Carg22129 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22129
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein REVEILLE 6-like isoform X1
Location	Cucurbita_argyrosperma_scaffold_229 : 227784 .. 229222 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCAGATCTTGCACTCGTGTCACGGCCATTACAGCCATCATCTGTTGAACCGGAATGCATTACAAAGCCAGATTCCTCTTCGGTTCCTGTGAGTTTTGTTTCTGCTGCTGCCATGCCTTCCAGGGCGGATCATTCTATCCACACTGCCAATTTCTCTCAAGCTGCAAGAGGTTTGAATTGCCATATCGCAATTGAGCCTGAAGTCTCTGAACATGATCTTAATGTTTCTTTCTTCTTTGATTGCTTTAGATCATTCCTTTCTATTTTATGTTTGCAGGGGAAGTTAAACAAAATAACTGTAGCATTACAAGAACACGTTTTCCAACTAAATCATCAAGCATCGAGGAAAATAACAACCTTCCGTTGAGAGGTGAAGTATTATTAAATTTCCTTAAGAGGACGCTTTGTTTACCATTACTTATTACTGGCTGTTGTTTGTATGCAGTTCTTCCAGATTTTGGTCAGGTTTATAACTTCATTGGCAGCGTGTTCGACCCAAAAGCCATAGATCATTTGCAGAGGTTAAACAAGATGGACCAAATAGACGTCGAAACCGTATGTTCTTCGACCCAATTTCATTGGTTCCACTATGAAATACCATTGATTGGCTTCACAATAGCTATACTTCCATCTGAAATTCAGCCCATTTACTAGTTTTGTAGTTCACATAATGTTCTACCTAACACTCTTTAAATATAGTAATATGCTTCAAACAACTTACATAGTAAATATCTGATACCCTTATCCGCTCTTCAGGTGCTTTTGCTGATGAGAAACTTGGCTATTAACCTGTCCAGCCCTGACTTCGAGGATCATGTGAGTATTTACTTCTCTGTCTTCTATACCAAAACTCTGACTCTGTTGTTCCTGAGGCAGAGAGTTTTGTTAACTGTTCAACCTCGAATCTACGACCCCATTTCAGAATTTTGTTAACTGTTCATGTTGAATTTTGCTCGAACAAACGGAATAAATTTTTTTTTTGAAACATGAGACGAGTGAAGGAAATTTAGCATTTTCTAAAAATTATGATTGTTTTGATTACATGTTATCTATTATGCAGAAAAGGGTACTATCATCATATGATGCGTTCATGGAACATGGGTAGTAATAAAAACAAAGCTGGAGAGTTCCCCTGTTCATGGAACATCGGCTTGTATTGCTGTTGAATATCTTCGCCCACTGGCCACTATCACTTGTAGAGCAAGAGGGAAGTGGAGGAATTGATGGCCATTCTGCATACCTCTCTACTTCCTGCTTTCCGAGCATATGTATAGTTCTAAGTTTTGACATAGAAAATATGGTGTATCCATCCTAATAATAAGAGGATCGTCTTTTCCTCTCGAGGTTACTACAATTCCAGAAAATGGAAATGCAGATTATAACAGTTCAAACCTACCGTTAGTAGATATTGTCTTCACGGTTTTAAAGATGTGT

