Carg22689 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22689
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_230 : 60067 .. 60940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTCTTCTTAAAGAGACACTCAAAGCTCTTTGTGGTTCGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGCTGCCAAAACCCCAAGTAAGATTCATTCTCTTCAACCCCATGAAATCCCATATTTCCCTTTTAAGAATGATGGGATCTGGGTTTGTCAATCCCTAAAAGTGGGATGTTCATTAATTAGCTTTGGATTTATGTTTCTTTCATAGCTTTGGAAGTAGAATGGTAATTAACTAGCTAGATCCACATGATTGGTTGAAGCAGATTGTTAGATATCTGTTCTTGTTCGGTTGTCACTGACTGAAGCATCATTTTCTTTTGTTCCTTCTATGAATTGATAGCCAATTATTTTGGAGTTGCAGGCTTCTGATATGGGAAGAATGCCATTACCAGCACTTGCCCAGCTTTGAGTCTTCTGGTAATGGGAGTTCCAAATTATTACCCCTTGAGGACTGGGAAGGATGTTCATCCATGCAACAGGCGAATCAAGTGGAGGGCGAACTTTTTTCACTAATGAAACAAATGATGTGTAGTAAACAGATCAGTCTAGTAGGTGAAGGGTAAGAAGCTTGCAGATCTCAGTTACTTTTTCTGTCAGTTCTAGTTTTATATGAACATGGTATGCACATTTGTTCGTTTTCAGGATTGTCGGGCGAGCTGCGTTTACGGGAAACCATCAGTGGATTCTGTCGAGCGATTCTACAAGAGATGCCTATCCACCAGAGGTATGTATTCATTGGAATCATGCAGAAATGGGATTCTTGGCGATTTCTTGTTTTTGAGGTTTTGATTGTTTTGGTATGTGTTTCCAGGTTCTTAATGAGTTGCATCAACAATTTCTTGCTGGGATGCAGGTTTGA

mRNA sequence

ATGGGGTTTCTTCTTAAAGAGACACTCAAAGCTCTTTGTGGTTCGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGCTGCCAAAACCCCAAGCTTCTGATATGGGAAGAATGCCATTACCAGCACTTGCCCAGCTTTGAGTCTTCTGGTAATGGGAGTTCCAAATTATTACCCCTTGAGGACTGGGAAGGATGTTCATCCATGCAACAGGCGAATCAAGTGGAGGGCGAACTTTTTTCACTAATGAAACAAATGATGTGTAGTAAACAGATCAGTCTAGTAGGTGAAGGGATTGTCGGGCGAGCTGCGTTTACGGGAAACCATCAGTGGATTCTGTCGAGCGATTCTACAAGAGATGCCTATCCACCAGAGGTTCTTAATGAGTTGCATCAACAATTTCTTGCTGGGATGCAGGTTTGA

Coding sequence (CDS)

ATGGGGTTTCTTCTTAAAGAGACACTCAAAGCTCTTTGTGGTTCGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGCTGCCAAAACCCCAAGCTTCTGATATGGGAAGAATGCCATTACCAGCACTTGCCCAGCTTTGAGTCTTCTGGTAATGGGAGTTCCAAATTATTACCCCTTGAGGACTGGGAAGGATGTTCATCCATGCAACAGGCGAATCAAGTGGAGGGCGAACTTTTTTCACTAATGAAACAAATGATGTGTAGTAAACAGATCAGTCTAGTAGGTGAAGGGATTGTCGGGCGAGCTGCGTTTACGGGAAACCATCAGTGGATTCTGTCGAGCGATTCTACAAGAGATGCCTATCCACCAGAGGTTCTTAATGAGTTGCATCAACAATTTCTTGCTGGGATGCAGGTTTGA

Protein sequence

MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRDAYPPEVLNELHQQFLAGMQV

Homology

[Close]

BLAST of Carg22689 vs. NCBI nr
Match: XP_022930928.1 (transcription factor LHW-like [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL
Sbjct: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
           EDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDST+D
Sbjct: 61  EDWEGCSSMQQANQVEGKLFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTKD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
           AYPPEVLNELHQQFLAGMQ
Sbjct: 121 AYPPEVLNELHQQFLAGMQ 139

[Close]

