI	1.4e-21	42.77	uncharacterized protein LOC109018321 OS=Juglans regia OX=51240 GN=LOC109018321 P...	[more]
tr\|B9RE44\|B9RE44_RICCO	3.0e-21	41.25	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1618130 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22766-RA	Carg22766-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..140
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 59..135
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 9..53
None	No IPR available	PANTHER	PTHR33237:SF3	SUBFAMILY NOT NAMED	coord: 9..53
None	No IPR available	PANTHER	PTHR33237:SF3	SUBFAMILY NOT NAMED	coord: 59..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22766	Cla018996	Watermelon (97103) v1	carwmB0511
Carg22766	Csa1G042160	Cucumber (Chinese Long) v2	carcuB0541
Carg22766	Csa1G015870	Cucumber (Chinese Long) v2	carcuB0543
Carg22766	ClCG06G015060	Watermelon (Charleston Gray)	carwcgB0500
Carg22766	CSPI01G06620	Wild cucumber (PI 183967)	carcpiB0548
Carg22766	CSPI01G03550	Wild cucumber (PI 183967)	carcpiB0550
Carg22766	Cucsa.198830	Cucumber (Gy14) v1	carcgyB0590
Carg22766	CmaCh11G002440	Cucurbita maxima (Rimu)	carcmaB0720
Carg22766	Lsi02G001620	Bottle gourd (USVL1VR-Ls)	carlsiB466
Carg22766	Lsi06G013540	Bottle gourd (USVL1VR-Ls)	carlsiB468
Carg22766	Cp4.1LG09g11600	Cucurbita pepo (Zucchini)	carcpeB0722
Carg22766	Cp4.1LG04g14310	Cucurbita pepo (Zucchini)	carcpeB0726
Carg22766	CsGy1G003500	Cucumber (Gy14) v2	carcgybB0519
Carg22766	CsaV3_1G003580	Cucumber (Chinese Long) v3	carcucB0549
Carg22766	CsaV3_1G006470	Cucumber (Chinese Long) v3	carcucB0547
Carg22766	Bhi08G001003	Wax gourd	carwgoB0623

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22766	Carg04798	Silver-seed gourd	carcarB412
Carg22766	Carg09165	Silver-seed gourd	carcarB496

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22766	Silver-seed gourd	carcarB413
Carg22766	Cucumber (Gy14) v2	carcgybB0518
Carg22766	Cucumber (Gy14) v1	carcgyB0588
Carg22766	Cucurbita maxima (Rimu)	carcmaB0719
Carg22766	Cucurbita maxima (Rimu)	carcmaB0721
Carg22766	Cucurbita maxima (Rimu)	carcmaB0722
Carg22766	Cucurbita moschata (Rifu)	carcmoB0697
Carg22766	Cucurbita moschata (Rifu)	carcmoB0698
Carg22766	Cucurbita moschata (Rifu)	carcmoB0699
Carg22766	Cucurbita pepo (Zucchini)	carcpeB0723
Carg22766	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22766	Wild cucumber (PI 183967)	carcpiB0549
Carg22766	Cucumber (Chinese Long) v2	carcuB0542
Carg22766	Cucumber (Chinese Long) v3	carcucB0548
Carg22766	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22766	Melon (DHL92) v3.5.1	carmeB0516
Carg22766	Melon (DHL92) v3.6.1	carmedB0522
Carg22766	Watermelon (Charleston Gray)	carwcgB0498
Carg22766	Watermelon (97103) v1	carwmB0509
Carg22766	Watermelon (97103) v2	carwmbB0536
Carg22766	Watermelon (97103) v2	carwmbB0538