Carg22716 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22716
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ycf20-like protein
Location	Cucurbita_argyrosperma_scaffold_230 : 272480 .. 274291 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGATTTTGTGAACAATTTCCTCCAATGGACAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCGCTAGGGTTTCGTCTCGGCGCTATCAATTCCAGCGGCATTTGAAGTTTCCGGCAAGAACTTTACTGGTAATTTTCTCGGTCTCGAAATTTCATTTGTATTTCTCTTGCCTGAATTTGTTGTGTGTTCTAATTCACTGCTGAAATACTTGCTTGAATGTTCCTCGAGCATCATAGGCCGACTAGACTGCAACTGTTTGATATTTCTCCTTTATCTCTTGCATTTCGGTTACACAAGTTTATACGAATGGGATGCACGATAGTGATCATATGTTGAATATCCTACGCATTGGTTTGAATTCTAAACATTGGATTTTAGATTTGTTGCAAAGTTGTAGATTGAACAATTTTGATTTGATTTTAATTTGTAGTACAGAGGCGGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCTGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGGTAGATGTGGAATTTATAAACTTGTATCACGTGTTGTTAAGAGACCTATGCTATTCTTCTTGCATATATTTTCATTTTAGCTGGAGAACTATAGGTCCACAAGATCATGTCTTAATAGTATTGGATGAATGCTAATTTTGTTGAGCACAGAAGTTAAGCTGGAGAGGAATAGATTAGTAGCACGTCTAGAGAGGTTGAGAACTTTTGGGAGGGGATTTGGGGAGGTTGCTAGATTTAATGCATCTTGTGAGCGTCCATTCTTTTTTAATTACTAGTTTGGTCTCTTTCTTTTGGATTGAAGTCTCTTTCTGTAGTTAGTGTTAAGTCTCCTTTTGCGGGGTCGTTTGTTGTATGTCCTTGTACATTCTTTCATTTTTCTATATAAAAGTTTTTTTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTTGGTTGTGATGTTACTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGAAAGATGTTGCTTCCTGGTTTGAAATAAAACAAAAGGTAGTTCTTTTTATCTTAGAGGAAAGTTATTTTTGTACGAGGCACGAGTTCTTATTCCATCTTGTGTTACATTTGTAACTGTATAATCTTATAGATACCTATTATAGGATGTTTCTGTACTATGATCTTCTGCAATCTTCACATTTTTAGC

mRNA sequence

AACAGATTTTGTGAACAATTTCCTCCAATGGACAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCGCTAGGGTTTCGTCTCGGCGCTATCAATTCCAGCGGCATTTGAAGTTTCCGGCAAGAACTTTACTGTACAGAGGCGGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCTGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGAAAGATGTTGCTTCCTGGTTTGAAATAAAACAAAAGGTAGTTCTTTTTATCTTAGAGGAAAGTTATTTTTGTACGAGGCACGAGTTCTTATTCCATCTTGTGTTACATTTGTAACTGTATAATCTTATAGATACCTATTATAGGATGTTTCTGTACTATGATCTTCTGCAATCTTCACATTTTTAGC

Coding sequence (CDS)

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Protein sequence

MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of Carg22716 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata])

HSP 1 Score: 404.1 bits (1037), Expect = 2.9e-109
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of Carg22716 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.5 bits (1033), Expect = 8.5e-109
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKS PFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of Carg22716 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 1.9e-108
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNM YVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of Carg22716 vs. NCBI nr
Match: XP_004139097.1 (PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660207.1 PREDICTED: ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_1G652280 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 4.0e-90
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

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BLAST of Carg22716 vs. NCBI nr
Match: XP_022149955.1 (ycf20-like protein [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 164/207 (79.23%), Postives = 181/207 (87.44%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M AMI+QSRLL I +Y S+G CLT + CL++  GY A+ N  NST CLKSAPFPR+SF+T
Sbjct: 6   MGAMILQSRLLKIESYSSRGSCLTNISCLVYYWGYAAVFNAQNSTRCLKSAPFPRRSFQT 65

Query: 61  SRHL--QQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARK 120
           SRHL  ++LAFALDT G+  NGG DN  DG+ESNLGRTRLGRLVS+ ARQLLEKLNSARK
Sbjct: 66  SRHLRKRKLAFALDTSGLPRNGGEDN-PDGDESNLGRTRLGRLVSSAARQLLEKLNSARK 125

