Carg22108 (gene) Silver-seed gourd

NameCarg22108
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChloroplast thylakoid membrane, putative isoform 2
LocationCucurbita_argyrosperma_scaffold_229 : 129644 .. 130435 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTGGTTCGGATAGAGAGATAAGTAAAAAAGACTCCCTTTTCTTCCGCCCCTTTATCCACCAAAATCCCTACGCCTTTTTCTCATTCAATTCCTTCTTTTTTTACAAATTCAAGCTTGAATTTTCTTCCTCAATCCAATCTTCCCCAATTTACAGTAAATTACTCAATCTCCGTTTGGAGTAGGCTTTTTCATGGCTTCCACTCCTTCCACATGTTCGCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCGGGTGATTTTCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGTACTAATTATCTTGGTTTTCCCCCCAAATTTTAATTACTGGGCTGCAATTTCTTGATGTTAATGTGGTCCTTTTGTTGTTTTGGTGTTTAGGGCCAACAATTTAAACATTTTCGTTTTGAAATTTTGATTAATGGTCTTGAAGTAGTTTCTTTCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAGTGAGTTGTTTTCTTCAAGAATGCTTTTCTTTTTTGTTTCTTTTTGA

mRNA sequence

CTTCTTGGTTCGGATAGAGAGATAAGTAAAAAAGACTCCCTTTTCTTCCGCCCCTTTATCCACCAAAATCCCTACGCCTTTTTCTCATTCAATTCCTTCTTTTTTTACAAATTCAAGCTTGAATTTTCTTCCTCAATCCAATCTTCCCCAATTTACAGTAAATTACTCAATCTCCGTTTGGAGTAGGCTTTTTCATGGCTTCCACTCCTTCCACATGTTCGCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCGGGTGATTTTCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAGTGAGTTGTTTTCTTCAAGAATGCTTTTCTTTTTTGTTTCTTTTTGA

Coding sequence (CDS)

ATGGCTTCCACTCCTTCCACATGTTCGCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCGGGTGATTTTCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAGTGAGTTGTTTTCTTCAAGAATGCTTTTCTTTTTTGTTTCTTTTTGA

Protein sequence

MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITFAAWSINKQNCSSELFSSRMLFFFVSF
BLAST of Carg22108 vs. NCBI nr
Match: XP_022945850.1 (uncharacterized protein LOC111449970 isoform X1 [Cucurbita moschata])

HSP 1 Score: 261.2 bits (666), Expect = 2.2e-66
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRL+VI RPIVHNSAKIART
Sbjct: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLQVICRPIVHNSAKIART 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF
Sbjct: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQNCS +
Sbjct: 121 AAWSINKQNCSKQ 133

BLAST of Carg22108 vs. NCBI nr
Match: XP_023541683.1 (uncharacterized protein LOC111801768 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 4.1e-65
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVI RPIVHNSAKIART
Sbjct: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVISRPIVHNSAKIART 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLRRN ICFAGSDSKADGFSGWSESDSGEEDLNLR KNWLAGLVGIGITGFILVSGITF
Sbjct: 61  NGLRRNEICFAGSDSKADGFSGWSESDSGEEDLNLRRKNWLAGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQNCS +
Sbjct: 121 AAWSINKQNCSRQ 133

BLAST of Carg22108 vs. NCBI nr
Match: XP_022968011.1 (uncharacterized protein LOC111467385 isoform X1 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 6.5e-63
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MASTPSTCSPNSLQLRLALNCKN  KFP +PVRATVRKLDPRLRVI RPIVHNSAKIART
Sbjct: 1   MASTPSTCSPNSLQLRLALNCKNFAKFPLVPVRATVRKLDPRLRVICRPIVHNSAKIART 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLRR+GICFAGSDSKADGFSGWSESDSGEEDLNLR KNWLAGLVGIGITGFILVSGITF
Sbjct: 61  NGLRRDGICFAGSDSKADGFSGWSESDSGEEDLNLRRKNWLAGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQNCS +
Sbjct: 121 AAWSINKQNCSKQ 133