mRNA sequence

ATGATCTCAGATCTTGCACTCGTGTCACGGCCATTACAGCCATCATCTGTTGAACCGGAATGCATTACAAAGCCAGATTCCTCTTCGGTTCCTGTGAGTTTTGTTTCTGCTGCTGCCATGCCTTCCAGGGCGGATCATTCTATCCACACTGCCAATTTCTCTCAAGCTGCAAGAGGGGAAGTTAAACAAAATAACTGTAGCATTACAAGAACACGTTTTCCAACTAAATCATCAAGCATCGAGGAAAATAACAACCTTCCGTTGAGAGTTCTTCCAGATTTTGGTCAGGTTTATAACTTCATTGGCAGCGTGTTCGACCCAAAAGCCATAGATCATTTGCAGAGGTTAAACAAGATGGACCAAATAGACGTCGAAACCGTGCTTTTGCTGATGAGAAACTTGGCTATTAACCTGTCCAGCCCTGACTTCGAGGATCATAAAAGGGTACTATCATCATATGATGCGTTCATGGAACATGGGTAGTAATAAAAACAAAGCTGGAGAGTTCCCCTGTTCATGGAACATCGGCTTGTATTGCTGTTGAATATCTTCGCCCACTGGCCACTATCACTTGTAGAGCAAGAGGGAAGTGGAGGAATTGATGGCCATTCTGCATACCTCTCTACTTCCTGCTTTCCGAGCATATGTATAGTTCTAAGTTTTGACATAGAAAATATGGTGTATCCATCCTAATAATAAGAGGATCGTCTTTTCCTCTCGAGGTTACTACAATTCCAGAAAATGGAAATGCAGATTATAACAGTTCAAACCTACCGTTAGTAGATATTGTCTTCACGGTTTTAAAGATGTGT

Coding sequence (CDS)

ATGATCTCAGATCTTGCACTCGTGTCACGGCCATTACAGCCATCATCTGTTGAACCGGAATGCATTACAAAGCCAGATTCCTCTTCGGTTCCTGTGAGTTTTGTTTCTGCTGCTGCCATGCCTTCCAGGGCGGATCATTCTATCCACACTGCCAATTTCTCTCAAGCTGCAAGAGGGGAAGTTAAACAAAATAACTGTAGCATTACAAGAACACGTTTTCCAACTAAATCATCAAGCATCGAGGAAAATAACAACCTTCCGTTGAGAGTTCTTCCAGATTTTGGTCAGGTTTATAACTTCATTGGCAGCGTGTTCGACCCAAAAGCCATAGATCATTTGCAGAGGTTAAACAAGATGGACCAAATAGACGTCGAAACCGTGCTTTTGCTGATGAGAAACTTGGCTATTAACCTGTCCAGCCCTGACTTCGAGGATCATAAAAGGGTACTATCATCATATGATGCGTTCATGGAACATGGGTAG

Protein sequence

MISDLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQNNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG

Homology

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BLAST of Carg22129 vs. NCBI nr
Match: XP_022944893.1 (protein REVEILLE 6-like [Cucurbita moschata])

HSP 1 Score: 308.1 bits (788), Expect = 1.7e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 4   DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 63
           DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ
Sbjct: 108 DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 167

Query: 64  NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 123
           NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID
Sbjct: 168 NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 227

Query: 124 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG
Sbjct: 228 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 264

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BLAST of Carg22129 vs. NCBI nr
Match: XP_023541352.1 (protein REVEILLE 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 1.1e-79
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 4   DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 63
           DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ
Sbjct: 108 DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 167

Query: 64  NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 123
           NNCSITRTRFPTKSSSIE NNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID
Sbjct: 168 NNCSITRTRFPTKSSSIEGNNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 227

Query: 124 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG
Sbjct: 228 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 264

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BLAST of Carg22129 vs. NCBI nr
Match: XP_022968540.1 (protein REVEILLE 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 9.6e-76
Identity = 150/157 (95.54%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 4   DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 63
           DLALVS PLQP SVEPECITKPDSSSVPVSFVSAAAMPSRADHSI TANFSQ ARGEVKQ
Sbjct: 108 DLALVSLPLQPPSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIQTANFSQTARGEVKQ 167

Query: 64  NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 123
           NNCSITRTRFPTKSSSIEENN+LPLRVLPDFGQVYNFIGSVFDP AIDHLQRL KMDQID
Sbjct: 168 NNCSITRTRFPTKSSSIEENNSLPLRVLPDFGQVYNFIGSVFDPTAIDHLQRLKKMDQID 227

Query: 124 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG
Sbjct: 228 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 264

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BLAST of Carg22129 vs. NCBI nr
Match: XP_022968541.1 (protein REVEILLE 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 9.6e-76
Identity = 150/157 (95.54%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 4   DLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQ 63
           DLALVS PLQP SVEPECITKPDSSSVPVSFVSAAAMPSRADHSI TANFSQ ARGEVKQ
Sbjct: 108 DLALVSLPLQPPSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIQTANFSQTARGEVKQ 167

Query: 64  NNCSITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQID 123
           NNCSITRTRFPTKSSSIEENN+LPLRVLPDFGQVYNFIGSVFDP AIDHLQRL KMDQID
Sbjct: 168 NNCSITRTRFPTKSSSIEENNSLPLRVLPDFGQVYNFIGSVFDPTAIDHLQRLKKMDQID 227

Query: 124 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG
Sbjct: 228 VETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 264

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BLAST of Carg22129 vs. NCBI nr
Match: XP_008439278.1 (PREDICTED: protein REVEILLE 6-like isoform X3 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 4.5e-57
Identity = 124/164 (75.61%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 2   ISDLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEV 61
           +S +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ ARG+V
Sbjct: 134 VSGVALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQGARGQV 193

Query: 62  KQNNCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRL 121
            +NNCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA +HL+RL
Sbjct: 194 IENNCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKASNHLKRL 253

Query: 122 NKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
            +MDQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 254 EQMDQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 296

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BLAST of Carg22129 vs. TAIR10
Match: AT5G52660.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 88  LRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHK 147
           LRVLPDF QVY FIGSVFDP A +HLQ+L KMD IDVETVLLLMRNL+INLSSPDFEDH+
Sbjct: 240 LRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHR 299

Query: 148 RVLSSYD 155
           R+LSSYD
Sbjct: 300 RLLSSYD 306

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BLAST of Carg22129 vs. TAIR10
Match: AT1G01520.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-22
Identity = 48/100 (48.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 61  VKQNNCSITRTRFPTKSSSIEENNN-----LPLRVLPDFGQVYNFIGSVFDPKAIDHLQR 120
           V +N CS + +R   ++  + E N+      P RV P+F +VYNFIGSVFDPK   H++R
Sbjct: 187 VSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKR 246

Query: 121 LNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDA 156
           L +MD I++ETVLLLM+NL++NL+SP+F++ ++++SSY+A
Sbjct: 247 LKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 286

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BLAST of Carg22129 vs. TAIR10
Match: AT4G01280.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-20
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 17  VEPECITKPDSSSVPVSFVSAAAMPSRADHS--------IHTANFSQAARGEVKQNNC-- 76
           +EP  +   DS S+  +    A+  S  +H         I       +A   +  N C  
Sbjct: 151 LEPGYLYSSDSKSLMGNQAVCASTSSSWNHESTNLPKPVIEVEEPGVSATAPLPNNRCRQ 210

Query: 77  -SITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVE 136
               R R  TK ++ EE+   P RV+P+F +VY+FIGSVFDP    HLQRL +MD I++E
Sbjct: 211 EDTERVRAVTKPNN-EESCEKPHRVMPNFAEVYSFIGSVFDPNTSGHLQRLKQMDPINME 270

Query: 137 TVLLLMRNLAINLSSPDFEDHKRVLSSYDA 156
           TVLLLM+NL++NL+SP+F + +R++SSY A
Sbjct: 271 TVLLLMQNLSVNLTSPEFAEQRRLISSYSA 299

[Close]

BLAST of Carg22129 vs. TAIR10
Match: AT3G09600.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 88  LRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHK 147
           L  +PDF +VYNFIGSVFDP+   H+++L +MD I+ ETVLLLMRNL +NLS+PD E  +
Sbjct: 210 LHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTVNLSNPDLESTR 269

Query: 148 RVLSSYD 155
           +VL SYD
Sbjct: 270 KVLLSYD 276

[Close]

BLAST of Carg22129 vs. TAIR10
Match: AT5G02840.1 (LHY/CCA1-like 1)

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-16
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 91  LPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVL 150
           LPDF +VYNFIGSVFDP +   +++L +MD I+ ETVLLLMRNL +NLS+PDFE     +
Sbjct: 222 LPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPTSEYV 281

