Carg22233 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGTATTTGTTTTTGCTTTATTAATTTCCTCGTTGTGTTTTTGGAATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTACCATATCCCTTTTATTCATCTATTTTACAGTATAGGATTCTACTTTAAATTATAAGTTTAGTATTGGATTTGGACCATTTTCTCTGTTTAGTCCTAGAAGCTTTGGAAAGTTTTGATCACTTTGATTATGACTGAGTTGCTGTGATGTTGTTTATAGTTTAACTGATCGATAGCTTTGTCGTGTCGGCTTCTGATTATGTGTATATGAGTGGTATATTATGTACATGGTCTTTGTGATGTTTCTTCCTAGTATTGAGACTCTGAATGTGATATCCATATCGGTTGGAGAGGGGAACGAAGCATTGCTTATAAAGATGTGAAAATCTCTCTCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCCCCAAAAGGACAACATTTTCTAGTGGTGGGTTTGAGCTGTTATAAATGGTATCAGAGCTAGATATTGGCGGTTCCAGCGAGGACACTGGGCTCCCAAGTGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACAAAACATTGCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCCCCAAAAGGACAATATCTCATAGTGATGGGCTTGTGCTGTTATAAATGGTATAAGAGCTAGATACTGGGCAGTGCCAATGAGGACGCTGCGCTCCCAAGGGGGTGGATTGTGAGATCCCACATCAGTTGGAAAGGAGAACAAAGCATTGCTTATAAGGGTGTCAAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGTCAAAAGAGGACAATATCTACTAGTGGTAGGCTTGAGCTATTACAATTGTATTTAGAATTAAATACAGGGAGGTGTGCCAGCGAGGACGCTGGGCTCTTGAGGGGTGGATTGTGAGATCCCACATCAGTTGGAAAGGAGAACAAAGCATTGCTTATAAGGGTTGGAAACCTCTCCCTGATAGATGCGTTTTAAAACCTTGAGGTGAAGCCTAGAAGGGAAAGCCCAAAGAGGACAATATCTTGAATCGTACCCAAATTTCAGAAATCCGATTTTGTTTTTGAAACTCAGCTGATATCTATTGAAATCTGAAATTTTTAATGAAGGATACATAGGTACAAGTAAGTTTCATAAGCTTATTTTCAGAAAATAAACAACAAAATTTCCATCACACAAAATCATAAACGTAATAACTGTTCTTGTTCTTGATGTGTTCTTTATTGCTGTATCAATGATCCAGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA ATTTGTATTTGTTTTTGCTTTATTAATTTCCTCGTTGTGTTTTTGGAATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA ATGGATCATTCTGGGGCGCCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGTAATCTCATCTTCTAGTTCTTCAACTCGCCAAAGCCTAAGCAGCCTTTGA MDHSGAPSNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKVISSSSSSTRQSLSSL
BLAST of Carg22233 vs. NCBI nr
Match: XP_022985416.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita maxima]) HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24 Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg22233 vs. NCBI nr
Match: XP_023553126.1 (putative glucose-6-phosphate 1-epimerase isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24 Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg22233 vs. NCBI nr
Match: XP_022931313.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita moschata]) HSP 1 Score: 119.8 bits (299), Expect = 4.2e-24 Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg22233 vs. NCBI nr
Match: XP_008451974.1 (PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis melo]) HSP 1 Score: 115.5 bits (288), Expect = 7.9e-23 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg22233 vs. NCBI nr
Match: XP_004149758.1 (PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Cucumis sativus] >KGN53382.1 hypothetical protein Csa_4G050850 [Cucumis sativus]) HSP 1 Score: 112.5 bits (280), Expect = 6.7e-22 Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0
BLAST of Carg22233 vs. TAIR10
Match: AT4G23730.1 (Galactose mutarotase-like superfamily protein) HSP 1 Score: 85.5 bits (210), Expect = 1.6e-17 Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of Carg22233 vs. TAIR10
Match: AT3G61610.1 (Galactose mutarotase-like superfamily protein) HSP 1 Score: 81.3 bits (199), Expect = 3.0e-16 Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
BLAST of Carg22233 vs. TAIR10
Match: AT5G57330.1 (Galactose mutarotase-like superfamily protein) HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09 Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of Carg22233 vs. TAIR10
Match: AT4G25900.1 (Galactose mutarotase-like superfamily protein) HSP 1 Score: 53.9 bits (128), Expect = 5.1e-08 Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0
BLAST of Carg22233 vs. TAIR10
Match: AT5G14500.1 (aldose 1-epimerase family protein) HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07 Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of Carg22233 vs. Swiss-Prot
Match: sp|Q40784|AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.1e-07 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1S3BSP8|A0A1S3BSP8_CUCME (Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.2e-23 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A0A0KYB3|A0A0A0KYB3_CUCSA (Glucose-6-phosphate 1-epimerase OS=Cucumis sativus OX=3659 GN=Csa_4G050850 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22 Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0
BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1S3BTJ3|A0A1S3BTJ3_CUCME (Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103493118 PE=3 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19 Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Carg22233 vs. TrEMBL
Match: tr|A0A1R3IAS0|A0A1R3IAS0_COCAP (Glucose-6-phosphate 1-epimerase OS=Corchorus capsularis OX=210143 GN=CCACVL1_13502 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 6.0e-19 Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 0
BLAST of Carg22233 vs. TrEMBL
Match: tr|B9RCN0|B9RCN0_RICCO (Glucose-6-phosphate 1-epimerase OS=Ricinus communis OX=3988 GN=RCOM_1690740 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18 Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |