Carg22233 (gene) Silver-seed gourd

NameCarg22233
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGlucose-6-phosphate 1-epimerase
LocationCucurbita_argyrosperma_scaffold_174 : 220296 .. 221818 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTATTTGTTTTTGCTTTATTAATTTCCTCGTTGTGTTTTTGGAATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTACCATATCCCTTTTATTCATCTATTTTACAGTATAGGATTCTACTTTAAATTATAAGTTTAGTATTGGATTTGGACCATTTTCTCTGTTTAGTCCTAGAAGCTTTGGAAAGTTTTGATCACTTTGATTATGACTGAGTTGCTGTGATGTTGTTTATAGTTTAACTGATCGATAGCTTTGTCGTGTCGGCTTCTGATTATGTGTATATGAGTGGTATATTATGTACATGGTCTTTGTGATGTTTCTTCCTAGTATTGAGACTCTGAATGTGATATCCATATCGGTTGGAGAGGGGAACGAAGCATTGCTTATAAAGATGTGAAAATCTCTCTCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCCCCAAAAGGACAACATTTTCTAGTGGTGGGTTTGAGCTGTTATAAATGGTATCAGAGCTAGATATTGGCGGTTCCAGCGAGGACACTGGGCTCCCAAGTGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACAAAACATTGCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCCCCAAAAGGACAATATCTCATAGTGATGGGCTTGTGCTGTTATAAATGGTATAAGAGCTAGATACTGGGCAGTGCCAATGAGGACGCTGCGCTCCCAAGGGGGTGGATTGTGAGATCCCACATCAGTTGGAAAGGAGAACAAAGCATTGCTTATAAGGGTGTCAAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGTCAAAAGAGGACAATATCTACTAGTGGTAGGCTTGAGCTATTACAATTGTATTTAGAATTAAATACAGGGAGGTGTGCCAGCGAGGACGCTGGGCTCTTGAGGGGTGGATTGTGAGATCCCACATCAGTTGGAAAGGAGAACAAAGCATTGCTTATAAGGGTTGGAAACCTCTCCCTGATAGATGCGTTTTAAAACCTTGAGGTGAAGCCTAGAAGGGAAAGCCCAAAGAGGACAATATCTTGAATCGTACCCAAATTTCAGAAATCCGATTTTGTTTTTGAAACTCAGCTGATATCTATTGAAATCTGAAATTTTTAATGAAGGATACATAGGTACAAGTAAGTTTCATAAGCTTATTTTCAGAAAATAAACAACAAAATTTCCATCACACAAAATCATAAACGTAATAACTGTTCTTGTTCTTGATGTGTTCTTTATTGCTGTATCAATGATCCAGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA

mRNA sequence

ATTTGTATTTGTTTTTGCTTTATTAATTTCCTCGTTGTGTTTTTGGAATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA

Coding sequence (CDS)

ATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA

Protein sequence

MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSSSSSTRQSLSSL
BLAST of Carg22233 vs. NCBI nr
Match: XP_022985416.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MDHSGA SNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDHSGAASNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          TK +     + R
Sbjct: 61 TKAVFKPPKAVR 72

BLAST of Carg22233 vs. NCBI nr
Match: XP_023553126.1 (putative glucose-6-phosphate 1-epimerase isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MDHSGA SNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDHSGAASNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          TK +     + R
Sbjct: 61 TKAVFKPPKAVR 72

BLAST of Carg22233 vs. NCBI nr
Match: XP_022931313.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 4.2e-24
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MDHSGA SNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDHSGAVSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          TK +     + R
Sbjct: 61 TKAVFKPPKAVR 72

BLAST of Carg22233 vs. NCBI nr
Match: XP_008451974.1 (PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 7.9e-23
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MDHSG  SNQKPAVEVAKDKNGV+QVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDHSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          +K I     + R
Sbjct: 61 SKAIFKPPKAVR 72