Query: 151 SSYDAFMEH 160
            + +   EH
Sbjct: 282 DAAEEGHEH 290

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BLAST of Carg22129 vs. Swiss-Prot
Match: sp|Q8H0W3|RVE6_ARATH (Protein REVEILLE 6 OS=Arabidopsis thaliana OX=3702 GN=RVE6 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 88  LRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHK 147
           LRVLPDF QVY FIGSVFDP A +HLQ+L KMD IDVETVLLLMRNL+INLSSPDFEDH+
Sbjct: 240 LRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHR 299

Query: 148 RVLSSYD 155
           R+LSSYD
Sbjct: 300 RLLSSYD 306

[Close]

BLAST of Carg22129 vs. Swiss-Prot
Match: sp|Q6R0H0|RVE3_ARATH (Protein REVEILLE 3 OS=Arabidopsis thaliana OX=3702 GN=RVE3 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-21
Identity = 48/100 (48.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 61  VKQNNCSITRTRFPTKSSSIEENNN-----LPLRVLPDFGQVYNFIGSVFDPKAIDHLQR 120
           V +N CS + +R   ++  + E N+      P RV P+F +VYNFIGSVFDPK   H++R
Sbjct: 187 VSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKR 246

Query: 121 LNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDA 156
           L +MD I++ETVLLLM+NL++NL+SP+F++ ++++SSY+A
Sbjct: 247 LKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 286

[Close]

BLAST of Carg22129 vs. Swiss-Prot
Match: sp|C0SVG5|RVE5_ARATH (Protein REVEILLE 5 OS=Arabidopsis thaliana OX=3702 GN=RVE5 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-19
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 17  VEPECITKPDSSSVPVSFVSAAAMPSRADHS--------IHTANFSQAARGEVKQNNC-- 76
           +EP  +   DS S+  +    A+  S  +H         I       +A   +  N C  
Sbjct: 151 LEPGYLYSSDSKSLMGNQAVCASTSSSWNHESTNLPKPVIEVEEPGVSATAPLPNNRCRQ 210

Query: 77  -SITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVE 136
               R R  TK ++ EE+   P RV+P+F +VY+FIGSVFDP    HLQRL +MD I++E
Sbjct: 211 EDTERVRAVTKPNN-EESCEKPHRVMPNFAEVYSFIGSVFDPNTSGHLQRLKQMDPINME 270

Query: 137 TVLLLMRNLAINLSSPDFEDHKRVLSSYDA 156
           TVLLLM+NL++NL+SP+F + +R++SSY A
Sbjct: 271 TVLLLMQNLSVNLTSPEFAEQRRLISSYSA 299

[Close]

BLAST of Carg22129 vs. Swiss-Prot
Match: sp|Q8RWU3|RVE8_ARATH (Protein REVEILLE 8 OS=Arabidopsis thaliana OX=3702 GN=RVE8 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 88  LRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHK 147
           L  +PDF +VYNFIGSVFDP+   H+++L +MD I+ ETVLLLMRNL +NLS+PD E  +
Sbjct: 210 LHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTVNLSNPDLESTR 269

Query: 148 RVLSSYD 155
           +VL SYD
Sbjct: 270 KVLLSYD 276

[Close]

BLAST of Carg22129 vs. Swiss-Prot
Match: sp|Q6R0G4|RVE4_ARATH (Protein REVEILLE 4 OS=Arabidopsis thaliana OX=3702 GN=RVE4 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 91  LPDFGQVYNFIGSVFDPKAIDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVL 150
           LPDF +VYNFIGSVFDP +   +++L +MD I+ ETVLLLMRNL +NLS+PDFE     +
Sbjct: 222 LPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPTSEYV 281

Query: 151 SSYDAFMEH 160
            + +   EH
Sbjct: 282 DAAEEGHEH 290

[Close]

BLAST of Carg22129 vs. TrEMBL
Match: tr|A0A1S3AYE0|A0A1S3AYE0_CUCME (protein REVEILLE 6-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.0e-57
Identity = 124/164 (75.61%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 2   ISDLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEV 61
           +S +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ ARG+V
Sbjct: 134 VSGVALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQGARGQV 193

Query: 62  KQNNCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRL 121
            +NNCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA +HL+RL
Sbjct: 194 IENNCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKASNHLKRL 253

