Carg22219 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22219
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein LURP-one-related like
Location	Cucurbita_argyrosperma_scaffold_174 : 119826 .. 120796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAATAGAGGGAGAGACGTGGAGCCTACCTGGTGATCCAGAGTCATCGTTTTCATGGAGGATCCAAGTTCCGTCCGATAATGAGAGTATAAATATCTGCTTCCTCTTCGAGTTAAAACCCTCAAAAATTCGAAAACAAATCAACATTCAACGAACACCGGAAGGAATTAAGATGCTCTTCTTCAAATCTTTATCCGGAGCAGTGCACCAGGAATCCCAGCCTGCGGAGGAGGTCAAGAGAGGCGGCGACGGCGCCGGCGCGGCGCGATTGTCTCACTGACGGTGTGGAGGAAGTCACTGTTACTCACCTGTAATGGTTTCACAGTGATTGATTGTAACGGAAATATCGTATACAGAGTCGATAATTACACCGGACGGCCGGAGGAAGTGATTCTGATGGACGGCCTCGGAAACTCCGTCCTTACAATGTGCCGCTCCAAGGTCAGTCGTTGCGCGAATACGCGCTTGATTTGTCTTCTTCTTCCTCTTCTTTGTGATGAAATTGAACTAAATGTGTAACTCGCTCTGATTTTGGCGGTAATTTCTGGCGGATTGGATTCTAAATTGTGTATGTTTTGGTTAATTAGAAGCTTGGACTAGCGGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGAGAAACTAGGGCTAGGAAGAAACCGATATGTCGAGTGAGGAAGAACATGAACATGCTACATGTCGCTCCGAATGCGAAAGTGCTCGCATACGTATACGACTACAGAACCTCGGAGAAAAAGTATGCGTACAGTGTGGAAGGTTCGTACGGTCAGCGATCGTGCAAGGTTTTGGACGCGTGGAGGACAGTGGTGGCGGAGGTGAAGAGGAAGGAGGCTGTGAAAGGCGGCGTTTGCTTTGGGGCGGAGGTTTTCCTTCTGGTGATTCTTCCTGGTTTTGATCCCGGATTGGCTATGGCTCTGGTTTTAGCTCTGGATCAGATGTTCTCTTAG

mRNA sequence

AAAAAAAATAGAGGGAGAGACGTGGAGCCTACCTGGTGATCCAGAGTCATCGTTTTCATGGAGGATCCAAGTTCCGTCCGATAATGAGAGTATAAATATCTGCTTCCTCTTCGAGTTAAAACCCTCAAAAATTCGAAAACAAATCAACATTCAACGAACACCGGAAGGAATTAAGATGCTCTTCTTCAAATCTTTATCCGGAGCAGTGCACCAGGAATCCCAGCCTGCGGAGGAGGTCAAGAGAGGCGGCGACGGCGCCGGCGCGGCGCGATTGTCTCACTGACGGTGTGGAGGAAGTCACTGTTACTCACCTGTAATGGTTTCACAGTGATTGATTGTAACGGAAATATCGTATACAGAGTCGATAATTACACCGGACGGCCGGAGGAAGTGATTCTGATGGACGGCCTCGGAAACTCCGTCCTTACAATGTGCCGCTCCAAGAAGCTTGGACTAGCGGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGAGAAACTAGGGCTAGGAAGAAACCGATATGTCGAGTGAGGAAGAACATGAACATGCTACATGTCGCTCCGAATGCGAAAGTGCTCGCATACGTATACGACTACAGAACCTCGGAGAAAAAGTATGCGTACAGTGTGGAAGGTTCGTACGGTCAGCGATCGTGCAAGGTTTTGGACGCGTGGAGGACAGTGGTGGCGGAGGTGAAGAGGAAGGAGGCTGTGAAAGGCGGCGTTTGCTTTGGGGCGGAGGTTTTCCTTCTGGTGATTCTTCCTGGTTTTGATCCCGGATTGGCTATGGCTCTGGTTTTAGCTCTGGATCAGATGTTCTCTTAG

Coding sequence (CDS)

