Carg22239 (gene) Silver-seed gourd

Overview
NameCarg22239
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionhigh mobility group B protein 6
LocationCucurbita_argyrosperma_scaffold_174 : 253540 .. 256739 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAGTCTTCAATCTGAATAATTGATTTTAATTTTGAAAAGAAAAGAAAAAAAAAAAGATCCGACCGTTGAGCTTCACCTCTCTATAAAAGGGACCCTCTTCATTACAGAGTTTTTACAATACGCCTGAAGCCCTCCCCTGCTCTCTGCTCTGCTCCCGTTCCCATCTATCTCCGATGGCTTCCACTGCTGAAATTCCGAAGACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACGAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAACCGAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGACATGCTTCAACAGTTGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATATGGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTACTATGGTTCGTTTCTTAATCTCTTGTGTCTCTCTTGTGTTTCTTTCAGATTCTTGCTTACTGAGAAGAACTAAACAAGAAATGTTAGTTAATCCGAGATGGATCGTCGGATCTCTTTAGGTTTTAGTTTCTAATTGTTGAAATTTTTTCTTCTGAATCAGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAGAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGGTAGATATAAACTGCTGATAATTCATGGTTATAATACCTGTTACCTGTCAATTGCTCTTGAATTTCATGTTTACGGATTTTGTCCTCTAATTCAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCAAACATTTTGGGGGCAAAGTGGAAGAATGTCACTGCAGATGAGAAGAAGCCATACGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAATCACTTCTAAAGAGAAGCGTGAGAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAGGCTGAGAAAGAGAACAAGAAGAAGAAGTAAGAACCACTTTCACTCTATCTTCACACTATGTTAATTTTCAAGTGCCTTACAGATGTTTGATAAAATGCCCCTTAGGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGAAACAGAGAGGTCCTTACGAAGAGGTTAGCACACTTACCAAAAACAGATTTCTTCTTCATATTTTCATCCAAGATCGATATTATTAACTCCTGAGAATTTGCAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCAGCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGGTAGAAGAAGATGATTTTTAAATCTTTTTGTCATAATATCCCTGGATTAGCCATTGACATGAGTTTCTGAATGTGGGATGGCAAACAAAAAACAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCTAAGAAGCCTGCATCCTCTTACATCCTGTTCAGGTTGAAAAAAATAAATCAACCCCTCTCTAAATTGCTGCATTTGAAGAGGTTTATATGCATATACTGAGCTGGTTTCTTGTTCAACTGCAGCAAAGAAGCTAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGTTTGGACTTTAATGATTCAAATATTTTTATTGTTTTATAAACATTTTTTGGGTGTGCTGAGAAAGGGTCTGTTCTTCTGATTTGGATGATTCAAATCTTTTTGTTGTTTTTAAAACATTTTGGAATTCTGGGTGCGCTGATTAATGGTCTGTTCTTCTGATTTGGTTTGGGCTTGATGATTTTGTCTTTTTGTTGTTTTTTTAAAACATCTTAGAATTCTGGGTGTGCTGAAAATGGTCTGTTCTTCTTGTTTTGGTTAAGAATGAGAAATAAAATTAGGATCAAAGTAAACATACACTCTCTCAAAGTCAGGTAGACAATTTGAGTGTTATTGACCTATGGAGTGTGAACCTACACTCCCTATTTTCACTGCTAGGAAGACAAGTGTTACACTCTATTCTTTAACGCGTATAATATTTAAAGCTTATAATATCAAATTTTCATTCTTAACGGTTAGGTTATAATATCATATTTGAAGCTATAATATCAAATTTTCATTCCTAACGGTATTTAATGGACTGTATTTCTGATTTGGTGGGAGTGAACAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGATAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAATTGGAGGAATACAACAAAACTGTAGGTTAAATGAAGGGCTGAGGGAATCTGATTGGTTCGGTTCTTCACGGTTCAAATGTTGTTTGAACAGAGTCAGTTCCTAACAACGACTTGTTTTGATTAGTTGCTGCTAATCTTGTCTTCCTTCTCTAATTAGTTTGTCAGATTATTTTATTTTATTTTATGCTGATGATTTCTAGAGCTCTTTCACTCAATGTAAATTGTGTATGTTGAACACAATTTTAATTTTTAAACTCGCTCACACACACTCTTCCGCCGATCTTAGGAATGTATGTTGGAGCACAATTCTTAGTGGTAAACACTCGCACACACTACGTAGAAATTATTCCATTCGAATTCTTGGAATGAAATTAGTGTCTAGAGTATTTATATTAGAGTCTATAATTTATTATTAAATTATTTTATCAAGTATTTTAATTCTTAAAATATCTAATTTATTACT

mRNA sequence

AAAACAAGTCTTCAATCTGAATAATTGATTTTAATTTTGAAAAGAAAAGAAAAAAAAAAAGATCCGACCGTTGAGCTTCACCTCTCTATAAAAGGGACCCTCTTCATTACAGAGTTTTTACAATACGCCTGAAGCCCTCCCCTGCTCTCTGCTCTGCTCCCGTTCCCATCTATCTCCGATGGCTTCCACTGCTGAAATTCCGAAGACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACGAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAACCGAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGACATGCTTCAACAGTTGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATATGGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTACTATGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAGAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCAAACATTTTGGGGGCAAAGTGGAAGAATGTCACTGCAGATGAGAAGAAGCCATACGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAATCACTTCTAAAGAGAAGCGTGAGAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAGGCTGAGAAAGAGAACAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGAAACAGAGAGGTCCTTACGAAGAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCAGCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCTAAGAAGCCTGCATCCTCTTACATCCTGTTCAGCAAAGAAGCTAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGATAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAATTGGAGGAATACAACAAAACTGTAGGTTAAATGAAGGGCTGAGGGAATCTGATTGGTTCGGTTCTTCACGGTTCAAATGTTGTTTGAACAGAGTCAGTTCCTAACAACGACTTGTTTTGATTAGTTGCTGCTAATCTTGTCTTCCTTCTCTAATTAGTTTGTCAGATTATTTTATTTTATTTTATGCTGATGATTTCTAGAGCTCTTTCACTCAATGTAAATTGTGTATGTTGAACACAATTTTAATTTTTAAACTCGCTCACACACACTCTTCCGCCGATCTTAGGAATGTATGTTGGAGCACAATTCTTAGTGGTAAACACTCGCACACACTACGTAGAAATTATTCCATTCGAATTCTTGGAATGAAATTAGTGTCTAGAGTATTTATATTAGAGTCTATAATTTATTATTAAATTATTTTATCAAGTATTTTAATTCTTAAAATATCTAATTTATTACT