Query: 122 NKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
            +MDQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 254 EQMDQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 296

[Close]

BLAST of Carg22129 vs. TrEMBL
Match: tr|A0A1S3AZ30|A0A1S3AZ30_CUCME (protein REVEILLE 6-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-56
Identity = 123/161 (76.40%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 5   LALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEVKQN 64
           +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ ARG+V +N
Sbjct: 135 VALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQGARGQVIEN 194

Query: 65  NCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRLNKM 124
           NCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA +HL+RL +M
Sbjct: 195 NCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKASNHLKRLEQM 254

Query: 125 DQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           DQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 255 DQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 294

[Close]

BLAST of Carg22129 vs. TrEMBL
Match: tr|A0A1S3AY10|A0A1S3AY10_CUCME (protein REVEILLE 6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.6e-55
Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 2   ISDLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARG-- 61
           +S +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ ARG  
Sbjct: 134 VSGVALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQGARGLN 193

Query: 62  -----EVKQNNCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKA 121
                +V +NNCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA
Sbjct: 194 CEITRQVIENNCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKA 253

Query: 122 IDHLQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
            +HL+RL +MDQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 254 SNHLKRLEQMDQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 303

[Close]

BLAST of Carg22129 vs. TrEMBL
Match: tr|A0A1S3AZ32|A0A1S3AZ32_CUCME (protein REVEILLE 6-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 122/164 (74.39%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 2   ISDLALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARGEV 61
           +S +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ   G+V
Sbjct: 134 VSGVALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQ---GQV 193

Query: 62  KQNNCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDHLQRL 121
            +NNCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA +HL+RL
Sbjct: 194 IENNCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKASNHLKRL 253

Query: 122 NKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
            +MDQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 254 EQMDQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 293

[Close]

BLAST of Carg22129 vs. TrEMBL
Match: tr|A0A1S3AYG1|A0A1S3AYG1_CUCME (protein REVEILLE 6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 123/168 (73.21%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 5   LALVSRPLQPSSVEPECITKPDSSSVPVSFVSAAAMPSRADHSIHTANFSQAARG----- 64
           +ALV+ P Q SSVEP+   KPDSSS P SF+SA AM SRAD+SI T NFSQ ARG     
Sbjct: 135 VALVTVPFQSSSVEPKYNIKPDSSSAPASFISATAMSSRADNSIQTVNFSQGARGLNCEI 194

Query: 65  --EVKQNNCS-----ITRTRFPTKSSSIEENNNLPLRVLPDFGQVYNFIGSVFDPKAIDH 124
             +V +NNCS      TRTRFPTK SSIEE+NNL LRVLPDFGQVYNFIGSVFDPKA +H
Sbjct: 195 TRQVIENNCSSSTDRTTRTRFPTK-SSIEEHNNLQLRVLPDFGQVYNFIGSVFDPKASNH 254

Query: 125 LQRLNKMDQIDVETVLLLMRNLAINLSSPDFEDHKRVLSSYDAFMEHG 161
           L+RL +MDQIDVETVLLLMRNLAINL+S DFEDHKRVLSSYD FMEHG
Sbjct: 255 LKRLEQMDQIDVETVLLLMRNLAINLTSSDFEDHKRVLSSYDCFMEHG 301

The following BLAST results are available for this feature:

BLAST of Carg22129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944893.1	1.7e-80	100.00	protein REVEILLE 6-like [Cucurbita moschata]	[more]
XP_023541352.1	1.1e-79	99.36	protein REVEILLE 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968540.1	9.6e-76	95.54	protein REVEILLE 6-like isoform X1 [Cucurbita maxima]	[more]
XP_022968541.1	9.6e-76	95.54	protein REVEILLE 6-like isoform X2 [Cucurbita maxima]	[more]
XP_008439278.1	4.5e-57	75.61	PREDICTED: protein REVEILLE 6-like isoform X3 [Cucumis melo]	[more]