ATGGACGGCCTCGGAAACTCCGTCCTTACAATGTGCCGCTCCAAGAAGCTTGGACTAGCGGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGAGAAACTAGGGCTAGGAAGAAACCGATATGTCGAGTGAGGAAGAACATGAACATGCTACATGTCGCTCCGAATGCGAAAGTGCTCGCATACGTATACGACTACAGAACCTCGGAGAAAAAGTATGCGTACAGTGTGGAAGGTTCGTACGGTCAGCGATCGTGCAAGGTTTTGGACGCGTGGAGGACAGTGGTGGCGGAGGTGAAGAGGAAGGAGGCTGTGAAAGGCGGCGTTTGCTTTGGGGCGGAGGTTTTCCTTCTGGTGATTCTTCCTGGTTTTGATCCCGGATTGGCTATGGCTCTGGTTTTAGCTCTGGATCAGATGTTCTCTTAG

Protein sequence

MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVLAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVILPGFDPGLAMALVLALDQMFS

Homology

[Close]

BLAST of Carg22219 vs. NCBI nr
Match: XP_023553089.1 (protein LURP-one-related 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 3.3e-72
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMN+LHVAPNAKVL
Sbjct: 74  MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNILHVAPNAKVL 133

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
           AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDA RTVVAEVKRKEAVKGGVCFGAEVFLLVI
Sbjct: 134 AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDASRTVVAEVKRKEAVKGGVCFGAEVFLLVI 193

Query: 121 LPGFDPGLAMALVLALDQMFS 142
           LPGFDPGLAMALVLALDQMFS
Sbjct: 194 LPGFDPGLAMALVLALDQMFS 214

[Close]

BLAST of Carg22219 vs. NCBI nr
Match: XP_022931365.1 (protein LURP-one-related 17 [Cucurbita moschata] >XP_022931367.1 protein LURP-one-related 17 [Cucurbita moschata] >XP_022931368.1 protein LURP-one-related 17 [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 2.2e-71
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMN+LHVAPNAKVL
Sbjct: 74  MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNILHVAPNAKVL 133

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
           AYVYDY TSEKKYAYSVEGSYGQRSCKVLDA RTVVAEVKRKEAVKGGVCFGAEVFLLVI
Sbjct: 134 AYVYDYGTSEKKYAYSVEGSYGQRSCKVLDASRTVVAEVKRKEAVKGGVCFGAEVFLLVI 193

Query: 121 LPGFDPGLAMALVLALDQMFS 142
           LPGFDPGLAMALVLALDQMFS
Sbjct: 194 LPGFDPGLAMALVLALDQMFS 214

[Close]

BLAST of Carg22219 vs. NCBI nr
Match: XP_022982692.1 (protein LURP-one-related 17-like [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 7.5e-64
Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MDGLG SVLTMCRSKKLG+AENWCVYEGEVG E RARK PICRVRKNMN+LHVAPN+KVL
Sbjct: 76  MDGLGKSVLTMCRSKKLGIAENWCVYEGEVGREIRARKNPICRVRKNMNILHVAPNSKVL 135

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
           AYVYDYR S+KKYAYS+EGSYGQRSCKVLDA R VVAEV+RKE +KGGVCFGAEVFLL++
Sbjct: 136 AYVYDYRISDKKYAYSIEGSYGQRSCKVLDASRRVVAEVRRKEPIKGGVCFGAEVFLLLV 195

Query: 121 LPGFDPGLAMALVLALDQMFS 142
           LPGFD GLAMALVL LDQMFS
Sbjct: 196 LPGFDSGLAMALVLLLDQMFS 216

[Close]

BLAST of Carg22219 vs. NCBI nr
Match: XP_023535240.1 (protein LURP-one-related 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 1.3e-63
Identity = 120/141 (85.11%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MDGLG SVLTMCRSKKLG+AENWCVYEGEVGG+ RARK PICRVRKNMN+LHVAPN+KVL
Sbjct: 76  MDGLGKSVLTMCRSKKLGIAENWCVYEGEVGGKIRARKNPICRVRKNMNILHVAPNSKVL 135

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
           AYVYDYR S+KKYAYS+EGSYGQRSCK+LDA R VVAEV+RKE + GGVCFGAEVFLL++
Sbjct: 136 AYVYDYRISDKKYAYSIEGSYGQRSCKILDASRRVVAEVRRKEPINGGVCFGAEVFLLLV 195

Query: 121 LPGFDPGLAMALVLALDQMFS 142
           LPGFD GLAMALVL LDQMFS
Sbjct: 196 LPGFDSGLAMALVLLLDQMFS 216

[Close]

BLAST of Carg22219 vs. NCBI nr
Match: XP_022942383.1 (protein LURP-one-related 17-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 3.7e-63
Identity = 120/141 (85.11%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MDGLG SVLTMCRSKKLG+AENWCVYEGEVG E RARK PICRVRKNMN+LHVAPN+KVL
Sbjct: 78  MDGLGKSVLTMCRSKKLGIAENWCVYEGEVGREIRARKNPICRVRKNMNILHVAPNSKVL 137

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
           AYVYDYR S+KKYAYS+EGSYGQRSCK+LDA R VVAEV+RKE + GGVCFGAEVFLL++
Sbjct: 138 AYVYDYRISDKKYAYSIEGSYGQRSCKILDASRRVVAEVRRKEPINGGVCFGAEVFLLLV 197

Query: 121 LPGFDPGLAMALVLALDQMFS 142
           LPGFD GLAMALVL LDQMFS
Sbjct: 198 LPGFDSGLAMALVLLLDQMFS 218

[Close]

BLAST of Carg22219 vs. TAIR10
Match: AT5G41590.1 (Protein of unknown function (DUF567))

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-28
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYE-GEVGGETRARKKPICRVRKNMNMLHVAPNAKV 60
           MD  GNS+L M R+KK+ L ++W +YE  +  GET+  K P   +RKN+ M  ++  + +
Sbjct: 80  MDKDGNSLLLMHRTKKITLVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDI 139

Query: 61  LAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDA-WRTVVAEVKRKEAVKGGVCFGAEVFLL 120
           LAYVY   + +KK +Y ++GSY  +SCK++       V E+KRKE    GV FG++VF L
Sbjct: 140 LAYVYS-GSFDKKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDL 199

Query: 121 VILPGFDPGLAMALVLALDQMFS 142
           V+ PGFD GLAMALVL LDQMFS
Sbjct: 200 VVNPGFDTGLAMALVLLLDQMFS 221

[Close]

BLAST of Carg22219 vs. TAIR10
Match: AT2G38640.1 (Protein of unknown function (DUF567))

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MD  G  +L++ R KKL L + W VY+GE        + PI   RKN++++    N K L
Sbjct: 66  MDASGFPLLSI-RRKKLSLGDCWMVYDGE------TERDPIFTARKNVSII---SNRKSL 125

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRT--VVAEVKRKEAVKGGVCFGAEVFLL 120
           A+V    +++K   Y +EGSYGQRSCK+LD  R     AE+KRKE V GGV FG +V+ L
Sbjct: 126 AWV----SAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKL 185

Query: 121 VILPGFDPGLAMALVLALDQMF 141
           ++    +P +AMAL + LDQMF
Sbjct: 186 IVESEMEPRVAMALTIILDQMF 193

[Close]

BLAST of Carg22219 vs. TAIR10
Match: AT3G15810.1 (Protein of unknown function (DUF567))

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MD  G  +LT+ R K+  L + W   EG + GE    +KPI  VR++     +     + 
Sbjct: 76  MDATGKCLLTVKR-KRPTLHQRW---EGFL-GERSEGQKPIFSVRRS----SIIGRCTME 135

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
             VYD    E    Y ++G + QRSC + D  +  VAE+KRK      V  G +VF L I
Sbjct: 136 VEVYDGTGEE----YIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEI 195

Query: 121 LPGFDPGLAMALVLALDQM 140
            PGFD   AM LV+ LDQ+
Sbjct: 196 KPGFDGAFAMGLVVVLDQI 201

[Close]

BLAST of Carg22219 vs. Swiss-Prot
Match: sp|A0MFL4|LOR17_ARATH (Protein LURP-one-related 17 OS=Arabidopsis thaliana OX=3702 GN=At5g41590 PE=2 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYE-GEVGGETRARKKPICRVRKNMNMLHVAPNAKV 60
           MD  GNS+L M R+KK+ L ++W +YE  +  GET+  K P   +RKN+ M  ++  + +
Sbjct: 80  MDKDGNSLLLMHRTKKITLVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDI 139

Query: 61  LAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDA-WRTVVAEVKRKEAVKGGVCFGAEVFLL 120
           LAYVY   + +KK +Y ++GSY  +SCK++       V E+KRKE    GV FG++VF L
Sbjct: 140 LAYVYS-GSFDKKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDL 199

Query: 121 VILPGFDPGLAMALVLALDQMFS 142
           V+ PGFD GLAMALVL LDQMFS
Sbjct: 200 VVNPGFDTGLAMALVLLLDQMFS 221

[Close]