BLAST of Carg22689 vs. NCBI nr
Match: XP_023006039.1 (transcription factor LHW-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 5.5e-75
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPL
Sbjct: 1   MGLLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQLLPSFESSGNGSSKLLPL 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
           EDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD
Sbjct: 61  EDWEGCSSMQQANQVEGKLFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
           AYPPEVLNELHQQFLAGMQ
Sbjct: 121 AYPPEVLNELHQQFLAGMQ 139

[Close]

BLAST of Carg22689 vs. NCBI nr
Match: XP_023006047.1 (transcription factor LHW-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 5.5e-75
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG LLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPL
Sbjct: 1   MGLLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQLLPSFESSGNGSSKLLPL 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
           EDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD
Sbjct: 61  EDWEGCSSMQQANQVEGKLFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
           AYPPEVLNELHQQFLAGMQ
Sbjct: 121 AYPPEVLNELHQQFLAGMQ 139

[Close]

BLAST of Carg22689 vs. NCBI nr
Match: XP_023530502.1 (transcription factor LHW-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 5.5e-75
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ LPSFESSGNGSSKLLPL
Sbjct: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQLLPSFESSGNGSSKLLPL 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
           EDWEGCSSMQQANQVEG+LFSLMKQMMCSKQISLVGEGIVGRAAFTG HQWILSSDSTRD
Sbjct: 61  EDWEGCSSMQQANQVEGKLFSLMKQMMCSKQISLVGEGIVGRAAFTGKHQWILSSDSTRD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
           AYPPEVLNELHQQFLAGMQ
Sbjct: 121 AYPPEVLNELHQQFLAGMQ 139

[Close]

BLAST of Carg22689 vs. NCBI nr
Match: XP_023516136.1 (transcription factor LHW-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 8.5e-60
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           M F LKETLKALCGSNQW YAVFWKIGCQN KLLIWEECHYQ LPSFESSG+GSSK LPL
Sbjct: 1   MRFSLKETLKALCGSNQWCYAVFWKIGCQNSKLLIWEECHYQLLPSFESSGSGSSK-LPL 60

Query: 61  EDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILS 120
            +WEGC      SS QQAN+V+ +L+SL+ +MM +KQISLVGEGIVGRAAFTGNHQWILS
Sbjct: 61  GEWEGCWGYSQSSSSQQANRVDDKLYSLINKMMLNKQISLVGEGIVGRAAFTGNHQWILS 120

Query: 121 SDSTRDAYPPEVLNELHQQFLAGMQ 140
           S+ TRDAYPPEVLNELHQQFLAGMQ
Sbjct: 121 SNYTRDAYPPEVLNELHQQFLAGMQ 144

[Close]

BLAST of Carg22689 vs. TAIR10
Match: AT2G27230.1 (transcription factor-related)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-33
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG LL+E L+++C +NQWSYAVFWKIGCQN  LLIWEEC+ +     ESS N        
Sbjct: 1   MGVLLREALRSMCVNNQWSYAVFWKIGCQNSSLLIWEECYNE----TESSSNPRRLCGLG 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
            D +G   +Q           L  +MM + +I LVGEG+VGRAAFTG+HQWIL++   RD
Sbjct: 61  VDTQGNEKVQ----------LLTNRMMLNNRIILVGEGLVGRAAFTGHHQWILANSFNRD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
            +PPEV+NE+  QF AG+Q
Sbjct: 121 VHPPEVINEMLLQFSAGIQ 125

[Close]

BLAST of Carg22689 vs. TAIR10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 40/139 (28.78%), Postives = 64/139 (46.04%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG+ L++ L+++C +  W+YAVFWK+   +P +L  E+ +           N    L+P 
Sbjct: 1   MGYTLQQILRSICSNTDWNYAVFWKLNHHSPMVLTLEDVY---------CVNHERGLMP- 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
                  S+         L   + +M  S  +  +GEGIVG+ A +G HQWI S      
Sbjct: 61  ------ESLHGGRHAHDPLGLAVAKM--SYHVHSLGEGIVGQVAISGQHQWIFSEYLNDS 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
               +V N    Q  AG++
Sbjct: 121 HSTLQVHNGWESQISAGIK 121

[Close]