Coding sequence (CDS)

ATGGCTTCCACTGCTGAAATTCCGAAGACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACGAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAACCGAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGACATGCTTCAACAGTTGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATATGGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTACTATGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAGAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCAAACATTTTGGGGGCAAAGTGGAAGAATGTCACTGCAGATGAGAAGAAGCCATACGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAATCACTTCTAAAGAGAAGCGTGAGAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAGGCTGAGAAAGAGAACAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGAAACAGAGAGGTCCTTACGAAGAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCAGCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCTAAGAAGCCTGCATCCTCTTACATCCTGTTCAGCAAAGAAGCTAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGATAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAATTGGAGGAATACAACAAAACTGTAGGTTAA

Protein sequence

MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKPKSKAAPKKQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLKAKDEMLKQKDEELKTRDMEQEKLQIELKKLQKLKEFKPTMNFPMIQILKDKEQEKKEKKKCAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKKKKEKDPLKPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKQQKEEEAAILKKEEEEQMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTVG
Homology
[Close]
BLAST of Carg22239 vs. NCBI nr
Match: XP_022931308.1 (high mobility group B protein 6-like [Cucurbita moschata] >XP_022931309.1 high mobility group B protein 6-like [Cucurbita moschata])

HSP 1 Score: 615.1 bits (1585), Expect = 2.0e-172
Identity = 470/481 (97.71%), Postives = 471/481 (97.92%), Query Frame = 0 

Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60
           MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP
Sbjct: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60

Query: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120
           KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQW 180
           XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQ        +E KRPSPPYILWCKDQW
Sbjct: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQEKKEKKKCSENKRPSPPYILWCKDQW 180

Query: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX 240
           NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX
Sbjct: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX 240

Query: 241 XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300
           XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL
Sbjct: 241 XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300

Query: 301 AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXX 360
           AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXX
Sbjct: 301 AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420

Query: 421 KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 480
           KEARKSVMEERPGANNSTVNALISVKWKELSE ERKMWNDKAAEAMDAYRKELEEYNKTV
Sbjct: 421 KEARKSVMEERPGANNSTVNALISVKWKELSERERKMWNDKAAEAMDAYRKELEEYNKTV 480

Query: 481 G 482
           G
Sbjct: 481 G 481

[Close]
BLAST of Carg22239 vs. NCBI nr
Match: XP_023551962.1 (high mobility group B protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 615.1 bits (1585), Expect = 2.0e-172
Identity = 472/481 (98.13%), Postives = 475/481 (98.75%), Query Frame = 0 

Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60
           MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEI+LS+NQSSAKKP
Sbjct: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEIVLSRNQSSAKKP 60

Query: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120
           KS   P  QPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  KSKAAPKKQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQW 180
           XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQW
Sbjct: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQW 180

Query: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX 240
           NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX
Sbjct: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX 240

Query: 241 XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300
           XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL
Sbjct: 241 XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300

Query: 301 AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXX 360
           AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEME+Y XXXXXXXXXXXXX
Sbjct: 301 AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEMYXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420

Query: 421 KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 480
           KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV
Sbjct: 421 KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 480

Query: 481 G 482
           G
Sbjct: 481 G 481

[Close]
BLAST of Carg22239 vs. NCBI nr
Match: XP_022985391.1 (high mobility group B protein 6-like [Cucurbita maxima] >XP_022985393.1 high mobility group B protein 6-like [Cucurbita maxima])

HSP 1 Score: 510.8 bits (1314), Expect = 5.2e-141
Identity = 427/481 (88.77%), Postives = 431/481 (89.60%), Query Frame = 0 

Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60
           MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSS    
Sbjct: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSXXXX 60

Query: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120
             XXX XX                                XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQW 180
           XXXXXXXXXXXXKLKEFKP MNFPMIQILKDKE XXXXXXXX     PSPPYILWCKDQW
Sbjct: 121 XXXXXXXXXXXXKLKEFKPIMNFPMIQILKDKEXXXXXXXXXXXXXXPSPPYILWCKDQW 180

Query: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMX 240
           NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQ+TSKEKRESEAM 
Sbjct: 181 NEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRESEAMK 240

Query: 241 XXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300
            XXXXXXXXXXXXXXX YLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL
Sbjct: 241 LXXXXXXXXXXXXXXXQYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLL 300

Query: 301 AENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXX 360
           AENKNVLEVAKITGEEWKNMTE+QRGPYEEMARKNKEKYMQEMEIYK XXXXXXXXXXXX
Sbjct: 301 AENKNVLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFS 420

Query: 421 KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 480
           KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWN+KAAEAMDAYRKE+EEYNKTV
Sbjct: 421 KEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEEYNKTV 480

Query: 481 G 482
           G
Sbjct: 481 G 481

[Close]
BLAST of Carg22239 vs. NCBI nr
Match: XP_004149754.1 (PREDICTED: high mobility group B protein 6 [Cucumis sativus] >KGN53391.1 Transcription factor [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 5.2e-133
Identity = 395/471 (83.86%), Postives = 421/471 (89.38%), Query Frame = 0 

Query: 10  TKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKPKSXXXPXXQ 69
           TKKPRNSRKALKDKNS+PE PQS+ SMV KVT PSE EI LSQNQ+SAKKPKS      Q
Sbjct: 19  TKKPRNSRKALKDKNSSPEVPQSQ-SMVPKVTAPSEGEI-LSQNQTSAKKPKSKAAAKKQ 78

Query: 70  PAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 129
           PA QSFDK+LQEMQDMLQQL+LDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 79  PANQSFDKDLQEMQDMLQQLKLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138

Query: 130 XXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQWNEIKKENPE 189
           XXXKLKEFKPTMNFPMIQI KDKEQ        AEKKRP+PPYILWCKDQWNEIKKENPE
Sbjct: 139 XXXKLKEFKPTMNFPMIQIFKDKEQDKKEKKKCAEKKRPAPPYILWCKDQWNEIKKENPE 198