BLAST of Carg22233 vs. NCBI nr
Match: XP_004149758.1 (PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis sativus] >KGN53382.1 hypothetical protein Csa_4G050850 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 6.7e-22
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MD SG  SNQKPAVEVAKDKNGV+QVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDRSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          +K I     + R
Sbjct: 61 SKAIFKPPKAVR 72

BLAST of Carg22233 vs. TAIR10
Match: AT4G23730.1 (Galactose mutarotase-like superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-17
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 4  SGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTK 63
          SG    ++P V++ KD+NG DQ+LL+N RGAS ++SLHGGQVLSWKT+KG+ELLF STK
Sbjct: 5  SGTGPEKRPTVDLVKDRNGTDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTK 63

BLAST of Carg22233 vs. TAIR10
Match: AT3G61610.1 (Galactose mutarotase-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.0e-16
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 9  NQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSSS 68
          +QK A E+ KD NGVDQVLLRN  GASA++SLHGGQV+SW+ E GEELLFTS K I    
Sbjct: 9  DQKEASEIIKDWNGVDQVLLRNPHGASAKISLHGGQVISWRNELGEELLFTSNKAIFKPP 68

Query: 69 SSTR 73
           S R
Sbjct: 69 KSMR 72

BLAST of Carg22233 vs. TAIR10
Match: AT5G57330.1 (Galactose mutarotase-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 15 EVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVI 65
          E+AK  NG+D+++LR SRG SA V L+G  V SWK E GEELL  S+K I
Sbjct: 9  ELAKGINGLDKIVLRESRGRSAEVYLYGSHVTSWKNENGEELLHLSSKAI 58

BLAST of Carg22233 vs. TAIR10
Match: AT4G25900.1 (Galactose mutarotase-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-08
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 15 EVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSSSSSTRQS 74
          E  K  NG+D++++R+ RG SA V L+GGQV SWK E GEELL  S+K I    +  R  
Sbjct: 32 ERTKGVNGLDKIIIRDRRGRSAEVYLYGGQVSSWKNENGEELLVMSSKAIFQPPTPIRGG 91

Query: 75 LSSL 79
          +  L
Sbjct: 92 IPVL 95

BLAST of Carg22233 vs. TAIR10
Match: AT5G14500.1 (aldose 1-epimerase family protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 14 VEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTK 63
          + V  D++G  ++LL +  G++A V L+GGQV+SWK E+ E+LL+ STK
Sbjct: 3  LNVVNDRDGSSRILLTDPAGSTAEVLLYGGQVVSWKNERREKLLYMSTK 51

BLAST of Carg22233 vs. Swiss-Prot
Match: sp|Q40784|AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-07
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 12 PAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSSSSST 71
          P  E+ K  +G+++V+LR +R   A + L+GGQV SWK + GEELLF S+K I     + 
Sbjct: 22 PFAELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAI 81

Query: 72 R 73
          R
Sbjct: 82 R 82

BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1S3BSP8|A0A1S3BSP8_CUCME (Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-23
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MDHSG  SNQKPAVEVAKDKNGV+QVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDHSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          +K I     + R
Sbjct: 61 SKAIFKPPKAVR 72

BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A0A0KYB3|A0A0A0KYB3_CUCSA (Glucose-6-phosphate 1-epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G050850 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          MD SG  SNQKPAVEVAKDKNGV+QVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS
Sbjct: 1  MDRSGEASNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60

Query: 61 TKVISSSSSSTR 73
          +K I     + R
Sbjct: 61 SKAIFKPPKAVR 72

BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1S3BTJ3|A0A1S3BTJ3_CUCME (Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 8  SNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSS 67
          +NQKPAVEVAKDKNGV+QVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS+K I   
Sbjct: 7  NNQKPAVEVAKDKNGVEQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSSKAIFKP 66

