Carg22695 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22695
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	J domain-containing protein spf31-like
Location	Cucurbita_argyrosperma_scaffold_230 : 106006 .. 106805 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTGGAGGCAAGAGAAGACGACCATTCAGAATTCTCAGATATAGGGAGGGAGATTCATGCCAATGATAGAGTACGACGTATAAAGCTCAGACCCTTTTACATGTTCTAGCCTCCCTGCACGTGCCGACGTCTGCCTCACTACTCTATTTTCTTTTACGGGAAAAAGTTTATGCTTTGTTCTTCACAGTTTTCTGGTTCTATTATCTGGTGGTTTAACACCTTCAAATTTTCTGGTTTACTGATGAGTGCTTAACATAACGTCATAACATGAATACTTGATGTTCAACTTGGAGCTGGAACATGGAGTTCTGAACCTCTGATTCTTTACCAAATTCTGTACGGAACAAATGGTTTAATTTGCACTTTTGCCTTTCCCTTCTTCATCAGGTTTCAAGCTGGAGAGATTTTATGAAGGGTGGAAAAAAGGTGAGATATGGTATACTCAGGTTGCGTTGAAGTGATGAATGCATGCGACTGAAATGGCCCAAATTTGAAATTTTTGTTTGTGTTACAGGCTAAGAAAGGGGAAACTCGACCGCCAAAGCTGAAGACTGAGGACCCCAACAAATCATATGTCCAGCGGCCAGTAAAGCGAGGTTAAATGAATGAACTGCAACGGAGCTCCGGCGAGTACTCCGGCGAGTAGTAGGGGAGATTGTGGATGTAGGCTGGCAGCAGTATCAAATCTTATTATTACTCGCCTGTAAGCTACATAGTTAGAATGCAAATCTTATCTATATAAACATCAAGGCTGTAAAATCTTATCACTAAAATTAAAAGGATTGTTTTAATTAT

mRNA sequence

ATGCCATTGGAGGCAAGAGAAGACGACCATTCAGAATTCTCAGATATAGGGAGGGAGATTCATGCCAATGATAGAGTTTCAAGCTGGAGAGATTTTATGAAGGGTGGAAAAAAGGCTAAGAAAGGGGAAACTCGACCGCCAAAGCTGAAGACTGAGGACCCCAACAAATCATATGTCCAGCGGCCAGTAAAGCGAGGTTAAATGAATGAACTGCAACGGAGCTCCGGCGAGTACTCCGGCGAGTAGTAGGGGAGATTGTGGATGTAGGCTGGCAGCAGTATCAAATCTTATTATTACTCGCCTGTAAGCTACATAGTTAGAATGCAAATCTTATCTATATAAACATCAAGGCTGTAAAATCTTATCACTAAAATTAAAAGGATTGTTTTAATTAT

Coding sequence (CDS)

ATGCCATTGGAGGCAAGAGAAGACGACCATTCAGAATTCTCAGATATAGGGAGGGAGATTCATGCCAATGATAGAGTTTCAAGCTGGAGAGATTTTATGAAGGGTGGAAAAAAGGCTAAGAAAGGGGAAACTCGACCGCCAAAGCTGAAGACTGAGGACCCCAACAAATCATATGTCCAGCGGCCAGTAAAGCGAGGTTAA

Protein sequence

MPLEAREDDHSEFSDIGREIHANDRVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG

Homology

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BLAST of Carg22695 vs. NCBI nr
Match: XP_004139080.1 (PREDICTED: dnaJ homolog subfamily C member 8 [Cucumis sativus] >KGN66598.1 hypothetical protein Csa_1G637960 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 210 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 251

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BLAST of Carg22695 vs. NCBI nr
Match: XP_008450275.1 (PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 209 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 250

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BLAST of Carg22695 vs. NCBI nr
Match: XP_022141953.1 (dnaJ homolog subfamily C member 8 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 210 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 251

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BLAST of Carg22695 vs. NCBI nr
Match: XP_022933700.1 (dnaJ homolog subfamily C member 8-like [Cucurbita moschata] >XP_023520681.1 dnaJ homolog subfamily C member 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 210 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 251

[Close]

BLAST of Carg22695 vs. NCBI nr
Match: XP_022961276.1 (dnaJ homolog subfamily C member 8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 210 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 251

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BLAST of Carg22695 vs. TAIR10
Match: AT5G22080.1 (Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDF K GKKAKKGETRPPKLKTEDPNKSYVQRPVK+G
Sbjct: 205 RVSSWRDFQKAGKKAKKGETRPPKLKTEDPNKSYVQRPVKKG 246