BLAST of Carg22219 vs. Swiss-Prot
Match: sp|Q9ZVI6|LOR8_ARATH (Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MD  G  +L++ R KKL L + W VY+GE        + PI   RKN++++    N K L
Sbjct: 66  MDASGFPLLSI-RRKKLSLGDCWMVYDGE------TERDPIFTARKNVSII---SNRKSL 125

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRT--VVAEVKRKEAVKGGVCFGAEVFLL 120
           A+V    +++K   Y +EGSYGQRSCK+LD  R     AE+KRKE V GGV FG +V+ L
Sbjct: 126 AWV----SAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKL 185

Query: 121 VILPGFDPGLAMALVLALDQMF 141
           ++    +P +AMAL + LDQMF
Sbjct: 186 IVESEMEPRVAMALTIILDQMF 193

[Close]

BLAST of Carg22219 vs. Swiss-Prot
Match: sp|Q9LVZ8|LOR12_ARATH (Protein LURP-one-related 12 OS=Arabidopsis thaliana OX=3702 GN=At3g15810 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-12
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKVL 60
           MD  G  +LT+ R K+  L + W   EG + GE    +KPI  VR++     +     + 
Sbjct: 76  MDATGKCLLTVKR-KRPTLHQRW---EGFL-GERSEGQKPIFSVRRS----SIIGRCTME 135

Query: 61  AYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLVI 120
             VYD    E    Y ++G + QRSC + D  +  VAE+KRK      V  G +VF L I
Sbjct: 136 VEVYDGTGEE----YIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEI 195

Query: 121 LPGFDPGLAMALVLALDQM 140
            PGFD   AM LV+ LDQ+
Sbjct: 196 KPGFDGAFAMGLVVVLDQI 201

[Close]

BLAST of Carg22219 vs. TrEMBL
Match: tr|A0A1S3BSV7|A0A1S3BSV7_CUCME (protein LURP-one-related 17 OS=Cucumis melo OX=3656 GN=LOC103493137 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-59
Identity = 123/143 (86.01%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARK-KPICRVRKNMNMLHVAPNAKV 60
           MDGLG SVLTMCRSKKLGL ENWCVYEGEV G+TR RK KPICRV+KN+N+LHV PNAKV
Sbjct: 74  MDGLGKSVLTMCRSKKLGLGENWCVYEGEVEGKTRGRKNKPICRVKKNINILHVDPNAKV 133

Query: 61  LAYVYDYRTSEKKYAYSVEGSYGQRSCKVLD-AWRTVVAEVKRKEAVKGGVCFGAEVFLL 120
           LAYVYDYR S+KKYAYSVEGSYG+RSCKVLD A R VVAEVKRKEAVKGGV FGAEVFLL
Sbjct: 134 LAYVYDYRISKKKYAYSVEGSYGERSCKVLDAASRRVVAEVKRKEAVKGGVGFGAEVFLL 193

Query: 121 VILPGFDPGLAMALVLALDQMFS 142
           VI+PGFD GLAMALVL LDQMFS
Sbjct: 194 VIVPGFDSGLAMALVLLLDQMFS 216

[Close]

BLAST of Carg22219 vs. TrEMBL
Match: tr|A0A0A0KWV7|A0A0A0KWV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G050160 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.0e-58
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRARK-KPICRVRKNMNMLHVAPNAKV 60
           MDGLG SVLTMCRSKKLGL ENWCVYEGEV G+T+ RK KPICRV+KN+N+LHV PN KV
Sbjct: 75  MDGLGKSVLTMCRSKKLGLGENWCVYEGEVEGKTKGRKNKPICRVKKNINILHVDPNRKV 134

Query: 61  LAYVYDYRTSEKKYAYSVEGSYGQRSCKVLD-AWRTVVAEVKRKEAVKGGVCFGAEVFLL 120
           LA+VYDYR S+KKYAYSVEGSYG+RSCKVLD A R VVAEV+RKEAVKGGVCFG EVF+L
Sbjct: 135 LAHVYDYRISKKKYAYSVEGSYGERSCKVLDGASRRVVAEVRRKEAVKGGVCFGGEVFVL 194

Query: 121 VILPGFDPGLAMALVLALDQMFS 142
           VI+PGFD GLAMALVL LDQMFS
Sbjct: 195 VIVPGFDCGLAMALVLLLDQMFS 217

[Close]