Query: 190 AEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMXXXXXXXXXX 249
           A+FKE SNILGAKWK ++A+EKKPYEE+YQAEK+ YL+ITSKEKRESEA XXXXXXXXXX
Sbjct: 199 ADFKETSNILGAKWKTISAEEKKPYEEKYQAEKETYLRITSKEKRESEAXXXXXXXXXXX 258

Query: 250 XXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLLAENKNVLEV 309
           XXXXXXXX        XXXXXXXXXXXX       MSAFFLFSNERRASL+AENKNV+E+
Sbjct: 259 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSAFFLFSNERRASLVAENKNVVEL 318

Query: 310 AKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXXXXXX 369
           AKI GEEWKNMTE+Q+GPYEEMA+KNKEKYMQEMEIY XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 319 AKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYXXXXXXXXXXXXXXXXXXXXXXX 378

Query: 370 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFSKEARKSVME 429
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VDPNKPKKPASSYILFSKEARKSVME
Sbjct: 379 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNPVDPNKPKKPASSYILFSKEARKSVME 438

Query: 430 ERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 481
           E+PG +NSTVNALISVKWKELSE ERK+WNDKAAEAM+ Y+KE+EEYNK+V
Sbjct: 439 EKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEGYKKEVEEYNKSV 487

[Close]
BLAST of Carg22239 vs. NCBI nr
Match: XP_008451961.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo])

HSP 1 Score: 483.0 bits (1242), Expect = 1.2e-132
Identity = 398/486 (81.89%), Postives = 427/486 (87.86%), Query Frame = 0 

Query: 2   ASTAEIP-------KTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQ 61
           ++T E+P        TKKPRNSRKALKDKNS+PE PQS+ SMVTKVT PSE EI LSQNQ
Sbjct: 4   STTVELPVSGAPAVPTKKPRNSRKALKDKNSSPEVPQSQ-SMVTKVTTPSEGEI-LSQNQ 63

Query: 62  SSAKKPKSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXX 121
           SSAKKPKS      QPAKQSFDK+LQEMQDMLQQL+LDKEKTEEL XXXXXXXXXXXXXX
Sbjct: 64  SSAKKPKSKAAAKKQPAKQSFDKDLQEMQDMLQQLKLDKEKTEELXXXXXXXXXXXXXXX 123

Query: 122 XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYIL 181
           XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQ        AEKKRP+ PYIL
Sbjct: 124 XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQDKKEKKKCAEKKRPAQPYIL 183

Query: 182 WCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKR 241
           WCKDQWNEIKKENPEA+FKE SNILGAKWK + A+EKKPYEE+YQAEK+ YL+ITS+EKR
Sbjct: 184 WCKDQWNEIKKENPEADFKETSNILGAKWKTIPAEEKKPYEEKYQAEKETYLRITSREKR 243

Query: 242 ESEAMXXXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNE 301
           ESEA XXXXXXXXXXXXXXXXXX        XXXXXXXXXXXX        SAFFLFSNE
Sbjct: 244 ESEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFLFSNE 303

Query: 302 RRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXX 361
           RRASL+AENKN++E+AKI GEEWKNMTE+Q+GPYEEMA+KNKEKYMQEMEIY XXXXXXX
Sbjct: 304 RRASLVAENKNIVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYXXXXXXXX 363

Query: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPAS 421
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VDPNKPKKPAS
Sbjct: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNPVDPNKPKKPAS 423

Query: 422 SYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELE 481
           SYILFSKEARKSVMEE+PG +NSTVNALISVKWKELSE ERK+WNDKAAEAM+AY+KE+E
Sbjct: 424 SYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEAYKKEVE 483

[Close]
BLAST of Carg22239 vs. TAIR10
Match: AT4G23800.1 (HMG (high mobility group) box protein)

HSP 1 Score: 312.4 bits (799), Expect = 4.9e-85
Identity = 279/483 (57.76%), Postives = 334/483 (69.15%), Query Frame = 0 

Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60
           MA+ A+   TKKPRNSRKALK KN   E P S  S+  K                SAK  
Sbjct: 1   MATNADPAPTKKPRNSRKALKQKNELVETPPSPVSVKGK----------------SAK-- 60

Query: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120
                        SF+++L EMQ ML++++++K       XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  -------------SFEQDLMEMQTMLEKMKIEKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQI----LKDKEQXXXXXXXXAEKKRPSPPYILWC 180
           XXXXXXXXXXXXK+KEFKP M F   Q      + ++          E KRPS  Y+LWC
Sbjct: 121 XXXXXXXXXXXXKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 180

Query: 181 KDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRES 240
           KDQW E+KKENPEA+FKE SNILGAKWK+++A++KKPYEERYQ EK+AYLQ+ +KEKRE 
Sbjct: 181 KDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREK 240

Query: 241 EAMXXXXXXXXXXXXXXXXXXYLQFKGEA-XXXXXXXXXXXXPLKPKHPMSAFFLFSNER 300
           EAM                  YL F  EA             PLKPKHP+SAF +++NER
Sbjct: 241 EAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANER 300

Query: 301 RASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXX 360
           RA+L  ENK+V+EVAKITGEEWKN+++K++ PYE++A+KNKE Y+Q ME YK        
Sbjct: 301 RAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYK----RTKE 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASS 420
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     PKKPASS
Sbjct: 361 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKPASS 420

Query: 421 YILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEE 479
           Y LFSK+ RK + EERPG NN+TV ALIS+KWKELSE E++++N KAA+ M+AY+KE+E 
Sbjct: 421 YFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA 448

[Close]
BLAST of Carg22239 vs. TAIR10
Match: AT4G11080.1 (HMG (high mobility group) box protein)

HSP 1 Score: 293.5 bits (750), Expect = 2.4e-79
Identity = 296/474 (62.45%), Postives = 344/474 (72.57%), Query Frame = 0 

Query: 11  KKPRNSRKALKDKNSTPE-EPQSESSMVTKVTQPSEEEILLSQNQSSAKKPKSXXXPXXQ 70
           KK RNSRKALK KN   E  P S+    TK                              
Sbjct: 12  KKSRNSRKALKQKNEIVESSPVSDKGKETK------------------------------ 71