BLAST of Carg22108 vs. NCBI nr
Match: XP_022968012.1 (uncharacterized protein LOC111467385 isoform X2 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 6.5e-63
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MASTPSTCSPNSLQLRLALNCKN  KFP +PVRATVRKLDPRLRVI RPIVHNSAKIART
Sbjct: 1   MASTPSTCSPNSLQLRLALNCKNFAKFPLVPVRATVRKLDPRLRVICRPIVHNSAKIART 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLRR+GICFAGSDSKADGFSGWSESDSGEEDLNLR KNWLAGLVGIGITGFILVSGITF
Sbjct: 61  NGLRRDGICFAGSDSKADGFSGWSESDSGEEDLNLRRKNWLAGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQNCS +
Sbjct: 121 AAWSINKQNCSKQ 133

BLAST of Carg22108 vs. NCBI nr
Match: XP_008439251.1 (PREDICTED: uncharacterized protein LOC103484091 isoform X1 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 99/133 (74.44%), Postives = 108/133 (81.20%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAST  TCSP+SLQLRLALNC N  KFP + VRA VRKLDPRLR++ +PIVHN AK  R 
Sbjct: 1   MASTSPTCSPSSLQLRLALNCNNCGKFPSVFVRARVRKLDPRLRIVCQPIVHNGAKFDRG 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLR  G+CFAGS+S ADGFSGWSESDS  E L+LR K W  GLVGIGITGFILVSGITF
Sbjct: 61  NGLRGTGVCFAGSESTADGFSGWSESDSQGEVLDLRRKKWFGGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQN S +
Sbjct: 121 AAWSINKQNSSRQ 133

BLAST of Carg22108 vs. TAIR10
Match: AT5G23890.1 (LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAS  +T +P SLQLRLAL+             + VR+  P   V  RP     +++AR 
Sbjct: 1   MASATATWTPTSLQLRLALS-------------SGVRRKSP--AVYLRP-----SRLARK 60

Query: 61  NGL-------RRNGICFAGSD---SKADGFSGWSESDSGE-EDLNLRTKNWLAGLVGIGI 120
           +G        +     + GSD   S AD  +GW +SD+ + +   ++ K+ + G+VG G+
Sbjct: 61  SGYGIVCVSQKPEVDAWTGSDSSKSSADNLAGWDDSDNDDKKSSRVKKKSLIEGVVGAGV 120

Query: 121 TGFILVSGITFAAWSINKQNCSSELFS 137
            G IL  G+++AA S +K+    E+ S
Sbjct: 121 AGIILFLGLSYAAASFSKRTKKQEMHS 127

BLAST of Carg22108 vs. TrEMBL
Match: tr|A0A1S3AXY7|A0A1S3AXY7_CUCME (uncharacterized protein LOC103484091 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484091 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 99/133 (74.44%), Postives = 108/133 (81.20%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAST  TCSP+SLQLRLALNC N  KFP + VRA VRKLDPRLR++ +PIVHN AK  R 
Sbjct: 1   MASTSPTCSPSSLQLRLALNCNNCGKFPSVFVRARVRKLDPRLRIVCQPIVHNGAKFDRG 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLR  G+CFAGS+S ADGFSGWSESDS  E L+LR K W  GLVGIGITGFILVSGITF
Sbjct: 61  NGLRGTGVCFAGSESTADGFSGWSESDSQGEVLDLRRKKWFGGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQN S +
Sbjct: 121 AAWSINKQNSSRQ 133

BLAST of Carg22108 vs. TrEMBL
Match: tr|A0A1S3AYZ8|A0A1S3AYZ8_CUCME (uncharacterized protein LOC103484091 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484091 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 99/133 (74.44%), Postives = 108/133 (81.20%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAST  TCSP+SLQLRLALNC N  KFP + VRA VRKLDPRLR++ +PIVHN AK  R 
Sbjct: 1   MASTSPTCSPSSLQLRLALNCNNCGKFPSVFVRARVRKLDPRLRIVCQPIVHNGAKFDRG 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NGLR  G+CFAGS+S ADGFSGWSESDS  E L+LR K W  GLVGIGITGFILVSGITF
Sbjct: 61  NGLRGTGVCFAGSESTADGFSGWSESDSQGEVLDLRRKKWFGGLVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQN S +
Sbjct: 121 AAWSINKQNSSRQ 133