BLAST of Carg22219 vs. TrEMBL
Match: tr|A0A2R6QN71|A0A2R6QN71_ACTCH (Protein LURP-one-related like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15638 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.2e-39
Identity = 89/142 (62.68%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLG-LAENWCVYEGEVGGETRARKKPICRVRKNMNMLHVAPNAKV 60
           MDG G  +LT+CR KKL  LA++W VYEGEV G++ + KKPIC V+K+M  LH  PN  V
Sbjct: 70  MDGSGKPILTICRRKKLRVLADSWRVYEGEV-GDSFSSKKPICCVKKHMKTLH--PNVSV 129

Query: 61  LAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEVFLLV 120
           LA+VY +R+S+KK AY +EGSYG+RSC+VLD  R VVAE++RKEAV GGV FG EVF+L+
Sbjct: 130 LAHVY-HRSSDKKCAYMIEGSYGRRSCRVLDESRRVVAEIRRKEAVNGGVSFGLEVFVLI 189

Query: 121 ILPGFDPGLAMALVLALDQMFS 142
           + PGF+P  AMA+VL LDQMFS
Sbjct: 190 VRPGFNPNFAMAIVLLLDQMFS 207

[Close]

BLAST of Carg22219 vs. TrEMBL
Match: tr|A0A2N9GUG9|A0A2N9GUG9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31035 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.1e-38
Identity = 89/146 (60.96%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKK-LGLAENWCVYEGEVGGE----TRARKKPICRVRKNMNMLHVAP 60
           MDG G  V TM RSK    L ++W VYEGE+ G+    +++ KKPIC VRK++N+LH  P
Sbjct: 80  MDGSGKPVHTMRRSKSTFRLVDSWVVYEGELAGDHWRTSKSSKKPICSVRKHVNILHANP 139

Query: 61  NAKVLAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEV 120
           N  VLA+V+   TS+K+YAY +EGSY  RSCKVLD  R VVAE+KRKEA+KGG+ FG +V
Sbjct: 140 N-NVLAHVF-RGTSDKRYAYVIEGSYAHRSCKVLDESRKVVAEIKRKEAMKGGISFGLDV 199

Query: 121 FLLVILPGFDPGLAMALVLALDQMFS 142
           F+LV+ PGFDPG AMALVL LDQMFS
Sbjct: 200 FVLVVQPGFDPGFAMALVLLLDQMFS 223

[Close]

BLAST of Carg22219 vs. TrEMBL
Match: tr|D7TV75|D7TV75_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00500 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 89/146 (60.96%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   MDGLGNSVLTMCRSKKLGLAENWCVYEGEVGGETRAR-----KKPICRVRKNMNMLHVAP 60
           MD  G SVLT+ R K L L ENW VYEGEVG  +R +     K+PIC V+K++N+LH   
Sbjct: 78  MDASGKSVLTVRRRKNLRLVENWHVYEGEVGDTSRTKRPSSSKQPICSVKKHINILHA-- 137

Query: 61  NAKVLAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDAWRTVVAEVKRKEAVKGGVCFGAEV 120
           N  VLAYV+    S+K+YAY +EGSY  RSCKVLD  R VVAE+KRKEA+  GV FG EV
Sbjct: 138 NHNVLAYVF-LGNSDKRYAYRIEGSYANRSCKVLDKSRRVVAEIKRKEAMNEGVSFGVEV 197

Query: 121 FLLVILPGFDPGLAMALVLALDQMFS 142
           FLL++ PGFD G AMALVL LDQMFS
Sbjct: 198 FLLIVCPGFDSGFAMALVLLLDQMFS 220

The following BLAST results are available for this feature:

BLAST of Carg22219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553089.1	3.3e-72	98.58	protein LURP-one-related 17-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931365.1	2.2e-71	97.87	protein LURP-one-related 17 [Cucurbita moschata] >XP_022931367.1 protein LURP-on...	[more]
XP_022982692.1	7.5e-64	86.52	protein LURP-one-related 17-like [Cucurbita maxima]	[more]
XP_023535240.1	1.3e-63	85.11	protein LURP-one-related 17-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942383.1	3.7e-63	85.11	protein LURP-one-related 17-like [Cucurbita moschata]	[more]

BLAST of Carg22219 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41590.1	6.1e-28	48.25	Protein of unknown function (DUF567)	[more]
AT2G38640.1	1.0e-22	44.37	Protein of unknown function (DUF567)	[more]
AT3G15810.1	2.5e-13	37.41	Protein of unknown function (DUF567)	[more]