Query: 71  PAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 130
               SF+K+L EMQ ML+++++         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 72  ----SFEKDLMEMQAMLEKMKI-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 131

Query: 131 XXXKLKEFKPTMNFPMIQILKDKE---QXXXXXXXXAEKKRPSPPYILWCKDQWNEIKKE 190
           XXXK+KEFKP M F   Q L   E    XXXXXX  AE KRPS PYILWCKD WNE+KK+
Sbjct: 132 XXXKMKEFKPNMTFAFSQSLAQTEXXXXXXXXXXDCAETKRPSTPYILWCKDNWNEVKKQ 191

Query: 191 NPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMXXXXXXX 250
           NPEA+FKE SNILGAKWK ++A+EKKPYEE+YQA+K+AYLQ+ +KEKRE EAM XXXXXX
Sbjct: 192 NPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKXXXXXX 251

Query: 251 XXXXXXXXXXXYLQFKGEA-XXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLLAENKN 310
           XXXXXXXXXX YL F  EA             PLKPK P+SA+ +++NERRA+L  ENK+
Sbjct: 252 XXXXXXXXXXQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKS 311

Query: 311 VLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXX 370
           V+EVAK+ GEEWKN++E+++ PY++MA+KNKE Y+QEME YK      XXXXXXXXXXXX
Sbjct: 312 VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYK--RTKEXXXXXXXXXXXX 371

Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFSKEARK 430
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       KP SSY LF K+ARK
Sbjct: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTSSYFLFCKDARK 431

Query: 431 SVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKT 480
           SV+EE PG NNSTV A IS+KW EL E E++++N KAAE M+AY+KE+EEYNKT
Sbjct: 432 SVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKT 442

[Close]
BLAST of Carg22239 vs. TAIR10
Match: AT1G20693.1 (high mobility group B2)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 278 PLKPKHPMSAFFLFSNERRASLLAE---NKNVLEVAKITGEEWKNMTEKQRGPYEEMARK 337
           P KPK P SAFF+F  + R +   E   NK+V  V K  G++WK++++ ++ PY   A K
Sbjct: 35  PNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEK 94

Query: 338 NKEKYMQEMEIY 347
            K +Y + ++ Y
Sbjct: 95  RKVEYEKNIKAY 106

[Close]
BLAST of Carg22239 vs. TAIR10
Match: AT3G28730.1 (high mobility group)

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-06
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 166 KRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAY 225
           KR    ++ + + + + IKKE+P   F E+  +LG KW+ ++AD+K+PYE + Q +KQ Y
Sbjct: 563 KRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRY 622

[Close]
BLAST of Carg22239 vs. TAIR10
Match: AT4G35570.1 (high mobility group B5)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 278 PLKPKHPMSAFFLFSNE-RRASLLA--ENKNVLEVAKITGEEWKNMTEKQRGPYEEMARK 337
           P +PK P S FF+F ++ R+   LA  +NK+V  V +  G++WK MTE++R P+   ++ 
Sbjct: 31  PNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQS 90

Query: 338 NKEKYMQEMEIY 347
            K +Y   M+ Y
Sbjct: 91  KKTEYAVTMQQY 102

[Close]
BLAST of Carg22239 vs. Swiss-Prot
Match: sp|Q9SUP7|HMGB6_ARATH (High mobility group B protein 6 OS=Arabidopsis thaliana OX=3702 GN=HMGB6 PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 8.9e-84
Identity = 279/483 (57.76%), Postives = 334/483 (69.15%), Query Frame = 0 

Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKP 60
           MA+ A+   TKKPRNSRKALK KN   E P S  S+  K                SAK  
Sbjct: 1   MATNADPAPTKKPRNSRKALKQKNELVETPPSPVSVKGK----------------SAK-- 60

Query: 61  KSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXX 120
                        SF+++L EMQ ML++++++K       XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  -------------SFEQDLMEMQTMLEKMKIEKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXKLKEFKPTMNFPMIQI----LKDKEQXXXXXXXXAEKKRPSPPYILWC 180
           XXXXXXXXXXXXK+KEFKP M F   Q      + ++          E KRPS  Y+LWC
Sbjct: 121 XXXXXXXXXXXXKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 180

Query: 181 KDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRES 240
           KDQW E+KKENPEA+FKE SNILGAKWK+++A++KKPYEERYQ EK+AYLQ+ +KEKRE 
Sbjct: 181 KDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREK 240

Query: 241 EAMXXXXXXXXXXXXXXXXXXYLQFKGEA-XXXXXXXXXXXXPLKPKHPMSAFFLFSNER 300
           EAM                  YL F  EA             PLKPKHP+SAF +++NER
Sbjct: 241 EAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANER 300

Query: 301 RASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXX 360
           RA+L  ENK+V+EVAKITGEEWKN+++K++ PYE++A+KNKE Y+Q ME YK        
Sbjct: 301 RAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYK----RTKE 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASS 420
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     PKKPASS
Sbjct: 361 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKPASS 420

Query: 421 YILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEE 479
           Y LFSK+ RK + EERPG NN+TV ALIS+KWKELSE E++++N KAA+ M+AY+KE+E 
Sbjct: 421 YFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA 448

[Close]
BLAST of Carg22239 vs. Swiss-Prot
Match: sp|Q9T012|HMG13_ARATH (High mobility group B protein 13 OS=Arabidopsis thaliana OX=3702 GN=HMGB13 PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.3e-78
Identity = 296/474 (62.45%), Postives = 344/474 (72.57%), Query Frame = 0 

Query: 11  KKPRNSRKALKDKNSTPE-EPQSESSMVTKVTQPSEEEILLSQNQSSAKKPKSXXXPXXQ 70
           KK RNSRKALK KN   E  P S+    TK                              
Sbjct: 12  KKSRNSRKALKQKNEIVESSPVSDKGKETK------------------------------ 71

Query: 71  PAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 130
               SF+K+L EMQ ML+++++         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 72  ----SFEKDLMEMQAMLEKMKI-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 131

Query: 131 XXXKLKEFKPTMNFPMIQILKDKE---QXXXXXXXXAEKKRPSPPYILWCKDQWNEIKKE 190
           XXXK+KEFKP M F   Q L   E    XXXXXX  AE KRPS PYILWCKD WNE+KK+
Sbjct: 132 XXXKMKEFKPNMTFAFSQSLAQTEXXXXXXXXXXDCAETKRPSTPYILWCKDNWNEVKKQ 191