Query: 121 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRL 180
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPPPLLTRRL
Sbjct: 126 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGVLMYRKPPPLLTRRL 185

Query: 181 KSLIVLINYWKAGVCLGLFVDAFKLGS 206
           KS IV+INYWKAGVCLGLFVDAFKLGS
Sbjct: 186 KSFIVMINYWKAGVCLGLFVDAFKLGS 211

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BLAST of Carg22716 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-52
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Carg22716 vs. TAIR10
Match: AT3G56830.1 (Protein of unknown function (DUF565))

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-25
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 62  RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRT----RLGRLVSAGARQLLEKLNSAR 121
           RH +++++      + S+ GGD  D  + S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 122 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 181
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 182 LKSLIVLINYWKAGVCLGLFVDAFK 203
           ++S I + NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Carg22716 vs. TAIR10
Match: AT5G43050.1 (Protein of unknown function (DUF565))

HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04
Identity = 28/79 (35.44%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 127 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLIN 186
           LL GFY A  ++   G  G  DV+ A + V   E++    Y +            I L+N
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFP------IALLN 145

Query: 187 YWKAGVCLGLFVDAFKLGS 206
            +K G   GLF+DAFKL S
Sbjct: 146 NFKMGFTYGLFIDAFKLAS 158

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BLAST of Carg22716 vs. Swiss-Prot
Match: sp|O80813|YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-51
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Carg22716 vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 93  LGRTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 152
           +  TRL    +   + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 153 GVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G++VA IE +G  MY K       +      SLI  INY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Carg22716 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-12
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAA E    ++Y        ++L   I L N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg22716 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAAIE +  ++Y        R     I L+N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg22716 vs. Swiss-Prot
Match: sp|P72983|YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 33/111 (29.73%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           RTRL  +V    +QL +   +  +     +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           ++   E +    Y++   +   + +    ++N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAE----VLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Carg22716 vs. TrEMBL
Match: tr|A0A0A0LXR2|A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.6e-90
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Carg22716 vs. TrEMBL
Match: tr|A0A1S3B8Z3|A0A1S3B8Z3_CUCME (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.0e-70
Identity = 136/151 (90.07%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 55  RKSFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLN 114
           R  F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLN
Sbjct: 67  RCGFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN 126

Query: 115 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLL 174
           SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLL
Sbjct: 127 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 186

Query: 175 TRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           TRRLKS IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 187 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 217

[Close]

BLAST of Carg22716 vs. TrEMBL
Match: tr|A0A1Q3C7M3|A0A1Q3C7M3_CEPFO (DUF565 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19649 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.7e-63
Identity = 134/205 (65.37%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAM++Q  L  + N +S  LC+T   C I N        G  S + +KS P P+ S++ 
Sbjct: 9   MEAMVLQPGLSLMENKVSGRLCMTLATCAIQNWHSEPSFGGQISNIRIKSMPCPKTSYQR 68

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
            RH  QLAFALDTGG   NGG ++L + +  +LG TRLGR+VSAG RQLLEKLNSARKNF
Sbjct: 69  RRHHLQLAFALDTGGNLVNGGQESL-NSDSPDLGGTRLGRIVSAGGRQLLEKLNSARKNF 128

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           P KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S
Sbjct: 129 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLSTGRLQS 188

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            + ++NYWKAGVCLGLFVDAFKLGS
Sbjct: 189 FVAMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Carg22716 vs. TrEMBL
Match: tr|A0A061EXE3|A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 7.9e-63
Identity = 135/203 (66.50%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 4   MIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT-SR 63
           M +Q+ L  + N + +  C+T   C I        + G  S + LKSA FP+KSF T  R
Sbjct: 8   MYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFSTRKR 67

Query: 64  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPT 123
           H  ++AFALDTGGVS +GG D+L + + SNLG TRLGR+VSAG+RQLLEKLNSARKNFP 
Sbjct: 68  HGWKIAFALDTGGVSGDGGEDSL-NSDSSNLGGTRLGRIVSAGSRQLLEKLNSARKNFPM 127

Query: 124 KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 183
           K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S +
Sbjct: 128 KVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRLQSFV 187