BLAST of Carg22219 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A0MFL4\|LOR17_ARATH	1.1e-26	48.25	Protein LURP-one-related 17 OS=Arabidopsis thaliana OX=3702 GN=At5g41590 PE=2 SV...	[more]
sp\|Q9ZVI6\|LOR8_ARATH	1.8e-21	44.37	Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=...	[more]
sp\|Q9LVZ8\|LOR12_ARATH	4.5e-12	37.41	Protein LURP-one-related 12 OS=Arabidopsis thaliana OX=3702 GN=At3g15810 PE=2 SV...	[more]

BLAST of Carg22219 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSV7\|A0A1S3BSV7_CUCME	1.3e-59	86.01	protein LURP-one-related 17 OS=Cucumis melo OX=3656 GN=LOC103493137 PE=4 SV=1	[more]
tr\|A0A0A0KWV7\|A0A0A0KWV7_CUCSA	4.0e-58	82.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G050160 PE=4 SV=1	[more]
tr\|A0A2R6QN71\|A0A2R6QN71_ACTCH	7.2e-39	62.68	Protein LURP-one-related like OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|A0A2N9GUG9\|A0A2N9GUG9_FAGSY	6.1e-38	60.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31035 PE=4 SV=1	[more]
tr\|D7TV75\|D7TV75_VITVI	1.8e-37	60.96	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025659	Tubby-like_C
IPR038595	LOR_sf
IPR007612	LOR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22219-RA	Carg22219-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007612	LURP-one-related	PFAM	PF04525	LOR	coord: 1..134 e-value: 1.1E-28 score: 100.1
IPR007612	LURP-one-related	PANTHER	PTHR31087	FAMILY NOT NAMED	coord: 1..141
IPR038595	LURP-one-related superfamily	GENE3D	G3DSA:3.20.90.20		coord: 1..141 e-value: 2.1E-30 score: 107.6
None	No IPR available	PANTHER	PTHR31087:SF14	PROTEIN LURP-ONE-RELATED 17	coord: 1..141
IPR025659	Tubby-like, C-terminal	SUPERFAMILY	SSF54518	Tubby C-terminal domain-like	coord: 1..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22219	Cla014671	Watermelon (97103) v1	carwmB0588
Carg22219	Csa4G050160	Cucumber (Chinese Long) v2	carcuB0617
Carg22219	MELO3C016334	Melon (DHL92) v3.5.1	carmeB0596
Carg22219	ClCG07G007810	Watermelon (Charleston Gray)	carwcgB0577
Carg22219	CSPI04G05980	Wild cucumber (PI 183967)	carcpiB0623
Carg22219	Cucsa.107000	Cucumber (Gy14) v1	carcgyB0663
Carg22219	CmaCh04G007190	Cucurbita maxima (Rimu)	carcmaB0826
Carg22219	CmaCh16G005780	Cucurbita maxima (Rimu)	carcmaB0825
Carg22219	CmoCh04G007620	Cucurbita moschata (Rifu)	carcmoB0804
Carg22219	CmoCh16G006270	Cucurbita moschata (Rifu)	carcmoB0803
Carg22219	Lsi07G009080	Bottle gourd (USVL1VR-Ls)	carlsiB535
Carg22219	Cp4.1LG14g02260	Cucurbita pepo (Zucchini)	carcpeB0838
Carg22219	Cp4.1LG01g00160	Cucurbita pepo (Zucchini)	carcpeB0839
Carg22219	CsGy4G005870	Cucumber (Gy14) v2	carcgybB0589
Carg22219	MELO3C016334.2	Melon (DHL92) v3.6.1	carmedB0603
Carg22219	CsaV3_4G006150	Cucumber (Chinese Long) v3	carcucB0624
Carg22219	Cla97C07G134990	Watermelon (97103) v2	carwmbB0618
Carg22219	Bhi01G001780	Wax gourd	carwgoB0702

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22219	Carg14117	Silver-seed gourd	carcarB535

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22219	Cucurbita maxima (Rimu)	carcmaB0824
Carg22219	Cucurbita moschata (Rifu)	carcmoB0802
Carg22219	Cucurbita pepo (Zucchini)	carcpeB0837
Carg22219	Melon (DHL92) v3.5.1	carmeB0594
Carg22219	Watermelon (Charleston Gray)	carwcgB0575
Carg22219	Watermelon (97103) v2	carwmbB0616