Query: 191 NPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMXXXXXXX 250
           NPEA+FKE SNILGAKWK ++A+EKKPYEE+YQA+K+AYLQ+ +KEKRE EAM XXXXXX
Sbjct: 192 NPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKXXXXXX 251

Query: 251 XXXXXXXXXXXYLQFKGEA-XXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLLAENKN 310
           XXXXXXXXXX YL F  EA             PLKPK P+SA+ +++NERRA+L  ENK+
Sbjct: 252 XXXXXXXXXXQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKS 311

Query: 311 VLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXX 370
           V+EVAK+ GEEWKN++E+++ PY++MA+KNKE Y+QEME YK      XXXXXXXXXXXX
Sbjct: 312 VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYK--RTKEXXXXXXXXXXXX 371

Query: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFSKEARK 430
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       KP SSY LF K+ARK
Sbjct: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTSSYFLFCKDARK 431

Query: 431 SVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKT 480
           SV+EE PG NNSTV A IS+KW EL E E++++N KAAE M+AY+KE+EEYNKT
Sbjct: 432 SVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKT 442

[Close]
BLAST of Carg22239 vs. Swiss-Prot
Match: sp|P40618|HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus OX=9031 GN=HMGB3 PE=2 SV=3)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-11
Identity = 52/203 (25.62%), Postives = 80/203 (39.41%), Query Frame = 0 

Query: 278 PLKPKHPMSAFFLFSNERRASLLAENK----NVLEVAKITGEEWKNMTEKQRGPYEEMAR 337
           P KPK  MSA+  F    R     +N     N  E +K   E WK M+ K++  ++EMA+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAK 65

Query: 338 KNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 397
            +K +Y +EM+ Y                                               
Sbjct: 66  ADKVRYDREMKDY----------------------------------------------- 125

Query: 398 XXXXXXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEG 457
                      DPN PK+P S + LF  E R  +    PG +   V   +   W  LS+G
Sbjct: 126 -GPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDG 160

Query: 458 ERKMWNDKAAEAMDAYRKELEEY 477
           E++ +N+KAA+  + Y K++ +Y
Sbjct: 186 EKQPYNNKAAKLKEKYEKDVADY 160

[Close]
BLAST of Carg22239 vs. Swiss-Prot
Match: sp|Q32L31|HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus OX=9913 GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-09
Identity = 50/203 (24.63%), Postives = 78/203 (38.42%), Query Frame = 0 

Query: 278 PLKPKHPMSAFFLFSNERRASLLAENK----NVLEVAKITGEEWKNMTEKQRGPYEEMAR 337
           P KPK  MSA+  F    R     +N     N  E +K   E WK M+ K++  ++EMA+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65

Query: 338 KNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 397
            +K +Y +EM+ Y                                               
Sbjct: 66  ADKVRYDREMKDY----------------------------------------------- 125

Query: 398 XXXXXXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEG 457
                      DPN PK+P S + LF  E R  +    PG +   V   +   W  LS+ 
Sbjct: 126 -GPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDS 160

Query: 458 ERKMWNDKAAEAMDAYRKELEEY 477
           E++ + +KAA+  + Y K++ +Y
Sbjct: 186 EKQPYINKAAKLKEKYEKDVADY 160

[Close]
BLAST of Carg22239 vs. Swiss-Prot
Match: sp|O54879|HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus OX=10090 GN=Hmgb3 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-09
Identity = 50/203 (24.63%), Postives = 77/203 (37.93%), Query Frame = 0 

Query: 278 PLKPKHPMSAFFLFSNERRASLLAENK----NVLEVAKITGEEWKNMTEKQRGPYEEMAR 337
           P KPK  MSA+  F    R     +N     N  E +K   E WK M+ K++  ++EMA+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAK 65

Query: 338 KNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 397
            +K +Y +EM+ Y                                               
Sbjct: 66  ADKVRYDREMKDY----------------------------------------------- 125

Query: 398 XXXXXXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEG 457
                      DPN PK+P S + LF  E R  +    PG +   V   +   W  LS+ 
Sbjct: 126 -GPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDN 160

Query: 458 ERKMWNDKAAEAMDAYRKELEEY 477
           E++ +  KAA+  + Y K++ +Y
Sbjct: 186 EKQPYVTKAAKLKEKYEKDVADY 160

[Close]
BLAST of Carg22239 vs. TrEMBL
Match: tr|A0A0A0KZT4|A0A0A0KZT4_CUCSA (Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_4G051430 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.4e-133
Identity = 395/471 (83.86%), Postives = 421/471 (89.38%), Query Frame = 0 

Query: 10  TKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKPKSXXXPXXQ 69
           TKKPRNSRKALKDKNS+PE PQS+ SMV KVT PSE EI LSQNQ+SAKKPKS      Q
Sbjct: 19  TKKPRNSRKALKDKNSSPEVPQSQ-SMVPKVTAPSEGEI-LSQNQTSAKKPKSKAAAKKQ 78

Query: 70  PAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 129
           PA QSFDK+LQEMQDMLQQL+LDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 79  PANQSFDKDLQEMQDMLQQLKLDKEKTEELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138

Query: 130 XXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYILWCKDQWNEIKKENPE 189
           XXXKLKEFKPTMNFPMIQI KDKEQ        AEKKRP+PPYILWCKDQWNEIKKENPE
Sbjct: 139 XXXKLKEFKPTMNFPMIQIFKDKEQDKKEKKKCAEKKRPAPPYILWCKDQWNEIKKENPE 198

Query: 190 AEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMXXXXXXXXXX 249
           A+FKE SNILGAKWK ++A+EKKPYEE+YQAEK+ YL+ITSKEKRESEA XXXXXXXXXX
Sbjct: 199 ADFKETSNILGAKWKTISAEEKKPYEEKYQAEKETYLRITSKEKRESEAXXXXXXXXXXX 258

Query: 250 XXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNERRASLLAENKNVLEV 309
           XXXXXXXX        XXXXXXXXXXXX       MSAFFLFSNERRASL+AENKNV+E+
Sbjct: 259 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSAFFLFSNERRASLVAENKNVVEL 318