Query: 184 VLINYWKAGVCLGLFVDAFKLGS 206
           V++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 VMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of Carg22716 vs. TrEMBL
Match: tr|D7U6I2|D7U6I2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0207g00110 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 7.4e-61
Identity = 135/206 (65.53%), Postives = 157/206 (76.21%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMP-CLIHNMGYVAILNGHNSTLCLKSAPFPRKSFR 60
           M  +++QS L    +  S    +T+   C I N       +G  S L +KSAPFPRKSF+
Sbjct: 21  MGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQISKLGMKSAPFPRKSFQ 80

Query: 61  TSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKN 120
           T RH  + AFALDTGG+  NGG +NL +GN  +LG+TRLGR+VSAG RQLL KLNSARKN
Sbjct: 81  TRRHGWKTAFALDTGGIPDNGGQENL-NGNGPDLGQTRLGRIVSAGGRQLLAKLNSARKN 140

Query: 121 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLK 180
           FP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+L+YKK     T RL+
Sbjct: 141 FPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLVYKKSSSQSTGRLQ 200

Query: 181 SLIVLINYWKAGVCLGLFVDAFKLGS 206
           SL+V+INYWKAGVCLGLFVDAFKLGS
Sbjct: 201 SLVVMINYWKAGVCLGLFVDAFKLGS 225

The following BLAST results are available for this feature:

BLAST of Carg22716 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924878.1	2.9e-109	100.00	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_023520636.1	8.5e-109	99.51	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022973215.1	1.9e-108	99.51	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]
XP_004139097.1	4.0e-90	83.90	PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20...	[more]
XP_022149955.1	4.0e-82	79.23	ycf20-like protein [Momordica charantia]	[more]

BLAST of Carg22716 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	3.1e-52	64.63	Protein of unknown function (DUF565)	[more]
AT3G56830.1	5.4e-25	40.69	Protein of unknown function (DUF565)	[more]
AT5G43050.1	3.1e-04	35.44	Protein of unknown function (DUF565)	[more]

BLAST of Carg22716 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80813\|YC20L_ARATH	5.5e-51	64.63	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
sp\|Q9MUL5\|YCF20_MESVI	1.6e-18	50.43	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
sp\|Q1XDS2\|YCF20_PYRYE	1.0e-12	39.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P51214\|YCF20_PORPU	1.7e-12	39.64	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|P72983\|YC20L_SYNY3	1.3e-07	29.73	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of Carg22716 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXR2\|A0A0A0LXR2_CUCSA	2.6e-90	83.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1	[more]
tr\|A0A1S3B8Z3\|A0A1S3B8Z3_CUCME	3.0e-70	90.07	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1	[more]
tr\|A0A1Q3C7M3\|A0A1Q3C7M3_CEPFO	4.7e-63	65.37	DUF565 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_1...	[more]
tr\|A0A061EXE3\|A0A061EXE3_THECC	7.9e-63	66.50	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025117 PE=4 SV=1	[more]
tr\|D7U6I2\|D7U6I2_VITVI	7.4e-61	65.53	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0207g00110 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22716-RA	Carg22716-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 143..205 e-value: 2.6E-21 score: 75.8
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..205
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 6..205

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22716	Wax gourd	carwgoB0646
Carg22716	Silver-seed gourd	carcarB502
Carg22716	Cucumber (Gy14) v2	carcgybB0542
Carg22716	Cucumber (Gy14) v1	carcgyB0613
Carg22716	Cucurbita maxima (Rimu)	carcmaB0748
Carg22716	Cucurbita maxima (Rimu)	carcmaB0749
Carg22716	Cucurbita moschata (Rifu)	carcmoB0726
Carg22716	Cucurbita moschata (Rifu)	carcmoB0727
Carg22716	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22716	Cucurbita pepo (Zucchini)	carcpeB0757
Carg22716	Wild cucumber (PI 183967)	carcpiB0571
Carg22716	Cucumber (Chinese Long) v2	carcuB0565
Carg22716	Cucumber (Chinese Long) v3	carcucB0573
Carg22716	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22716	Melon (DHL92) v3.5.1	carmeB0540
Carg22716	Melon (DHL92) v3.6.1	carmedB0545
Carg22716	Watermelon (Charleston Gray)	carwcgB0519
Carg22716	Watermelon (97103) v1	carwmB0531
Carg22716	Watermelon (97103) v2	carwmbB0560