BLAST of Carg22689 vs. TAIR10
Match: AT1G64625.1 (Serine/threonine-protein kinase WNK (With No Lysine)-related)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 39/140 (27.86%), Postives = 59/140 (42.14%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG   K  LK+LC S+ WSYAVFW+    N  +L +EE +                    
Sbjct: 1   MGSEYKHILKSLCLSHGWSYAVFWRYDPINSMILRFEEAYN------------------- 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
                          + +  +L+  M+   Q  ++G+GIVG  A +GNHQW+ S    + 
Sbjct: 61  ---------------DEQSVALVDDMVL--QAPILGQGIVGEVASSGNHQWLFSDTLFQW 98

Query: 121 AYPPEVLNELHQQFLAGMQV 141
            +      E   QFL G ++
Sbjct: 121 EH------EFQNQFLCGFKI 98

[Close]

BLAST of Carg22689 vs. TAIR10
Match: AT2G31280.3 (conserved peptide upstream open reading frame 7)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08
Identity = 38/140 (27.14%), Postives = 61/140 (43.57%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKL-LIWEECHYQHLPSFESSGNGSSKLLP 60
           MG   +E LK+ C +  W YAVFW++  +  ++ L  E+ +Y H        +G      
Sbjct: 1   MGSTSQEILKSFCFNTDWDYAVFWQLNHRGSRMVLTLEDAYYDH--------HG------ 60

Query: 61  LEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTR 120
                  ++M  A+   G   + M     S  +  +GEGIVG+ A +G HQW+   +   
Sbjct: 61  -------TNMHGAHDPLGLAVAKM-----SYHVYSLGEGIVGQVAVSGEHQWVFPENYNN 114

Query: 121 DAYPPEVLNELHQQFLAGMQ 140
                E  N    Q  AG++
Sbjct: 121 CNSAFEFHNVWESQISAGIK 114

[Close]

BLAST of Carg22689 vs. TAIR10
Match: AT1G63650.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.8e-04
Identity = 31/145 (21.38%), Postives = 56/145 (38.62%), Query Frame = 0


Query: 5   LKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECH------------------------ 64
           LK+ L     + QWSY +FW +    P +L W + +                        
Sbjct: 13  LKKQLAVSVRNIQWSYGIFWSVSASQPGVLEWGDGYYNGDIKTRKTIQAAEVKIDQLGLE 72

Query: 65  --------YQHLPSFESSGNGSSKLLPLEDWEGCSSMQQANQVEGELFSLMKQMMCSKQI 118
                   Y+ L   ESS +GSS++         +++   +  + E + L    +C   +
Sbjct: 73  RSEQLRELYESLSLAESSASGSSQVTRR---ASAAALSPEDLTDTEWYYL----VCMSFV 132

[Close]

BLAST of Carg22689 vs. Swiss-Prot
Match: sp|Q9XIN0|LHW_ARATH (Transcription factor LHW OS=Arabidopsis thaliana OX=3702 GN=LHW PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-32
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG LL+E L+++C +NQWSYAVFWKIGCQN  LLIWEEC+ +     ESS N        
Sbjct: 1   MGVLLREALRSMCVNNQWSYAVFWKIGCQNSSLLIWEECYNE----TESSSNPRRLCGLG 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
            D +G   +Q           L  +MM + +I LVGEG+VGRAAFTG+HQWIL++   RD
Sbjct: 61  VDTQGNEKVQ----------LLTNRMMLNNRIILVGEGLVGRAAFTGHHQWILANSFNRD 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
            +PPEV+NE+  QF AG+Q
Sbjct: 121 VHPPEVINEMLLQFSAGIQ 125

[Close]

BLAST of Carg22689 vs. Swiss-Prot
Match: sp|P0C7P8|LHWL1_ARATH (Transcription factor EMB1444 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 40/139 (28.78%), Postives = 64/139 (46.04%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG+ L++ L+++C +  W+YAVFWK+   +P +L  E+ +           N    L+P 
Sbjct: 1   MGYTLQQILRSICSNTDWNYAVFWKLNHHSPMVLTLEDVY---------CVNHERGLMP- 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
                  S+         L   + +M  S  +  +GEGIVG+ A +G HQWI S      
Sbjct: 61  ------ESLHGGRHAHDPLGLAVAKM--SYHVHSLGEGIVGQVAISGQHQWIFSEYLNDS 120