Query: 310 AKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXXXXXXXXXXXXXXXXX 369
           AKI GEEWKNMTE+Q+GPYEEMA+KNKEKYMQEMEIY XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 319 AKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYXXXXXXXXXXXXXXXXXXXXXXX 378

Query: 370 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPASSYILFSKEARKSVME 429
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VDPNKPKKPASSYILFSKEARKSVME
Sbjct: 379 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNPVDPNKPKKPASSYILFSKEARKSVME 438

Query: 430 ERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTV 481
           E+PG +NSTVNALISVKWKELSE ERK+WNDKAAEAM+ Y+KE+EEYNK+V
Sbjct: 439 EKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEGYKKEVEEYNKSV 487

[Close]
BLAST of Carg22239 vs. TrEMBL
Match: tr|A0A1S3BS50|A0A1S3BS50_CUCME (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103493110 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.7e-133
Identity = 398/486 (81.89%), Postives = 427/486 (87.86%), Query Frame = 0 

Query: 2   ASTAEIP-------KTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQ 61
           ++T E+P        TKKPRNSRKALKDKNS+PE PQS+ SMVTKVT PSE EI LSQNQ
Sbjct: 4   STTVELPVSGAPAVPTKKPRNSRKALKDKNSSPEVPQSQ-SMVTKVTTPSEGEI-LSQNQ 63

Query: 62  SSAKKPKSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXXXXXXXXXXXXX 121
           SSAKKPKS      QPAKQSFDK+LQEMQDMLQQL+LDKEKTEEL XXXXXXXXXXXXXX
Sbjct: 64  SSAKKPKSKAAAKKQPAKQSFDKDLQEMQDMLQQLKLDKEKTEELXXXXXXXXXXXXXXX 123

Query: 122 XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQXXXXXXXXAEKKRPSPPYIL 181
           XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQ        AEKKRP+ PYIL
Sbjct: 124 XXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDKEQDKKEKKKCAEKKRPAQPYIL 183

Query: 182 WCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKR 241
           WCKDQWNEIKKENPEA+FKE SNILGAKWK + A+EKKPYEE+YQAEK+ YL+ITS+EKR
Sbjct: 184 WCKDQWNEIKKENPEADFKETSNILGAKWKTIPAEEKKPYEEKYQAEKETYLRITSREKR 243

Query: 242 ESEAMXXXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPLKPKHPMSAFFLFSNE 301
           ESEA XXXXXXXXXXXXXXXXXX        XXXXXXXXXXXX        SAFFLFSNE
Sbjct: 244 ESEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFLFSNE 303

Query: 302 RRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEIYKXXXXXXX 361
           RRASL+AENKN++E+AKI GEEWKNMTE+Q+GPYEEMA+KNKEKYMQEMEIY XXXXXXX
Sbjct: 304 RRASLVAENKNIVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYXXXXXXXX 363

Query: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNKPKKPAS 421
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VDPNKPKKPAS
Sbjct: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNPVDPNKPKKPAS 423

Query: 422 SYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELE 481
           SYILFSKEARKSVMEE+PG +NSTVNALISVKWKELSE ERK+WNDKAAEAM+AY+KE+E
Sbjct: 424 SYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEAYKKEVE 483

[Close]
BLAST of Carg22239 vs. TrEMBL
Match: tr|A0A2I4E818|A0A2I4E818_9ROSI (high mobility group B protein 6-like OS=Juglans regia OX=51240 GN=LOC108987126 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.8e-102
Identity = 345/502 (68.73%), Postives = 388/502 (77.29%), Query Frame = 0 

Query: 1   MAST-AEIP----KTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPS----------- 60
           MA T AE+P     TKK RN+RKALK+KNS+ +E    S    KV++PS           
Sbjct: 1   MAETVAEMPIGPIPTKKTRNNRKALKEKNSSAKEANILSG---KVSEPSPIPVPPADNPE 60

Query: 61  -EEEILLSQNQSSAKKPKSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLXXX 120
            E    LSQ          XXX XX    QSF+ +L EMQ+ LQQLRL+K+K EELL  X
Sbjct: 61  KENHESLSQPXXXXXXXXXXXXXXXXXXXQSFENDLLEMQEKLQQLRLEKDKAEELLKAX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMI-QILKDKEQ---XXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKEFKPT+ FP+I Q L DKE+   XXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKEFKPTVTFPIIGQSLGDKEKDXXXXXXX 180

Query: 181 XXXAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQ 240
           XXX    +PSPPYILWCKD WNE KKENPEAEFKEISNILGAKWKNVTA+EKKPYEE+YQ
Sbjct: 181 XXXXXXXKPSPPYILWCKDNWNEAKKENPEAEFKEISNILGAKWKNVTAEEKKPYEEKYQ 240

Query: 241 AEKQAYLQITSKEKRESEAMXXXXXXXXXXXXXXXXXXYLQFKGEAXXXXXXXXXXXXPL 300
           AEK+ YLQ+ +KEKRESEAM                  YL FK EA            PL
Sbjct: 241 AEKEVYLQVIAKEKRESEAMKLLDEEHKQKTAMELLEQYLHFKQEA-EKETKKKKDKDPL 300

Query: 301 KPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKY 360
           KPKHPMS+FFLF+N+RRA+LLAE KNVLEVA+ITGEEWKNMTE+Q+GPYEEMA+KNKEKY
Sbjct: 301 KPKHPMSSFFLFTNDRRAALLAEKKNVLEVARITGEEWKNMTEEQKGPYEEMAKKNKEKY 360

Query: 361 MQEMEIYK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           +QEME YK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 LQEMEAYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKM 480
           XXXXXX      K+PASSY+LFSK+ARK+++EERPG NNST+NALISVKWKEL+E ERK 
Sbjct: 421 XXXXXXXXXXXXKRPASSYLLFSKDARKNLLEERPGINNSTLNALISVKWKELNEVERKT 480

[Close]
BLAST of Carg22239 vs. TrEMBL
Match: tr|A0A1S4ALW4|A0A1S4ALW4_TOBAC (high mobility group B protein 6-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107799076 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.6e-98
Identity = 336/506 (66.40%), Postives = 389/506 (76.88%), Query Frame = 0 