Query: 68 SSSTR 73
            + R
Sbjct: 67 PKAVR 71

BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1R3IAS0|A0A1R3IAS0_COCAP (Glucose-6-phosphate 1-epimerase OS=Corchorus capsularis OX=210143 GN=CCACVL1_13502 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-19
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          M+HSG  S+QKPAVE+ KD+NG++Q++LRN RGAS RVSLHGGQVLSW+T++GEELLFTS
Sbjct: 1  MNHSGVASDQKPAVEITKDRNGIEQIVLRNPRGASTRVSLHGGQVLSWRTDRGEELLFTS 60

Query: 61 TKVI 65
          +K I
Sbjct: 61 SKAI 64

BLAST of Carg22233 vs. TrEMBL
Match: tr|B9RCN0|B9RCN0_RICCO (Glucose-6-phosphate 1-epimerase OS=Ricinus communis OX=3988 GN=RCOM_1690740 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTS 60
          M+HSGA  +QK AVEV KD+NG+DQ++LRN RGASARVSLHGGQVLSWKT++GEELLFTS
Sbjct: 1  MNHSGAACDQKAAVEVIKDRNGIDQIILRNPRGASARVSLHGGQVLSWKTDQGEELLFTS 60

Query: 61 TK 63
          +K
Sbjct: 61 SK 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022985416.13.2e-2486.11putative glucose-6-phosphate 1-epimerase [Cucurbita maxima][more]
XP_023553126.13.2e-2486.11putative glucose-6-phosphate 1-epimerase isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022931313.14.2e-2486.11putative glucose-6-phosphate 1-epimerase [Cucurbita moschata][more]
XP_008451974.17.9e-2383.33PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis melo][more]
XP_004149758.16.7e-2281.94PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis sativus]... [more]
Match NameE-valueIdentityDescription
AT4G23730.11.6e-1764.41Galactose mutarotase-like superfamily protein[more]
AT3G61610.13.0e-1665.63Galactose mutarotase-like superfamily protein[more]
AT5G57330.12.1e-0958.00Galactose mutarotase-like superfamily protein[more]
AT4G25900.15.1e-0846.88Galactose mutarotase-like superfamily protein[more]
AT5G14500.13.3e-0746.94aldose 1-epimerase family protein[more]
Match NameE-valueIdentityDescription
sp|Q40784|AAPC_CENCI4.1e-0744.26Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BSP8|A0A1S3BSP8_CUCME5.2e-2383.33Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=... [more]
tr|A0A0A0KYB3|A0A0A0KYB3_CUCSA4.4e-2281.94Glucose-6-phosphate 1-epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G050850 PE=3 ... [more]
tr|A0A1S3BTJ3|A0A1S3BTJ3_CUCME1.2e-1983.08Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=... [more]
tr|A0A1R3IAS0|A0A1R3IAS0_COCAP6.0e-1971.88Glucose-6-phosphate 1-epimerase OS=Corchorus capsularis OX=210143 GN=CCACVL1_135... [more]
tr|B9RCN0|B9RCN0_RICCO1.0e-1877.42Glucose-6-phosphate 1-epimerase OS=Ricinus communis OX=3988 GN=RCOM_1690740 PE=3... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016853isomerase activity
GO:0030246carbohydrate binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011013Gal_mutarotase_sf_dom
IPR008183Aldose_1/G6P_1-epimerase
IPR014718GH-type_carb-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003824 catalytic activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22233-RACarg22233-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014718Glycoside hydrolase-type carbohydrate-bindingGENE3DG3DSA:2.70.98.10coord: 8..76
e-value: 9.3E-10
score: 40.1
IPR008183Aldose 1-/Glucose-6-phosphate 1-epimerasePFAMPF01263Aldose_epimcoord: 24..63
e-value: 3.7E-6
score: 26.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11122:SF10APOSPORY-ASSOCIATED PROTEIN C-RELATEDcoord: 1..74
NoneNo IPR availablePANTHERPTHR11122APOSPORY-ASSOCIATED PROTEIN C-RELATEDcoord: 1..74
IPR011013Galactose mutarotase-like domain superfamilySUPERFAMILYSSF74650Galactose mutarotase-likecoord: 19..70