Query: 121 AYPPEVLNELHQQFLAGMQ 140
               +V N    Q  AG++
Sbjct: 121 HSTLQVHNGWESQISAGIK 121

[Close]

BLAST of Carg22689 vs. Swiss-Prot
Match: sp|Q7XJU0|LHWL2_ARATH (Transcription factor bHLH157 OS=Arabidopsis thaliana OX=3702 GN=BHLH157 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 39/140 (27.86%), Postives = 59/140 (42.14%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MG   K  LK+LC S+ WSYAVFW+    N  +L +EE +                    
Sbjct: 1   MGSEYKHILKSLCLSHGWSYAVFWRYDPINSMILRFEEAYN------------------- 60

Query: 61  EDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTRD 120
                          + +  +L+  M+   Q  ++G+GIVG  A +GNHQW+ S    + 
Sbjct: 61  ---------------DEQSVALVDDMVL--QAPILGQGIVGEVASSGNHQWLFSDTLFQW 98

Query: 121 AYPPEVLNELHQQFLAGMQV 141
            +      E   QFL G ++
Sbjct: 121 EH------EFQNQFLCGFKI 98

[Close]

BLAST of Carg22689 vs. Swiss-Prot
Match: sp|Q58G01|LHWL3_ARATH (Transcription factor bHLH155 OS=Arabidopsis thaliana OX=3702 GN=BHLH155 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-07
Identity = 38/140 (27.14%), Postives = 61/140 (43.57%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKL-LIWEECHYQHLPSFESSGNGSSKLLP 60
           MG   +E LK+ C +  W YAVFW++  +  ++ L  E+ +Y H        +G      
Sbjct: 1   MGSTSQEILKSFCFNTDWDYAVFWQLNHRGSRMVLTLEDAYYDH--------HG------ 60

Query: 61  LEDWEGCSSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILSSDSTR 120
                  ++M  A+   G   + M     S  +  +GEGIVG+ A +G HQW+   +   
Sbjct: 61  -------TNMHGAHDPLGLAVAKM-----SYHVYSLGEGIVGQVAVSGEHQWVFPENYNN 114

Query: 121 DAYPPEVLNELHQQFLAGMQ 140
                E  N    Q  AG++
Sbjct: 121 CNSAFEFHNVWESQISAGIK 114

[Close]

BLAST of Carg22689 vs. TrEMBL
Match: tr|A0A0A0LXL1|A0A0A0LXL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G632370 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.4e-55
Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MGFLLKE LKALCGSNQWSYAVFWKIGCQN KLLIWEECHYQ LPSF+SSG+GSSK  PL
Sbjct: 1   MGFLLKEMLKALCGSNQWSYAVFWKIGCQNTKLLIWEECHYQPLPSFDSSGSGSSK-FPL 60

Query: 61  EDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILS 120
            + EGC      SS  QAN  E +L+SL+ +M  +K ISLVGEGIVGRAAFTGNH WILS
Sbjct: 61  GELEGCWGYSQSSSSFQANHGEDKLYSLIHKMTLNKHISLVGEGIVGRAAFTGNHLWILS 120

Query: 121 SDSTRDAYPPEVLNELHQQFLAGMQ 140
           S+ TRDAYPPEVL+ELHQQFLAGMQ
Sbjct: 121 SNYTRDAYPPEVLSELHQQFLAGMQ 144

[Close]

BLAST of Carg22689 vs. TrEMBL
Match: tr|A0A1S3BPX0|A0A1S3BPX0_CUCME (transcription factor LHW OS=Cucumis melo OX=3656 GN=LOC103491943 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-52
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSFESSGNGSSKLLPL 60
           MGFLLKE LKALCGS+QWSYAVFWKIGCQN KLLIWEECHYQ LPSF+SSG+ SSK  PL
Sbjct: 1   MGFLLKEMLKALCGSSQWSYAVFWKIGCQNTKLLIWEECHYQPLPSFDSSGSESSK-FPL 60

Query: 61  EDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWILS 120
            + EGC      SS  Q+N  E +L+SL+ +M  +K +SLVGEGIVGRAAF GNH WILS
Sbjct: 61  GELEGCWGYSQSSSSLQSNHGEDKLYSLIHKMNLNKHVSLVGEGIVGRAAFIGNHLWILS 120