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BLAST of Carg22695 vs. TrEMBL
Match: tr|A0A1S3BPJ1|A0A1S3BPJ1_CUCME (LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 OS=Cucumis melo OX=3656 GN=LOC103491930 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 209 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 250

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BLAST of Carg22695 vs. TrEMBL
Match: tr|A0A0A0LXW6|A0A0A0LXW6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G637960 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG
Sbjct: 210 RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 251

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BLAST of Carg22695 vs. TrEMBL
Match: tr|M5WCJ0|M5WCJ0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G145600 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGE RPPKLKTEDPNKSYVQRPVKRG
Sbjct: 200 RVSSWRDFMKGGKKAKKGEIRPPKLKTEDPNKSYVQRPVKRG 241

[Close]

BLAST of Carg22695 vs. TrEMBL
Match: tr|A0A2G3CBG5|A0A2G3CBG5_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_17271 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGE RPPKLKTEDPNKSYVQRPVKRG
Sbjct: 220 RVSSWRDFMKGGKKAKKGEIRPPKLKTEDPNKSYVQRPVKRG 261

[Close]

BLAST of Carg22695 vs. TrEMBL
Match: tr|A0A1U8H3D3|A0A1U8H3D3_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_34133 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 25  RVSSWRDFMKGGKKAKKGETRPPKLKTEDPNKSYVQRPVKRG 67
           RVSSWRDFMKGGKKAKKGE RPPKLKTEDPNKSYVQRPVKRG
Sbjct: 220 RVSSWRDFMKGGKKAKKGEIRPPKLKTEDPNKSYVQRPVKRG 261

The following BLAST results are available for this feature:

BLAST of Carg22695 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139080.1	1.5e-14	100.00	PREDICTED: dnaJ homolog subfamily C member 8 [Cucumis sativus] >KGN66598.1 hypot...	[more]
XP_008450275.1	1.5e-14	100.00	PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo]	[more]
XP_022141953.1	1.5e-14	100.00	dnaJ homolog subfamily C member 8 [Momordica charantia]	[more]
XP_022933700.1	1.5e-14	100.00	dnaJ homolog subfamily C member 8-like [Cucurbita moschata] >XP_023520681.1 dnaJ...	[more]
XP_022961276.1	1.5e-14	100.00	dnaJ homolog subfamily C member 8-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg22695 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22080.1	1.1e-16	92.86	Chaperone DnaJ-domain superfamily protein	[more]

BLAST of Carg22695 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22695 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPJ1\|A0A1S3BPJ1_CUCME	9.8e-15	100.00	LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0A0LXW6\|A0A0A0LXW6_CUCSA	9.8e-15	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G637960 PE=4 SV=1	[more]
tr\|M5WCJ0\|M5WCJ0_PRUPE	4.9e-14	97.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G145600 PE=4 SV=1	[more]
tr\|A0A2G3CBG5\|A0A2G3CBG5_CAPCH	4.9e-14	97.62	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_17271 PE=4 SV=1	[more]
tr\|A0A1U8H3D3\|A0A1U8H3D3_CAPAN	4.9e-14	97.62	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_34133 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22695-RA	Carg22695-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22695	Lsi06G006390	Bottle gourd (USVL1VR-Ls)	carlsiB485

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22695	Wild cucumber (PI 183967)	carcpiB0571
Carg22695	Cucumber (Chinese Long) v2	carcuB0565
Carg22695	Cucumber (Chinese Long) v3	carcucB0573
Carg22695	Melon (DHL92) v3.5.1	carmeB0541
Carg22695	Melon (DHL92) v3.6.1	carmedB0546
Carg22695	Watermelon (Charleston Gray)	carwcgB0521
Carg22695	Watermelon (97103) v1	carwmB0532
Carg22695	Watermelon (97103) v2	carwmbB0562
Carg22695	Wax gourd	carwgoB0645
Carg22695	Silver-seed gourd	carcarB502
Carg22695	Cucumber (Gy14) v2	carcgybB0542
Carg22695	Cucumber (Gy14) v1	carcgyB0613
Carg22695	Cucurbita maxima (Rimu)	carcmaB0748
Carg22695	Cucurbita maxima (Rimu)	carcmaB0749
Carg22695	Cucurbita moschata (Rifu)	carcmoB0726
Carg22695	Cucurbita moschata (Rifu)	carcmoB0727
Carg22695	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22695	Cucurbita pepo (Zucchini)	carcpeB0757