BLAST of Carg22108 vs. TrEMBL
Match: tr|A0A0A0L9T9|A0A0A0L9T9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182230 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.1e-45
Identity = 98/133 (73.68%), Postives = 102/133 (76.69%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAST  TCSP SLQLRLALNC N  KFP L VRA VRKLDPRLRVI  PIVHN  K  R 
Sbjct: 1   MASTSPTCSPTSLQLRLALNCNNCGKFPSLLVRARVRKLDPRLRVICHPIVHNGVKFDRG 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
           NG R  G+CFAGS+S  DGFSGWSESDS  E L+LR K W  G VGIGITGFILVSGITF
Sbjct: 61  NGRRGTGVCFAGSESTPDGFSGWSESDSQGEGLDLRRKKWFGGFVGIGITGFILVSGITF 120

Query: 121 AAWSINKQNCSSE 134
           AAWSINKQN S +
Sbjct: 121 AAWSINKQNSSRQ 133

BLAST of Carg22108 vs. TrEMBL
Match: tr|A0A1Q3CGV2|A0A1Q3CGV2_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22768 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 0

Query: 1   MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIART 60
           MAST +TCSP+SLQLRLA+NC+ SP    + VR+ ++K+D ++ V+       S +    
Sbjct: 1   MASTTATCSPSSLQLRLAMNCRKSP--AIILVRSRLKKIDRQVSVLCVAQCWASNRNGNF 60

Query: 61  NGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITF 120
              R NG  + GSDSKAD FSGWS SD+G++ +  + K W  G VG G+ G +LV+G+TF
Sbjct: 61  AERRHNGSSWVGSDSKADTFSGWSRSDNGDDSIESQRKKWFTGFVGAGVAGVVLVAGLTF 120

Query: 121 AAWSINKQNCSSEL 135
           AA S+NK+N S ++
Sbjct: 121 AALSLNKRNTSRQM 132

BLAST of Carg22108 vs. TrEMBL
Match: tr|A0A2N9EEN1|A0A2N9EEN1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1012 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 65/134 (48.51%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 2   ASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLRVIFRPIVHNSAKIARTN 61
           +ST +T SP+SLQLR ALNC+N  K P + +RA   +LD R+R  FR +     +    N
Sbjct: 3   SSTIATWSPSSLQLRYALNCRNCRKSPAILLRA---QLDRRVR--FRVLCVAQDEARNEN 62

Query: 62  GL--RRNGICFAGSDSKADGFSGWSESD----SGEEDLNLRTKNWLAGLVGIGITGFILV 121
           G+  RRNG    GSDS  DGFSGWS+SD    S  E +  +   W  G+VG G+ G ILV
Sbjct: 63  GVERRRNGSQLVGSDSTVDGFSGWSKSDVREESESEPVESQKNKWFGGVVGAGVVGVILV 122

Query: 122 SGITFAAWSINKQN 130
           SGITFAA+S++K+N
Sbjct: 123 SGITFAAFSLSKRN 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945850.12.2e-6696.99uncharacterized protein LOC111449970 isoform X1 [Cucurbita moschata][more]
XP_023541683.14.1e-6596.24uncharacterized protein LOC111801768 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022968011.16.5e-6393.23uncharacterized protein LOC111467385 isoform X1 [Cucurbita maxima][more]
XP_022968012.16.5e-6393.23uncharacterized protein LOC111467385 isoform X2 [Cucurbita maxima][more]
XP_008439251.11.9e-4674.44PREDICTED: uncharacterized protein LOC103484091 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT5G23890.11.9e-0831.97LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid,... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AXY7|A0A1S3AXY7_CUCME1.3e-4674.44uncharacterized protein LOC103484091 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3AYZ8|A0A1S3AYZ8_CUCME1.3e-4674.44uncharacterized protein LOC103484091 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0L9T9|A0A0A0L9T9_CUCSA4.1e-4573.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182230 PE=4 SV=1[more]
tr|A0A1Q3CGV2|A0A1Q3CGV2_CEPFO4.0e-2446.27Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22768 PE=4... [more]
tr|A0A2N9EEN1|A0A2N9EEN1_FAGSY2.2e-1948.51Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1012 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22108-RACarg22108-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33740:SF3SUBFAMILY NOT NAMEDcoord: 1..132
NoneNo IPR availablePANTHERPTHR33740FAMILY NOT NAMEDcoord: 1..132