Query: 1   MASTAEI-----PKTKKPRNSRKALKDKNSTPEEPQSESSMVTK---------------- 60
           MA+TAE+     P   K   SRKALK KN +  E    +++VT+                
Sbjct: 1   MATTAEMTLVTDPVPAKKGRSRKALKQKNPSSNEANILAAIVTQSPSLALPVDDSVKENL 60

Query: 61  --VTQPSEEEILLSQNQSSAKKPKSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTE 120
             +TQP  E+    +  S AKK            + SF+KEL EMQ+ LQ++ L+KE+TE
Sbjct: 61  ETLTQPRSEKKTNKRGASKAKKQTE--------TENSFEKELLEMQEKLQKMTLEKEQTE 120

Query: 121 ELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDK-EQXX 180
           E+L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK+KEFKPT+NFP++Q L+DK   XX
Sbjct: 121 EILKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMKEFKPTLNFPIVQSLRDKXXXXX 180

Query: 181 XXXXXXAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEE 240
           XXXXXX   KRP+ PY+LWCKDQWNE+KK NP AEFKEISN+LGAKWK ++A+EKKPYEE
Sbjct: 181 XXXXXXXXXKRPAAPYVLWCKDQWNEVKKANPNAEFKEISNLLGAKWKTISAEEKKPYEE 240

Query: 241 RYQAEKQAYLQITSKEKRESEAMXXXXXXXXXXXXXXXXXXYLQF-KGEAXXXXXXXXXX 300
           +YQAEK+AYL+I  KEKRE EAM                  Y+QF +G    XXXXXXXX
Sbjct: 241 KYQAEKEAYLKIVGKEKRELEAMRLLDEEQKQKTAMELLEQYIQFQQGAIENXXXXXXXX 300

Query: 301 XXPLKPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKN 360
           XXPLKPK P+SAFFLF+NERRA+LLAENKNV EVAKITGEEWKNMTEKQ+ PYE MA K 
Sbjct: 301 XXPLKPKQPLSAFFLFTNERRAALLAENKNVKEVAKITGEEWKNMTEKQKAPYEGMAMKR 360

Query: 361 KEKYMQEMEIYK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           KEKY+QEME+YK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 KEKYLQEMEVYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGE 480
           XXXXXXXXXVDPNKPKKPA S+ LFSKE RK ++EERPG NNST+ ALIS+KWKELSE E
Sbjct: 421 XXXXXXXXXVDPNKPKKPAGSFFLFSKEERKKLVEERPGINNSTITALISLKWKELSEEE 480

[Close]
BLAST of Carg22239 vs. TrEMBL
Match: tr|A0A1U7USS8|A0A1U7USS8_NICSY (high mobility group B protein 6-like isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104211730 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.6e-98
Identity = 336/506 (66.40%), Postives = 389/506 (76.88%), Query Frame = 0 

Query: 1   MASTAEI-----PKTKKPRNSRKALKDKNSTPEEPQSESSMVTK---------------- 60
           MA+TAE+     P   K   SRKALK KN +  E    +++VT+                
Sbjct: 1   MATTAEMTLVTDPVPAKKGRSRKALKQKNPSSNEANILAAIVTQSPSLALPVDDSVKENL 60

Query: 61  --VTQPSEEEILLSQNQSSAKKPKSXXXPXXQPAKQSFDKELQEMQDMLQQLRLDKEKTE 120
             +TQP  E+    +  S AKK            + SF+KEL EMQ+ LQ++ L+KE+TE
Sbjct: 61  ETLTQPRSEKKTNKRGASKAKKQTE--------TENSFEKELLEMQEKLQKMTLEKEQTE 120

Query: 121 ELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKEFKPTMNFPMIQILKDK-EQXX 180
           E+L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK+KEFKPT+NFP++Q L+DK   XX
Sbjct: 121 EILKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMKEFKPTLNFPIVQSLRDKXXXXX 180

Query: 181 XXXXXXAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEE 240
           XXXXXX   KRP+ PY+LWCKDQWNE+KK NP AEFKEISN+LGAKWK ++A+EKKPYEE
Sbjct: 181 XXXXXXXXXKRPAAPYVLWCKDQWNEVKKANPNAEFKEISNLLGAKWKTISAEEKKPYEE 240

Query: 241 RYQAEKQAYLQITSKEKRESEAMXXXXXXXXXXXXXXXXXXYLQF-KGEAXXXXXXXXXX 300
           +YQAEK+AYL+I  KEKRE EAM                  Y+QF +G    XXXXXXXX
Sbjct: 241 KYQAEKEAYLKIVGKEKRELEAMRLLDEEQKQKTAMELLEQYIQFQQGAIENXXXXXXXX 300

Query: 301 XXPLKPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKN 360
           XXPLKPK P+SAFFLF+NERRA+LLAENKNV EVAKITGEEWKNMTEKQ+ PYE MA K 
Sbjct: 301 XXPLKPKQPLSAFFLFTNERRAALLAENKNVKEVAKITGEEWKNMTEKQKAPYEGMAMKR 360

Query: 361 KEKYMQEMEIYK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           KEKY+QEME+YK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 KEKYLQEMEVYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGE 480
           XXXXXXXXXVDPNKPKKPA S+ LFSKE RK ++EERPG NNST+ ALIS+KWKELSE E
Sbjct: 421 XXXXXXXXXVDPNKPKKPAGSFFLFSKEERKKLVEERPGINNSTITALISLKWKELSEEE 480

