Carg22143 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22143
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_229 : 267434 .. 267886 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGGTTAAGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

mRNA sequence

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

Coding sequence (CDS)

ATGGACAACAAGTGCATGAACACCCACATCTTGGGCATGCTCTCCTCAGAAATGAAGTACCCGCTGAAGAGGAAAAACCCGGCCAGCAGAACCGTCACCAGCGACAAGCCGGCGATGAAGTTCGGAGATAAGGCGTGTGTTGGCGACGTGGGTGAGGCGGAGGTCGGCGAGAAGGGAGTCGACAGTGGCCTGGATTTGGGATTTACTAGGGAGGAGAAGGCGGGCGGCGAAGGCGAATGTTTCGGAGACGAGAGGGAGACAGGCGTCGTGTTGAGGAACGTAGGTGGAGAGTTTGCGGAAAGTGGAAAGGTTCAGAGTGGAGGAGTTGAGAAGAACGGCTCCATGAGTCGGGGTGGTTCGAGCGGCGAGGATATCAAGAAGAGTGGATTTTCCGGCGCCGCTTGGGCCGACAATGGCGAGAATTTGAGAAGGATGCGCTGTGAATGA

Protein sequence

MDNKCMNTHILGMLSSEMKYPLKRKNPASRTVTSDKPAMKFGDKACVGDVGEAEVGEKGVDSGLDLGFTREEKAGGEGECFGDERETGVVLRNVGGEFAESGKVQSGGVEKNGSMSRGGSSGEDIKKSGFSGAAWADNGENLRRMRCE

Homology

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BLAST of Carg22143 vs. NCBI nr
Match: RDX84802.1 (hypothetical protein CR513_34091, partial [Mucuna pruriens])

HSP 1 Score: 76.6 bits (187), Expect = 7.7e-11
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 47  VGDVGEAEVGEKGVDSGLDLGFTREEKAGGEGECFGD--ERETGVVLRNVGGEFAESGKV 106
           VG VGE+E GE+G D G ++G   EE  GGE E FGD  ERE G+VL +VGGE +E G  
Sbjct: 68  VGQVGESEFGEEGGDGGAEVGVGFEE-LGGEEEGFGDGEEREAGIVLGDVGGELSEGGGD 127

Query: 107 QSGGVEKNGSMSRGGSSGEDIKKSGFSGAAWADNGENLRRMRC 148
           + GGVE   ++    +  E++++   SG+AWA +G++L R+ C
Sbjct: 128 ERGGVEPELTVGGESAGRENVQEGRLSGSAWAHHGQDLARLGC 169

The following BLAST results are available for this feature:

BLAST of Carg22143 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX84802.1	7.7e-11	45.63	hypothetical protein CR513_34091, partial [Mucuna pruriens]	[more]

BLAST of Carg22143 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22143 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22143 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22143-RA	Carg22143-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22143	CmaCh18G012820	Cucurbita maxima (Rimu)	carcmaB1032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22143	Silver-seed gourd	carcarB583
Carg22143	Silver-seed gourd	carcarB594
Carg22143	Cucumber (Gy14) v1	carcgyB0828
Carg22143	Cucurbita maxima (Rimu)	carcmaB1031
Carg22143	Cucurbita moschata (Rifu)	carcmoB1002
Carg22143	Cucurbita moschata (Rifu)	carcmoB1003
Carg22143	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22143	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22143	Wild cucumber (PI 183967)	carcpiB0771
Carg22143	Cucumber (Chinese Long) v2	carcuB0754
Carg22143	Cucumber (Chinese Long) v3	carcucB0774
Carg22143	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22143	Melon (DHL92) v3.5.1	carmeB0734
Carg22143	Melon (DHL92) v3.6.1	carmedB0745
Carg22143	Watermelon (97103) v1	carwmB0736
Carg22143	Wax gourd	carwgoB0870
Carg22143	Watermelon (97103) v2	carwmbB0772