BLAST of Carg22129 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52660.2	1.7e-26	83.58	Homeodomain-like superfamily protein	[more]
AT1G01520.1	4.4e-22	48.00	Homeodomain-like superfamily protein	[more]
AT4G01280.2	2.4e-20	40.00	Homeodomain-like superfamily protein	[more]
AT3G09600.1	1.7e-18	61.19	Homeodomain-like superfamily protein	[more]
AT5G02840.1	6.1e-16	55.07	LHY/CCA1-like 1	[more]

BLAST of Carg22129 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8H0W3\|RVE6_ARATH	3.1e-25	83.58	Protein REVEILLE 6 OS=Arabidopsis thaliana OX=3702 GN=RVE6 PE=2 SV=1	[more]
sp\|Q6R0H0\|RVE3_ARATH	7.9e-21	48.00	Protein REVEILLE 3 OS=Arabidopsis thaliana OX=3702 GN=RVE3 PE=2 SV=1	[more]
sp\|C0SVG5\|RVE5_ARATH	4.3e-19	40.00	Protein REVEILLE 5 OS=Arabidopsis thaliana OX=3702 GN=RVE5 PE=2 SV=1	[more]
sp\|Q8RWU3\|RVE8_ARATH	3.1e-17	61.19	Protein REVEILLE 8 OS=Arabidopsis thaliana OX=3702 GN=RVE8 PE=2 SV=1	[more]
sp\|Q6R0G4\|RVE4_ARATH	1.1e-14	55.07	Protein REVEILLE 4 OS=Arabidopsis thaliana OX=3702 GN=RVE4 PE=1 SV=1	[more]

BLAST of Carg22129 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYE0\|A0A1S3AYE0_CUCME	3.0e-57	75.61	protein REVEILLE 6-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 ...	[more]
tr\|A0A1S3AZ30\|A0A1S3AZ30_CUCME	1.5e-56	76.40	protein REVEILLE 6-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 ...	[more]
tr\|A0A1S3AY10\|A0A1S3AY10_CUCME	3.6e-55	72.51	protein REVEILLE 6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 ...	[more]
tr\|A0A1S3AZ32\|A0A1S3AZ32_CUCME	1.1e-54	74.39	protein REVEILLE 6-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 ...	[more]
tr\|A0A1S3AYG1\|A0A1S3AYG1_CUCME	1.8e-54	73.21	protein REVEILLE 6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484108 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22129-RA	Carg22129-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 8..153
None	No IPR available	PANTHER	PTHR12802:SF83	SUBFAMILY NOT NAMED	coord: 8..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22129	Cla006146	Watermelon (97103) v1	carwmB0736
Carg22129	ClCG05G008420	Watermelon (Charleston Gray)	carwcgB0715
Carg22129	CmaCh18G012690	Cucurbita maxima (Rimu)	carcmaB1032
Carg22129	CmoCh18G013010	Cucurbita moschata (Rifu)	carcmoB1003
Carg22129	Cp4.1LG09g00710	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22129	CsaV3_3G017490	Cucumber (Chinese Long) v3	carcucB0774
Carg22129	Cla97C05G090510	Watermelon (97103) v2	carwmbB0772
Carg22129	Cla97C05G081630	Watermelon (97103) v2	carwmbB0773
Carg22129	BhiUN557G21	Wax gourd	carwgoB0869
Carg22129	Bhi01G000233	Wax gourd	carwgoB0872

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22129	Carg08398	Silver-seed gourd	carcarB583
Carg22129	Carg15106	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22129	Cucumber (Gy14) v2	carcgybB0733
Carg22129	Cucumber (Gy14) v1	carcgyB0828
Carg22129	Cucurbita maxima (Rimu)	carcmaB1031
Carg22129	Cucurbita moschata (Rifu)	carcmoB1002
Carg22129	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22129	Wild cucumber (PI 183967)	carcpiB0771
Carg22129	Cucumber (Chinese Long) v2	carcuB0754
Carg22129	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22129	Melon (DHL92) v3.5.1	carmeB0732
Carg22129	Melon (DHL92) v3.5.1	carmeB0733
Carg22129	Melon (DHL92) v3.6.1	carmedB0743
Carg22129	Melon (DHL92) v3.6.1	carmedB0744