Query: 121 SDSTRDAYPPEVLNELHQQFLAGMQ 140
           S+ TRDAYPPEVL+ELHQQFLAGMQ
Sbjct: 121 SNYTRDAYPPEVLSELHQQFLAGMQ 144

[Close]

BLAST of Carg22689 vs. TrEMBL
Match: tr|F6HAC3|F6HAC3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g00440 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.3e-45
Identity = 92/148 (62.16%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSF---ESSGNGSSKL 60
           MGFLLKE LK+LCG NQWSYAVFWKIGCQNPKLLIWEECH + +PS      SG  +S+ 
Sbjct: 1   MGFLLKEALKSLCGVNQWSYAVFWKIGCQNPKLLIWEECHCEFIPSSGLPHGSGMENSE- 60

Query: 61  LPLEDWEGCSSMQQA--NQVEGE----LFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQW 120
           +P EDWEGC    +   +Q++G+    ++ L+ +MM + Q+++VGEGIVGRAAFTG HQW
Sbjct: 61  VPFEDWEGCWVFPETRISQLDGQAVESIYFLVNKMMMNNQVNIVGEGIVGRAAFTGKHQW 120

Query: 121 ILSSDSTRDAYPPEVLNELHQQFLAGMQ 140
           ILS + TRDA+PPEVLNE+H QF AGMQ
Sbjct: 121 ILSENYTRDAHPPEVLNEVHHQFSAGMQ 147

[Close]

BLAST of Carg22689 vs. TrEMBL
Match: tr|A5B9A8|A5B9A8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034321 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.8e-45
Identity = 92/148 (62.16%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQHLPSF---ESSGNGSSKL 60
           MGFLLKE LK+LCG NQWSYAVFWKIGCQNPKLLIWEECH + +PS      SG  +S+ 
Sbjct: 1   MGFLLKEALKSLCGVNQWSYAVFWKIGCQNPKLLIWEECHCEFIPSSGLPHGSGMENSE- 60

Query: 61  LPLEDWEGC--SSMQQANQVEGE----LFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQW 120
           +P EDWEGC      + +Q++G+    ++ L+ +MM + Q+++VGEGIVGRAAFTG HQW
Sbjct: 61  VPFEDWEGCWVXPETRISQLDGQAVESIYFLVNKMMMNNQVNIVGEGIVGRAAFTGKHQW 120

Query: 121 ILSSDSTRDAYPPEVLNELHQQFLAGMQ 140
           ILS + TRDA+PPEVLNE+H QF AGMQ
Sbjct: 121 ILSENYTRDAHPPEVLNEVHHQFSAGMQ 147

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BLAST of Carg22689 vs. TrEMBL
Match: tr|M5WRK5|M5WRK5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G144300 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 89/147 (60.54%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 1   MGFLLKETLKALCGSNQWSYAVFWKIGCQNPKLLIWEECHYQ-HLPSFESSGNGSSKL-L 60
           MG LLK+ LK LCGSNQW+YAVFWKIGCQNPKLLIW ECHY+  + S      G+ +  L
Sbjct: 1   MGLLLKQALKTLCGSNQWAYAVFWKIGCQNPKLLIW-ECHYEPSICSLPKRIAGTERAEL 60

Query: 61  PLEDWEGC------SSMQQANQVEGELFSLMKQMMCSKQISLVGEGIVGRAAFTGNHQWI 120
           P  +WEGC       S     Q E  + SL+ +MM  K  ++VGEGIVGRAAFTGNHQWI
Sbjct: 61  PFGEWEGCWVSSEVCSSSNGIQPEERVSSLINRMMMDKPFNIVGEGIVGRAAFTGNHQWI 120

Query: 121 LSSDSTRDAYPPEVLNELHQQFLAGMQ 140
           LSS+ T+DA+PPEVLNE+H QF AGMQ
Sbjct: 121 LSSNYTKDAHPPEVLNEMHHQFSAGMQ 146

The following BLAST results are available for this feature:

BLAST of Carg22689 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930928.1	1.3e-76	98.56	transcription factor LHW-like [Cucurbita moschata]	[more]
XP_023006039.1	5.5e-75	97.84	transcription factor LHW-like isoform X1 [Cucurbita maxima]	[more]
XP_023006047.1	5.5e-75	97.84	transcription factor LHW-like isoform X2 [Cucurbita maxima]	[more]
XP_023530502.1	5.5e-75	97.84	transcription factor LHW-like [Cucurbita pepo subsp. pepo]	[more]
XP_023516136.1	8.5e-60	80.69	transcription factor LHW-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22689 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27230.1	2.2e-33	51.08	transcription factor-related	[more]
AT1G06150.1	1.4e-11	28.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G64625.1	1.4e-08	27.86	Serine/threonine-protein kinase WNK (With No Lysine)-related	[more]
AT2G31280.3	5.4e-08	27.14	conserved peptide upstream open reading frame 7	[more]
AT1G63650.1	2.8e-04	21.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg22689 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIN0\|LHW_ARATH	3.9e-32	51.08	Transcription factor LHW OS=Arabidopsis thaliana OX=3702 GN=LHW PE=1 SV=1	[more]
sp\|P0C7P8\|LHWL1_ARATH	2.5e-10	28.78	Transcription factor EMB1444 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=...	[more]
sp\|Q7XJU0\|LHWL2_ARATH	2.5e-07	27.86	Transcription factor bHLH157 OS=Arabidopsis thaliana OX=3702 GN=BHLH157 PE=1 SV=...	[more]
sp\|Q58G01\|LHWL3_ARATH	9.7e-07	27.14	Transcription factor bHLH155 OS=Arabidopsis thaliana OX=3702 GN=BHLH155 PE=1 SV=...	[more]

BLAST of Carg22689 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXL1\|A0A0A0LXL1_CUCSA	5.4e-55	76.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G632370 PE=4 SV=1	[more]
tr\|A0A1S3BPX0\|A0A1S3BPX0_CUCME	2.5e-52	73.10	transcription factor LHW OS=Cucumis melo OX=3656 GN=LOC103491943 PE=4 SV=1	[more]
tr\|F6HAC3\|F6HAC3_VITVI	1.3e-45	62.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g00440 PE=4 SV=...	[more]
tr\|A5B9A8\|A5B9A8_VITVI	1.8e-45	62.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034321 PE=4 SV=1	[more]
tr\|M5WRK5\|M5WRK5_PRUPE	1.2e-41	60.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G144300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0048364	root development

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR033260	LHW
IPR025610	MYC/MYB_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22689-RA	Carg22689-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025610	Transcription factor MYC/MYB N-terminal	PFAM	PF14215	bHLH-MYC_N	coord: 5..120 e-value: 2.8E-20 score: 73.2
None	No IPR available	PANTHER	PTHR13902	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	coord: 1..139
IPR033260	Transcription factor LHW	PANTHER	PTHR13902:SF66	TRANSCRIPTION FACTOR LHW	coord: 1..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22689	CmaCh11G009040	Cucurbita maxima (Rimu)	carcmaB0749

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22689	Silver-seed gourd	carcarB502
Carg22689	Cucumber (Gy14) v2	carcgybB0542
Carg22689	Cucumber (Gy14) v1	carcgyB0613
Carg22689	Cucurbita maxima (Rimu)	carcmaB0748
Carg22689	Cucurbita moschata (Rifu)	carcmoB0726
Carg22689	Cucurbita moschata (Rifu)	carcmoB0727
Carg22689	Cucurbita pepo (Zucchini)	carcpeB0757
Carg22689	Cucurbita pepo (Zucchini)	carcpeB0758
Carg22689	Wild cucumber (PI 183967)	carcpiB0571
Carg22689	Cucumber (Chinese Long) v2	carcuB0565
Carg22689	Cucumber (Chinese Long) v3	carcucB0573
Carg22689	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22689	Bottle gourd (USVL1VR-Ls)	carlsiB486
Carg22689	Melon (DHL92) v3.5.1	carmeB0541
Carg22689	Melon (DHL92) v3.6.1	carmedB0546
Carg22689	Watermelon (Charleston Gray)	carwcgB0520
Carg22689	Watermelon (Charleston Gray)	carwcgB0521
Carg22689	Watermelon (97103) v1	carwmB0532
Carg22689	Watermelon (97103) v2	carwmbB0561
Carg22689	Watermelon (97103) v2	carwmbB0562
Carg22689	Wax gourd	carwgoB0645