The following BLAST results are available for this feature:
BLAST of Carg22239 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931308.12.0e-17297.71high mobility group B protein 6-like [Cucurbita moschata] >XP_022931309.1 high m... [more]
XP_023551962.12.0e-17298.13high mobility group B protein 6-like [Cucurbita pepo subsp. pepo][more]
XP_022985391.15.2e-14188.77high mobility group B protein 6-like [Cucurbita maxima] >XP_022985393.1 high mob... [more]
XP_004149754.15.2e-13383.86PREDICTED: high mobility group B protein 6 [Cucumis sativus] >KGN53391.1 Transcr... [more]
XP_008451961.11.2e-13281.89PREDICTED: high mobility group B protein 6 [Cucumis melo][more]
BLAST of Carg22239 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23800.14.9e-8557.76HMG (high mobility group) box protein[more]
AT4G11080.12.4e-7962.45HMG (high mobility group) box protein[more]
AT1G20693.13.1e-0737.50high mobility group B2[more]
AT3G28730.11.2e-0638.33high mobility group[more]
AT4G35570.12.9e-0537.50high mobility group B5[more]
BLAST of Carg22239 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SUP7|HMGB6_ARATH8.9e-8457.76High mobility group B protein 6 OS=Arabidopsis thaliana OX=3702 GN=HMGB6 PE=2 SV... [more]
sp|Q9T012|HMG13_ARATH4.3e-7862.45High mobility group B protein 13 OS=Arabidopsis thaliana OX=3702 GN=HMGB13 PE=2 ... [more]
sp|P40618|HMGB3_CHICK4.5e-1125.62High mobility group protein B3 OS=Gallus gallus OX=9031 GN=HMGB3 PE=2 SV=3[more]
sp|Q32L31|HMGB3_BOVIN4.2e-0924.63High mobility group protein B3 OS=Bos taurus OX=9913 GN=HMGB3 PE=2 SV=2[more]
sp|O54879|HMGB3_MOUSE4.2e-0924.63High mobility group protein B3 OS=Mus musculus OX=10090 GN=Hmgb3 PE=1 SV=3[more]
BLAST of Carg22239 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZT4|A0A0A0KZT4_CUCSA3.4e-13383.86Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_4G051430 PE=4 SV=1[more]
tr|A0A1S3BS50|A0A1S3BS50_CUCME7.7e-13381.89high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103493110 PE=4 SV=... [more]
tr|A0A2I4E818|A0A2I4E818_9ROSI1.8e-10268.73high mobility group B protein 6-like OS=Juglans regia OX=51240 GN=LOC108987126 P... [more]
tr|A0A1S4ALW4|A0A1S4ALW4_TOBAC3.6e-9866.40high mobility group B protein 6-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=... [more]
tr|A0A1U7USS8|A0A1U7USS8_NICSY3.6e-9866.40high mobility group B protein 6-like isoform X1 OS=Nicotiana sylvestris OX=4096 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22239-RACarg22239-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 379..399
NoneNo IPR availableCOILSCoilCoilcoord: 329..367
NoneNo IPR availableCOILSCoilCoilcoord: 146..166
NoneNo IPR availableCOILSCoilCoilcoord: 72..113
NoneNo IPR availableCOILSCoilCoilcoord: 459..481
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..408
NoneNo IPR availablePANTHERPTHR13711:SF302FACT COMPLEX SUBUNIT SSRP1-RELATEDcoord: 368..478
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 368..478
NoneNo IPR availablePANTHERPTHR13711:SF302FACT COMPLEX SUBUNIT SSRP1-RELATEDcoord: 266..361
coord: 134..244
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 266..361
coord: 134..244
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 284..344
e-value: 3.70824E-12
score: 61.1045
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 167..225
e-value: 3.20529E-12
score: 61.1045
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 409..474
e-value: 6.45028E-12
score: 60.3341
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 280..348
e-value: 1.3E-23
score: 94.4
coord: 408..478
e-value: 8.4E-19
score: 78.5
coord: 164..234
e-value: 7.5E-17
score: 72.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 409..477
e-value: 6.5E-16
score: 58.4
coord: 281..347
e-value: 6.9E-18
score: 64.7
coord: 166..227
e-value: 1.2E-17
score: 63.9
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 409..477
score: 17.465
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 281..347
score: 19.004
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 165..233
score: 16.28
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 264..363
e-value: 4.8E-24
score: 86.4
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 157..251
e-value: 5.2E-19
score: 70.2
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 392..479
e-value: 2.5E-20
score: 74.6
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 268..354
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 401..479
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 154..227

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22239Cla010922Watermelon (97103) v1carwmB0589
Carg22239Csa4G051430Cucumber (Chinese Long) v2carcuB0617
Carg22239MELO3C016306Melon (DHL92) v3.5.1carmeB0596
Carg22239ClCG07G014910Watermelon (Charleston Gray)carwcgB0576
Carg22239CSPI04G06240Wild cucumber (PI 183967)carcpiB0623
Carg22239Cucsa.107270Cucumber (Gy14) v1carcgyB0663
Carg22239CmaCh16G005540Cucurbita maxima (Rimu)carcmaB0825
Carg22239CmaCh04G007020Cucurbita maxima (Rimu)carcmaB0826
Carg22239Lsi07G007060Bottle gourd (USVL1VR-Ls)carlsiB536
Carg22239Cp4.1LG14g02460Cucurbita pepo (Zucchini)carcpeB0838
Carg22239Cp4.1LG01g00320Cucurbita pepo (Zucchini)carcpeB0839
Carg22239CsGy4G006160Cucumber (Gy14) v2carcgybB0589
Carg22239MELO3C016306.2Melon (DHL92) v3.6.1carmedB0603
Carg22239CsaV3_4G006440Cucumber (Chinese Long) v3carcucB0624
Carg22239Cla97C07G141850Watermelon (97103) v2carwmbB0617
Carg22239Bhi01G002283Wax gourdcarwgoB0701
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22239Carg13057Silver-seed gourdcarcarB049
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22239Silver-seed gourdcarcarB384
Carg22239Cucumber (Gy14) v2carcgybB0590
Carg22239Cucurbita maxima (Rimu)carcmaB0824
Carg22239Cucurbita moschata (Rifu)carcmoB0804
Carg22239Cucurbita moschata (Rifu)carcmoB0802
Carg22239Cucurbita moschata (Rifu)carcmoB0803
Carg22239Cucurbita pepo (Zucchini)carcpeB0837
Carg22239Wild cucumber (PI 183967)carcpiB0624
Carg22239Cucumber (Chinese Long) v2carcuB0618
Carg22239Cucumber (Chinese Long) v3carcucB0625
Carg22239Bottle gourd (USVL1VR-Ls)carlsiB534
Carg22239Melon (DHL92) v3.5.1carmeB0594
Carg22239Melon (DHL92) v3.6.1carmedB0601
Carg22239Watermelon (Charleston Gray)carwcgB0575
Carg22239Watermelon (97103) v1carwmB0590
Carg22239Watermelon (97103) v2carwmbB0616
Carg22239Wax gourdcarwgoB0700